Guide to the Human Genome
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Search of human proteins with 11345450

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|11345450 secretin preproprotein [Homo sapiens]
         (121 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|11345450 secretin preproprotein [Homo sapiens]                     248   8e-67
gi|153266792 adenylate cyclase activating polypeptide precursor ...    47   4e-06
gi|153266795 adenylate cyclase activating polypeptide precursor ...    47   4e-06
gi|37588853 vasoactive intestinal peptide isoform 2 preproprotei...    35   0.018
gi|4507897 vasoactive intestinal peptide isoform 1 preproprotein...    33   0.039
gi|4503945 glucagon preproprotein [Homo sapiens]                       32   0.11 
gi|11034841 growth hormone releasing hormone preproprotein [Homo...    31   0.25 
gi|4505101 microtubule-associated protein 7 [Homo sapiens]             30   0.33 
gi|148612809 WNK lysine deficient protein kinase 1 [Homo sapiens]      30   0.43 
gi|31317307 proprotein convertase subtilisin/kexin type 9 prepro...    30   0.57 
gi|33350932 cytoplasmic dynein 1 heavy chain 1 [Homo sapiens]          30   0.57 
gi|134244285 Notch homolog 3 [Homo sapiens]                            29   0.74 
gi|239754289 PREDICTED: hypothetical protein [Homo sapiens]            29   0.97 
gi|239748826 PREDICTED: hypothetical protein XP_002346831 [Homo ...    29   0.97 
gi|239742857 PREDICTED: hypothetical protein XP_002342664 [Homo ...    29   0.97 
gi|239740873 PREDICTED: hypothetical protein XP_002344073 [Homo ...    29   0.97 
gi|239740807 PREDICTED: hypothetical protein [Homo sapiens]            29   0.97 
gi|239513965 PREDICTED: hypothetical protein [Homo sapiens]            29   0.97 
gi|51988914 fibroblast growth factor receptor-like 1 precursor [...    29   0.97 
gi|51988910 fibroblast growth factor receptor-like 1 precursor [...    29   0.97 
gi|51988912 fibroblast growth factor receptor-like 1 precursor [...    29   0.97 
gi|153792351 ADAM metallopeptidase with thrombospondin type 1 mo...    29   0.97 
gi|8922108 cytokine-like 1 [Homo sapiens]                              29   0.97 
gi|21264320 NLR family, pyrin domain containing 6 [Homo sapiens]       29   0.97 
gi|169204930 PREDICTED: hypothetical protein [Homo sapiens]            28   1.3  
gi|239750393 PREDICTED: hypothetical protein [Homo sapiens]            28   1.3  
gi|239744694 PREDICTED: hypothetical protein [Homo sapiens]            28   1.3  
gi|239740757 PREDICTED: hypothetical protein [Homo sapiens]            28   1.3  
gi|239740703 PREDICTED: hypothetical protein [Homo sapiens]            28   1.3  
gi|170014689 VPS10 domain receptor protein SORCS 2 [Homo sapiens]      28   1.3  

>gi|11345450 secretin preproprotein [Homo sapiens]
          Length = 121

 Score =  248 bits (633), Expect = 8e-67
 Identities = 121/121 (100%), Positives = 121/121 (100%)

Query: 1   MAPRPLLLLLLLLGGSAARPAPPRARRHSDGTFTSELSRLREGARLQRLLQGLVGKRSEQ 60
           MAPRPLLLLLLLLGGSAARPAPPRARRHSDGTFTSELSRLREGARLQRLLQGLVGKRSEQ
Sbjct: 1   MAPRPLLLLLLLLGGSAARPAPPRARRHSDGTFTSELSRLREGARLQRLLQGLVGKRSEQ 60

Query: 61  DAENSMAWTRLSAGLLCPSGSNMPILQAWMPLDGTWSPWLPPGPMVSEPAGAAAEGTLRP 120
           DAENSMAWTRLSAGLLCPSGSNMPILQAWMPLDGTWSPWLPPGPMVSEPAGAAAEGTLRP
Sbjct: 61  DAENSMAWTRLSAGLLCPSGSNMPILQAWMPLDGTWSPWLPPGPMVSEPAGAAAEGTLRP 120

Query: 121 R 121
           R
Sbjct: 121 R 121


>gi|153266792 adenylate cyclase activating polypeptide precursor
           [Homo sapiens]
          Length = 176

 Score = 46.6 bits (109), Expect = 4e-06
 Identities = 22/52 (42%), Positives = 32/52 (61%)

Query: 13  LGGSAARPAPPRARRHSDGTFTSELSRLREGARLQRLLQGLVGKRSEQDAEN 64
           LGG A   A P ++RHSDG FT   SR R+   +++ L  ++GKR +Q  +N
Sbjct: 117 LGGGAGDDAEPLSKRHSDGIFTDSYSRYRKQMAVKKYLAAVLGKRYKQRVKN 168


>gi|153266795 adenylate cyclase activating polypeptide precursor
           [Homo sapiens]
          Length = 176

 Score = 46.6 bits (109), Expect = 4e-06
 Identities = 22/52 (42%), Positives = 32/52 (61%)

Query: 13  LGGSAARPAPPRARRHSDGTFTSELSRLREGARLQRLLQGLVGKRSEQDAEN 64
           LGG A   A P ++RHSDG FT   SR R+   +++ L  ++GKR +Q  +N
Sbjct: 117 LGGGAGDDAEPLSKRHSDGIFTDSYSRYRKQMAVKKYLAAVLGKRYKQRVKN 168


>gi|37588853 vasoactive intestinal peptide isoform 2 preproprotein
           [Homo sapiens]
          Length = 169

 Score = 34.7 bits (78), Expect = 0.018
 Identities = 18/49 (36%), Positives = 28/49 (57%)

Query: 24  RARRHSDGTFTSELSRLREGARLQRLLQGLVGKRSEQDAENSMAWTRLS 72
           R  RH+DG FTS+ S+L      ++ L+ L+GKR    +E+ +   R S
Sbjct: 77  RNARHADGVFTSDFSKLLGQLSAKKYLESLMGKRVSNISEDPVPVKRHS 125



 Score = 31.6 bits (70), Expect = 0.15
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 22  PPRARRHSDGTFTSELSRLREGARLQRLLQGLV-GKRSEQ 60
           P   +RHSD  FT   +RLR+   +++ L  ++ GKRS +
Sbjct: 118 PVPVKRHSDAVFTDNYTRLRKQMAVKKYLNSILNGKRSSE 157


>gi|4507897 vasoactive intestinal peptide isoform 1 preproprotein
           [Homo sapiens]
          Length = 170

 Score = 33.5 bits (75), Expect = 0.039
 Identities = 15/34 (44%), Positives = 22/34 (64%)

Query: 24  RARRHSDGTFTSELSRLREGARLQRLLQGLVGKR 57
           R  RH+DG FTS+ S+L      ++ L+ L+GKR
Sbjct: 77  RNARHADGVFTSDFSKLLGQLSAKKYLESLMGKR 110



 Score = 31.6 bits (70), Expect = 0.15
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 22  PPRARRHSDGTFTSELSRLREGARLQRLLQGLV-GKRSEQ 60
           P   +RHSD  FT   +RLR+   +++ L  ++ GKRS +
Sbjct: 119 PVPVKRHSDAVFTDNYTRLRKQMAVKKYLNSILNGKRSSE 158


>gi|4503945 glucagon preproprotein [Homo sapiens]
          Length = 180

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 15/41 (36%), Positives = 23/41 (56%)

Query: 27  RHSDGTFTSELSRLREGARLQRLLQGLVGKRSEQDAENSMA 67
           RH++GTFTS++S   EG   +  +  LV  R  +D    +A
Sbjct: 97  RHAEGTFTSDVSSYLEGQAAKEFIAWLVKGRGRRDFPEEVA 137



 Score = 30.8 bits (68), Expect = 0.25
 Identities = 13/36 (36%), Positives = 22/36 (61%)

Query: 26 RRHSDGTFTSELSRLREGARLQRLLQGLVGKRSEQD 61
          +RHS GTFTS+ S+  +  R Q  +Q L+  +  ++
Sbjct: 51 KRHSQGTFTSDYSKYLDSRRAQDFVQWLMNTKRNRN 86


>gi|11034841 growth hormone releasing hormone preproprotein [Homo
          sapiens]
          Length = 108

 Score = 30.8 bits (68), Expect = 0.25
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 3/67 (4%)

Query: 8  LLLLLLGGSAARPAPP---RARRHSDGTFTSELSRLREGARLQRLLQGLVGKRSEQDAEN 64
          ++L L   S   P PP   R RR++D  FT+   ++      ++LLQ ++ ++  +  + 
Sbjct: 9  VILTLSNSSHCSPPPPLTLRMRRYADAIFTNSYRKVLGQLSARKLLQDIMSRQQGESNQE 68

Query: 65 SMAWTRL 71
            A  RL
Sbjct: 69 RGARARL 75


>gi|4505101 microtubule-associated protein 7 [Homo sapiens]
          Length = 749

 Score = 30.4 bits (67), Expect = 0.33
 Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 13/92 (14%)

Query: 42  EGARLQRLLQGLVGKRSEQDAENSM---AWTRLSAGLLCPSGSNMPILQAWMP------L 92
           EG+  +R++ G    + E++ EN +   + TR +     P        + W+P      L
Sbjct: 280 EGSSRRRIIHGTASYKKERERENVLFLTSGTRRAVSPSNPKARQPARSRLWLPSKSLPHL 339

Query: 93  DGTWSPW--LPPGPMVSEPAGA--AAEGTLRP 120
            GT  P   LPPG + + PA     + G +RP
Sbjct: 340 PGTPRPTSSLPPGSVKAAPAQVRPPSPGNIRP 371


>gi|148612809 WNK lysine deficient protein kinase 1 [Homo sapiens]
          Length = 2382

 Score = 30.0 bits (66), Expect = 0.43
 Identities = 35/118 (29%), Positives = 47/118 (39%), Gaps = 10/118 (8%)

Query: 13   LGGSAARPAPPRARRHSDGTFTSELSRLREG-ARLQRLLQGLVGKRSEQDAENSMAWTRL 71
            +   AA+  PP       GTFT +L +L +  AR    L G  G +   + E      + 
Sbjct: 2226 VNSQAAQAQPPAMTSSRKGTFTDDLHKLVDNWARDAMNLSGRRGSKGHMNYEGPGMARKF 2285

Query: 72   SA-GLLCPS-----GSNMPILQAWMPLDGTWSPWLPPGPMVSEPA---GAAAEGTLRP 120
            SA G LC S     G + PI  A     G ++  + P      PA   GA   GT  P
Sbjct: 2286 SAPGQLCISMTSNLGGSAPISAASATSLGHFTKSMCPPQQYGFPATPFGAQWSGTGGP 2343


>gi|31317307 proprotein convertase subtilisin/kexin type 9
          preproprotein [Homo sapiens]
          Length = 692

 Score = 29.6 bits (65), Expect = 0.57
 Identities = 19/39 (48%), Positives = 22/39 (56%), Gaps = 4/39 (10%)

Query: 3  PRPLLLLLLLLGGSAARPAPPRARRHSDGTFTSELSRLR 41
          P PLLLLLLLL G    PA  RA+   DG +   +  LR
Sbjct: 12 PLPLLLLLLLLLG----PAGARAQEDEDGDYEELVLALR 46


>gi|33350932 cytoplasmic dynein 1 heavy chain 1 [Homo sapiens]
          Length = 4646

 Score = 29.6 bits (65), Expect = 0.57
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 78   PSGSNMPILQAWMPLDGTWSPWLPPGPMV 106
            P+  N+PI+   + + G WSPW    P +
Sbjct: 2527 PTAPNIPIIDYEVSISGEWSPWQAKVPQI 2555


>gi|134244285 Notch homolog 3 [Homo sapiens]
          Length = 2321

 Score = 29.3 bits (64), Expect = 0.74
 Identities = 24/83 (28%), Positives = 31/83 (37%), Gaps = 2/83 (2%)

Query: 34   TSELSRLREGARLQRLLQGLVGKRSEQDAENSMAWTRLSAGLLCPSGSNMPILQAWMPLD 93
            T  L RL      +RL Q +V    +     S         LLCP G+ +P L+A     
Sbjct: 2001 TDHLDRLPRDVAQERLHQDIVRLLDQPSGPRSPPGPHGLGPLLCPPGAFLPGLKA--AQS 2058

Query: 94   GTWSPWLPPGPMVSEPAGAAAEG 116
            G+     PPG     P G    G
Sbjct: 2059 GSKKSRRPPGKAGLGPQGPRGRG 2081


>gi|239754289 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 178

 Score = 28.9 bits (63), Expect = 0.97
 Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 12/66 (18%)

Query: 16  SAARPAPP-------RARRHSDGTFTSELSRLREGARLQRLLQGLVGKRSEQDAENSMAW 68
           S+A PAPP        +RR  DGT+T   SR R+G     L+    GKR ++    S+  
Sbjct: 104 SSATPAPPAGGDVTHHSRRGWDGTWTPRFSRPRDG-----LVPRSRGKRLQKICRFSLLV 158

Query: 69  TRLSAG 74
            R   G
Sbjct: 159 LRTHLG 164


>gi|239748826 PREDICTED: hypothetical protein XP_002346831 [Homo
           sapiens]
          Length = 178

 Score = 28.9 bits (63), Expect = 0.97
 Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 12/66 (18%)

Query: 16  SAARPAPP-------RARRHSDGTFTSELSRLREGARLQRLLQGLVGKRSEQDAENSMAW 68
           S+A PAPP        +RR  DGT+T   SR R+G     L+    GKR ++    S+  
Sbjct: 104 SSATPAPPAGGDVTHHSRRGWDGTWTPRFSRPRDG-----LVPRSRGKRLQKICRFSLLV 158

Query: 69  TRLSAG 74
            R   G
Sbjct: 159 LRTHLG 164


>gi|239742857 PREDICTED: hypothetical protein XP_002342664 [Homo
           sapiens]
          Length = 178

 Score = 28.9 bits (63), Expect = 0.97
 Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 12/66 (18%)

Query: 16  SAARPAPP-------RARRHSDGTFTSELSRLREGARLQRLLQGLVGKRSEQDAENSMAW 68
           S+A PAPP        +RR  DGT+T   SR R+G     L+    GKR ++    S+  
Sbjct: 104 SSATPAPPAGGDVTHHSRRGWDGTWTPRFSRPRDG-----LVPRSRGKRLQKICRFSLLV 158

Query: 69  TRLSAG 74
            R   G
Sbjct: 159 LRTHLG 164


>gi|239740873 PREDICTED: hypothetical protein XP_002344073 [Homo
           sapiens]
          Length = 178

 Score = 28.9 bits (63), Expect = 0.97
 Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 12/66 (18%)

Query: 16  SAARPAPP-------RARRHSDGTFTSELSRLREGARLQRLLQGLVGKRSEQDAENSMAW 68
           S+A PAPP        +RR  DGT+T   SR R+G     L+    GKR ++    S+  
Sbjct: 104 SSATPAPPAGGDVTHHSRRGWDGTWTPRFSRPRDG-----LVPRSRGKRLQKICRFSLLV 158

Query: 69  TRLSAG 74
            R   G
Sbjct: 159 LRTHLG 164


>gi|239740807 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 178

 Score = 28.9 bits (63), Expect = 0.97
 Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 12/66 (18%)

Query: 16  SAARPAPP-------RARRHSDGTFTSELSRLREGARLQRLLQGLVGKRSEQDAENSMAW 68
           S+A PAPP        +RR  DGT+T   SR R+G     L+    GKR ++    S+  
Sbjct: 104 SSATPAPPAGGDVTHHSRRGWDGTWTPRFSRPRDG-----LVPRSRGKRLQKICRFSLLV 158

Query: 69  TRLSAG 74
            R   G
Sbjct: 159 LRTHLG 164


>gi|239513965 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 178

 Score = 28.9 bits (63), Expect = 0.97
 Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 12/66 (18%)

Query: 16  SAARPAPP-------RARRHSDGTFTSELSRLREGARLQRLLQGLVGKRSEQDAENSMAW 68
           S+A PAPP        +RR  DGT+T   SR R+G     L+    GKR ++    S+  
Sbjct: 104 SSATPAPPAGGDVTHHSRRGWDGTWTPRFSRPRDG-----LVPRSRGKRLQKICRFSLLV 158

Query: 69  TRLSAG 74
            R   G
Sbjct: 159 LRTHLG 164


>gi|51988914 fibroblast growth factor receptor-like 1 precursor
          [Homo sapiens]
          Length = 504

 Score = 28.9 bits (63), Expect = 0.97
 Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 9/58 (15%)

Query: 1  MAPRPLLLLL---LLLGG---SAARPAPPRARRHSDGTFTSELSRLREGARLQRLLQG 52
          M P PLLLLL   LLLG    +AA   PP+    +D     +++RL    RLQ  ++G
Sbjct: 1  MTPSPLLLLLLPPLLLGAFPPAAAARGPPKM---ADKVVPRQVARLGRTVRLQCPVEG 55


>gi|51988910 fibroblast growth factor receptor-like 1 precursor
          [Homo sapiens]
          Length = 504

 Score = 28.9 bits (63), Expect = 0.97
 Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 9/58 (15%)

Query: 1  MAPRPLLLLL---LLLGG---SAARPAPPRARRHSDGTFTSELSRLREGARLQRLLQG 52
          M P PLLLLL   LLLG    +AA   PP+    +D     +++RL    RLQ  ++G
Sbjct: 1  MTPSPLLLLLLPPLLLGAFPPAAAARGPPKM---ADKVVPRQVARLGRTVRLQCPVEG 55


>gi|51988912 fibroblast growth factor receptor-like 1 precursor
          [Homo sapiens]
          Length = 504

 Score = 28.9 bits (63), Expect = 0.97
 Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 9/58 (15%)

Query: 1  MAPRPLLLLL---LLLGG---SAARPAPPRARRHSDGTFTSELSRLREGARLQRLLQG 52
          M P PLLLLL   LLLG    +AA   PP+    +D     +++RL    RLQ  ++G
Sbjct: 1  MTPSPLLLLLLPPLLLGAFPPAAAARGPPKM---ADKVVPRQVARLGRTVRLQCPVEG 55


>gi|153792351 ADAM metallopeptidase with thrombospondin type 1
           motif, 8 preproprotein [Homo sapiens]
          Length = 889

 Score = 28.9 bits (63), Expect = 0.97
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 6/45 (13%)

Query: 65  SMAW---TRLSAGLLCPSGSNMPILQAWMP---LDGTWSPWLPPG 103
           S+ W   T    G LC  GS +P  +   P    DG W+PW P G
Sbjct: 492 SLPWADGTPCGPGHLCSEGSCLPEEEVERPKPVADGGWAPWGPWG 536


>gi|8922108 cytokine-like 1 [Homo sapiens]
          Length = 136

 Score = 28.9 bits (63), Expect = 0.97
 Identities = 15/22 (68%), Positives = 17/22 (77%), Gaps = 1/22 (4%)

Query: 3  PRPLLLLLLLLGGS-AARPAPP 23
          P PL +LLLLL G+ AARP PP
Sbjct: 4  PGPLPVLLLLLAGAPAARPTPP 25


>gi|21264320 NLR family, pyrin domain containing 6 [Homo sapiens]
          Length = 892

 Score = 28.9 bits (63), Expect = 0.97
 Identities = 19/42 (45%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 15  GSAARPAPPRARRHSDGTFTSELSRLREGAR-LQRLLQGLVG 55
           G A  P P RARR    TF     R  EG R L  +LQG  G
Sbjct: 164 GPAEEPEPGRARRSDTHTFNRLFRRDEEGRRPLTVVLQGPAG 205


>gi|169204930 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 373

 Score = 28.5 bits (62), Expect = 1.3
 Identities = 13/27 (48%), Positives = 16/27 (59%)

Query: 14  GGSAARPAPPRARRHSDGTFTSELSRL 40
           GG  ARP+PPRAR+   G      +RL
Sbjct: 208 GGGGARPSPPRARQPPSGRPRPRRTRL 234


>gi|239750393 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 373

 Score = 28.5 bits (62), Expect = 1.3
 Identities = 13/27 (48%), Positives = 16/27 (59%)

Query: 14  GGSAARPAPPRARRHSDGTFTSELSRL 40
           GG  ARP+PPRAR+   G      +RL
Sbjct: 208 GGGGARPSPPRARQPPSGRPRPRRTRL 234


>gi|239744694 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 373

 Score = 28.5 bits (62), Expect = 1.3
 Identities = 13/27 (48%), Positives = 16/27 (59%)

Query: 14  GGSAARPAPPRARRHSDGTFTSELSRL 40
           GG  ARP+PPRAR+   G      +RL
Sbjct: 208 GGGGARPSPPRARQPPSGRPRPRRTRL 234


>gi|239740757 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 308

 Score = 28.5 bits (62), Expect = 1.3
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 7/35 (20%)

Query: 16  SAARPAPP-------RARRHSDGTFTSELSRLREG 43
           S+A PAPP        +RR  DGT+T   SR R+G
Sbjct: 104 SSATPAPPAGGDVTHHSRRGWDGTWTPRFSRPRDG 138


>gi|239740703 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 308

 Score = 28.5 bits (62), Expect = 1.3
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 7/35 (20%)

Query: 16  SAARPAPP-------RARRHSDGTFTSELSRLREG 43
           S+A PAPP        +RR  DGT+T   SR R+G
Sbjct: 104 SSATPAPPAGGDVTHHSRRGWDGTWTPRFSRPRDG 138


>gi|170014689 VPS10 domain receptor protein SORCS 2 [Homo sapiens]
          Length = 1159

 Score = 28.5 bits (62), Expect = 1.3
 Identities = 19/32 (59%), Positives = 21/32 (65%), Gaps = 3/32 (9%)

Query: 4  RPLLLLLLLLG--GSAAR-PAPPRARRHSDGT 32
          RPLLLLLLLLG  G+A R P P R   H+  T
Sbjct: 34 RPLLLLLLLLGACGAAGRSPEPGRLGPHAQLT 65


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.134    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,780,250
Number of Sequences: 37866
Number of extensions: 261435
Number of successful extensions: 1261
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 1212
Number of HSP's gapped (non-prelim): 86
length of query: 121
length of database: 18,247,518
effective HSP length: 89
effective length of query: 32
effective length of database: 14,877,444
effective search space: 476078208
effective search space used: 476078208
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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