Guide to the Human Genome
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Name: LOC100294146 Sequence: fasta or formatted (308aa) NCBI GI: 239740703
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.3         41           3
 C cysteine            2.6          8           1
 D aspartate           3.6         11           1
 E glutamate           4.5         14           3
 F phenylalanine       2.3          7           1
 G glycine            12.0         37           4
 H histidine           1.6          5           2
 I isoleucine          1.0          3           1
 K lysine              0.6          2           1
 L leucine             8.4         26           2
 M methionine          1.3          4           1
 N asparagine          0.6          2           1
 P proline            10.7         33           4
 Q glutamine           2.9          9           1
 R arginine           10.7         33           6
 S serine              8.1         25           2
 T threonine           5.2         16           1
 V valine              6.8         21           2
 W tryptophan          2.3          7           1
 Y tyrosine            1.3          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100294213          1.000   PREDICTED: hypothetical protein 
LOC100293840          0.443   PREDICTED: hypothetical protein 
LOC100290046          0.443   PREDICTED: hypothetical protein XP_002346831 
LOC100287550          0.443   PREDICTED: hypothetical protein XP_002342664 
LOC100294262          0.443   PREDICTED: hypothetical protein XP_002344073 
LOC100294248          0.443   PREDICTED: hypothetical protein 
LOC100294135          0.443   PREDICTED: hypothetical protein 
GGN                   0.025   gametogenetin 
LOC100289408          0.025   PREDICTED: hypothetical protein 
LOC100289408          0.025   PREDICTED: hypothetical protein XP_002344217 
MAST4                 0.023   microtubule associated serine/threonine kinase fami...
BTBD2                 0.023   BTB (POZ) domain containing 2 
SOX3                  0.023   SRY (sex determining region Y)-box 3 
LOC100127891          0.021   PREDICTED: hypothetical protein 
FUSSEL18              0.020   PREDICTED: functional smad suppressing element 18 [...
FUSSEL18              0.020   PREDICTED: functional smad suppressing element 18 [...
FUSSEL18              0.020   PREDICTED: functional smad suppressing element 18 [...
HCN4                  0.020   hyperpolarization activated cyclic nucleotide-gated p...
LOC100293327          0.020   PREDICTED: hypothetical protein 
LOC100291252          0.020   PREDICTED: hypothetical protein XP_002347634 
LOC100287254          0.020   PREDICTED: hypothetical protein XP_002343484 
SPAG8                 0.018   sperm associated antigen 8 isoform 1 
SPAG8                 0.018   sperm associated antigen 8 isoform 2 
OTUD7A                0.018   OTU domain containing 7A 
LOC100292351          0.016   PREDICTED: hypothetical protein 
LOC100134152          0.016   PREDICTED: similar to synaptotagmin XV-b 
LOC100294389          0.016   PREDICTED: hypothetical protein 
AMOT                  0.016   angiomotin isoform 2 
AMOT                  0.016   angiomotin isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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