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Search of human proteins with 113427839
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|113427839 PREDICTED: hypothetical protein [Homo sapiens]
(122 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169212869 PREDICTED: hypothetical protein [Homo sapiens] 255 7e-69
gi|113427839 PREDICTED: hypothetical protein [Homo sapiens] 255 7e-69
gi|113427667 PREDICTED: hypothetical protein [Homo sapiens] 255 7e-69
gi|239743072 PREDICTED: hypothetical protein [Homo sapiens] 38 0.002
gi|239508718 PREDICTED: hypothetical protein [Homo sapiens] 38 0.002
gi|238859651 pleckstrin homology domain containing family A memb... 37 0.003
gi|239751471 PREDICTED: hypothetical protein XP_002347846 [Homo ... 37 0.003
gi|239745974 PREDICTED: hypothetical protein XP_002343630 [Homo ... 37 0.003
gi|239741753 PREDICTED: hypothetical protein [Homo sapiens] 36 0.008
gi|239755952 PREDICTED: hypothetical protein [Homo sapiens] 33 0.040
gi|169167066 PREDICTED: hypothetical protein [Homo sapiens] 33 0.040
gi|113416187 PREDICTED: hypothetical protein [Homo sapiens] 33 0.040
gi|113415691 PREDICTED: hypothetical protein [Homo sapiens] 33 0.040
gi|21389533 BTB (POZ) domain containing 14A [Homo sapiens] 33 0.069
gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens] 32 0.12
gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens] 32 0.12
gi|239509031 PREDICTED: similar to hCG2042508 [Homo sapiens] 32 0.12
gi|13129048 oligonucleotide/oligosaccharide-binding fold contain... 32 0.12
gi|151301137 AT-hook transcription factor [Homo sapiens] 32 0.12
gi|239748344 PREDICTED: NK1 homeobox 1 [Homo sapiens] 32 0.15
gi|58218966 hypothetical protein LOC339201 [Homo sapiens] 32 0.15
gi|239756937 PREDICTED: hypothetical protein [Homo sapiens] 31 0.20
gi|239751449 PREDICTED: hypothetical protein XP_002347867 [Homo ... 31 0.20
gi|239745954 PREDICTED: hypothetical protein XP_002343623 [Homo ... 31 0.20
gi|154816198 transcription elongation factor B polypeptide 3C-li... 31 0.20
gi|156938279 transcription elongation factor B polypeptide 3C [H... 31 0.20
gi|115511030 hypothetical protein LOC115004 [Homo sapiens] 31 0.20
gi|162329612 phosphodiesterase 4A isoform 3 [Homo sapiens] 31 0.26
gi|153792110 HEG homolog 1 [Homo sapiens] 31 0.26
gi|169207312 PREDICTED: hypothetical protein [Homo sapiens] 30 0.34
>gi|169212869 PREDICTED: hypothetical protein [Homo sapiens]
Length = 122
Score = 255 bits (651), Expect = 7e-69
Identities = 122/122 (100%), Positives = 122/122 (100%)
Query: 1 MASDPRTGDLAGTPAQVRYRRQEPRRPPAAPAETGPRDGSHAPERERHSPGTATRIRAPL 60
MASDPRTGDLAGTPAQVRYRRQEPRRPPAAPAETGPRDGSHAPERERHSPGTATRIRAPL
Sbjct: 1 MASDPRTGDLAGTPAQVRYRRQEPRRPPAAPAETGPRDGSHAPERERHSPGTATRIRAPL 60
Query: 61 RAPRCRYHTTLLPREPLKTTASGLCLASRKEARSPFLARRVGLTSRRGDREGSRQCGQRA 120
RAPRCRYHTTLLPREPLKTTASGLCLASRKEARSPFLARRVGLTSRRGDREGSRQCGQRA
Sbjct: 61 RAPRCRYHTTLLPREPLKTTASGLCLASRKEARSPFLARRVGLTSRRGDREGSRQCGQRA 120
Query: 121 WY 122
WY
Sbjct: 121 WY 122
>gi|113427839 PREDICTED: hypothetical protein [Homo sapiens]
Length = 122
Score = 255 bits (651), Expect = 7e-69
Identities = 122/122 (100%), Positives = 122/122 (100%)
Query: 1 MASDPRTGDLAGTPAQVRYRRQEPRRPPAAPAETGPRDGSHAPERERHSPGTATRIRAPL 60
MASDPRTGDLAGTPAQVRYRRQEPRRPPAAPAETGPRDGSHAPERERHSPGTATRIRAPL
Sbjct: 1 MASDPRTGDLAGTPAQVRYRRQEPRRPPAAPAETGPRDGSHAPERERHSPGTATRIRAPL 60
Query: 61 RAPRCRYHTTLLPREPLKTTASGLCLASRKEARSPFLARRVGLTSRRGDREGSRQCGQRA 120
RAPRCRYHTTLLPREPLKTTASGLCLASRKEARSPFLARRVGLTSRRGDREGSRQCGQRA
Sbjct: 61 RAPRCRYHTTLLPREPLKTTASGLCLASRKEARSPFLARRVGLTSRRGDREGSRQCGQRA 120
Query: 121 WY 122
WY
Sbjct: 121 WY 122
>gi|113427667 PREDICTED: hypothetical protein [Homo sapiens]
Length = 122
Score = 255 bits (651), Expect = 7e-69
Identities = 122/122 (100%), Positives = 122/122 (100%)
Query: 1 MASDPRTGDLAGTPAQVRYRRQEPRRPPAAPAETGPRDGSHAPERERHSPGTATRIRAPL 60
MASDPRTGDLAGTPAQVRYRRQEPRRPPAAPAETGPRDGSHAPERERHSPGTATRIRAPL
Sbjct: 1 MASDPRTGDLAGTPAQVRYRRQEPRRPPAAPAETGPRDGSHAPERERHSPGTATRIRAPL 60
Query: 61 RAPRCRYHTTLLPREPLKTTASGLCLASRKEARSPFLARRVGLTSRRGDREGSRQCGQRA 120
RAPRCRYHTTLLPREPLKTTASGLCLASRKEARSPFLARRVGLTSRRGDREGSRQCGQRA
Sbjct: 61 RAPRCRYHTTLLPREPLKTTASGLCLASRKEARSPFLARRVGLTSRRGDREGSRQCGQRA 120
Query: 121 WY 122
WY
Sbjct: 121 WY 122
>gi|239743072 PREDICTED: hypothetical protein [Homo sapiens]
Length = 837
Score = 37.7 bits (86), Expect = 0.002
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 11/95 (11%)
Query: 35 GPRDGSHAPERERHSPGTATRIRAPLRAPRCRYHTTLLPREPLKTTASG--------LCL 86
G G + E + PG+ +R RAP +L P P T++G L +
Sbjct: 620 GGAGGGGSGEGQGRGPGSRVSVRRSSRAPSSCRAASLAPPRPASATSAGSPTSPAPPLHM 679
Query: 87 ASRKEARSPFLARRVGLTSRRGDREGSRQCGQRAW 121
S + FL V ++R+GDR +R+ G R+W
Sbjct: 680 VSTDGCSAAFL---VLDSARKGDRRSARRGGPRSW 711
>gi|239508718 PREDICTED: hypothetical protein [Homo sapiens]
Length = 837
Score = 37.7 bits (86), Expect = 0.002
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 11/95 (11%)
Query: 35 GPRDGSHAPERERHSPGTATRIRAPLRAPRCRYHTTLLPREPLKTTASG--------LCL 86
G G + E + PG+ +R RAP +L P P T++G L +
Sbjct: 620 GGAGGGGSGEGQGRGPGSRVSVRRSSRAPSSCRAASLAPPRPASATSAGSPTSPAPPLHM 679
Query: 87 ASRKEARSPFLARRVGLTSRRGDREGSRQCGQRAW 121
S + FL V ++R+GDR +R+ G R+W
Sbjct: 680 VSTDGCSAAFL---VLDSARKGDRRSARRGGPRSW 711
>gi|238859651 pleckstrin homology domain containing family A member
4 isoform 1 [Homo sapiens]
Length = 779
Score = 37.4 bits (85), Expect = 0.003
Identities = 26/74 (35%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 12 GTPAQVRYRRQEPRRPPAAPAETG-----PRDGSHAPERERHSPGTATRIRAPLRAPRCR 66
G Q R PRR P + A G P+ S P + HS G+ T ++ P R P R
Sbjct: 285 GPQRQTLSRPPTPRRGPPSEAGGGKPPRSPQHWSQEPRTQAHS-GSPTYLQLPPRPPGTR 343
Query: 67 YHTTLLPREPLKTT 80
LLP PL++T
Sbjct: 344 ASMVLLPGPPLEST 357
Score = 26.9 bits (58), Expect = 3.8
Identities = 23/75 (30%), Positives = 26/75 (34%), Gaps = 3/75 (4%)
Query: 23 EPRRPPAAPAETGPRDGSHAPERERHSPGTATRIRAPLRAPRCRYHTTLLPREPLKTTAS 82
+PR P GP PE R G + R R R LL P S
Sbjct: 161 QPRSPARPQPGEGPGGPGGPPEVSRGEEGRISESPEVTRLSRGRGRPRLLTPSPTTDLHS 220
Query: 83 GLCLASRKEARSPFL 97
GL + ARSP L
Sbjct: 221 GL---QMRRARSPDL 232
>gi|239751471 PREDICTED: hypothetical protein XP_002347846 [Homo
sapiens]
Length = 870
Score = 37.4 bits (85), Expect = 0.003
Identities = 39/102 (38%), Positives = 50/102 (49%), Gaps = 18/102 (17%)
Query: 20 RRQEPR-RPPAAPAETGPRDGSHAPERERHSPGTATRIRAPLRAPRCRYHTTLLPREPLK 78
R+ PR +PPA+PA + P APE+E +P R RA APR LP P
Sbjct: 747 RKGAPREQPPASPAAS-PCQAPRAPEKETEAP--RLRGRATAVAPR------PLPAAP-- 795
Query: 79 TTASGLCLASRKEARSPFLARRVGLTSRRGDREGSRQCGQRA 120
SGLC+ ARS R +G+ S++G GS C RA
Sbjct: 796 -GFSGLCVLQPFPARS----RGLGVPSQQGP-TGSPGCRDRA 831
>gi|239745974 PREDICTED: hypothetical protein XP_002343630 [Homo
sapiens]
Length = 538
Score = 37.4 bits (85), Expect = 0.003
Identities = 39/102 (38%), Positives = 50/102 (49%), Gaps = 18/102 (17%)
Query: 20 RRQEPR-RPPAAPAETGPRDGSHAPERERHSPGTATRIRAPLRAPRCRYHTTLLPREPLK 78
R+ PR +PPA+PA + P APE+E +P R RA APR LP P
Sbjct: 415 RKGAPREQPPASPAAS-PCQAPRAPEKETEAP--RLRGRATAVAPR------PLPAAP-- 463
Query: 79 TTASGLCLASRKEARSPFLARRVGLTSRRGDREGSRQCGQRA 120
SGLC+ ARS R +G+ S++G GS C RA
Sbjct: 464 -GFSGLCVLQPFPARS----RGLGVPSQQGP-TGSPGCRDRA 499
>gi|239741753 PREDICTED: hypothetical protein [Homo sapiens]
Length = 274
Score = 35.8 bits (81), Expect = 0.008
Identities = 34/102 (33%), Positives = 40/102 (39%), Gaps = 13/102 (12%)
Query: 27 PPAAPAETGPRDGSHAPERERHSPGTATRIRAPLRAPRCRYHTTLLPREPLKTTASGLCL 86
PP APA TGP G A +R R P R+R P T L R T LCL
Sbjct: 139 PPPAPARTGPA-GKAAADRGRPGPAAGRRVRRSPSFPPFLLAQTRLGR----TGPLALCL 193
Query: 87 ------ASR--KEARSPFLARRVGLTSRRGDREGSRQCGQRA 120
A R +R R G +R G EG R+ + A
Sbjct: 194 LLLLHGAMRLGGGSREKLACGRAGRAARTGRGEGGRRAEEEA 235
>gi|239755952 PREDICTED: hypothetical protein [Homo sapiens]
Length = 233
Score = 33.5 bits (75), Expect = 0.040
Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 12/97 (12%)
Query: 27 PPAAPAETGPRDGSHAPE--RERHSPGTATRIRAPLRAPRCRYHTTLLPREPLKTTASGL 84
PP+ P G +++ +PGTA R LRA LP P + ++ L
Sbjct: 109 PPSTPTTPNMDRGIQVLSALKKKKNPGTARLARGALRA-------ATLPGSPARLSSPSL 161
Query: 85 CLASRKEARSPFLARRVGLTSRRGDREGSRQCGQRAW 121
CLAS +R P R + SRR G+R +
Sbjct: 162 CLASNFASRYPLRRRPL---SRRSPGWSPAPRGRRGY 195
>gi|169167066 PREDICTED: hypothetical protein [Homo sapiens]
Length = 262
Score = 33.5 bits (75), Expect = 0.040
Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 2 ASDPRTGDLAGTPAQVRYRRQEPRRPPAAPAETGPRDGSHAP 43
A PR G +G R RR PR PP A +E GPR + AP
Sbjct: 138 AGRPRLGQESGQGVAARRRRALPRHPPLA-SERGPRTHTPAP 178
>gi|113416187 PREDICTED: hypothetical protein [Homo sapiens]
Length = 262
Score = 33.5 bits (75), Expect = 0.040
Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 2 ASDPRTGDLAGTPAQVRYRRQEPRRPPAAPAETGPRDGSHAP 43
A PR G +G R RR PR PP A +E GPR + AP
Sbjct: 138 AGRPRLGQESGQGVAARRRRALPRHPPLA-SERGPRTHTPAP 178
>gi|113415691 PREDICTED: hypothetical protein [Homo sapiens]
Length = 262
Score = 33.5 bits (75), Expect = 0.040
Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 2 ASDPRTGDLAGTPAQVRYRRQEPRRPPAAPAETGPRDGSHAP 43
A PR G +G R RR PR PP A +E GPR + AP
Sbjct: 138 AGRPRLGQESGQGVAARRRRALPRHPPLA-SERGPRTHTPAP 178
>gi|21389533 BTB (POZ) domain containing 14A [Homo sapiens]
Length = 587
Score = 32.7 bits (73), Expect = 0.069
Identities = 24/72 (33%), Positives = 30/72 (41%), Gaps = 17/72 (23%)
Query: 14 PAQVRYRRQEPRRPPAAPA-------ETGPRDGSHAPERERHSPGTATRIRAPLRAPRCR 66
P R + + PPA P ETGPRDG + GT APL+ PR
Sbjct: 168 PLLTRVKHEAMELPPAGPGLAPKRPLETGPRDGVAVAAGAAVAAGT-----APLKLPRVS 222
Query: 67 YH-----TTLLP 73
Y+ TL+P
Sbjct: 223 YYGVPSLATLIP 234
>gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 32.0 bits (71), Expect = 0.12
Identities = 36/119 (30%), Positives = 40/119 (33%), Gaps = 14/119 (11%)
Query: 3 SDPRTGDLAGTPAQVRYRRQEPRRPPAAPAETGPRDGSHAPERERHSPGTATRIRAPLRA 62
S P PA P RPPA + GPR E G A PL
Sbjct: 196 SQPPLPQETAAPAPQPGPTAPPARPPAYESREGPRG-----RAESRGSGPAQPAHLPLPG 250
Query: 63 PRCRYHTTLLPREPLKT-TASGLCLASRKEARSPFLARRVGLTS---RRG--DREGSRQ 115
P H+ P L+ A G R R P A G + RRG DR GS Q
Sbjct: 251 PA---HSPAPPAPELREGRAPGSTAGRRPRPREPQAAEESGCATVGLRRGDCDRAGSSQ 306
>gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 32.0 bits (71), Expect = 0.12
Identities = 36/119 (30%), Positives = 40/119 (33%), Gaps = 14/119 (11%)
Query: 3 SDPRTGDLAGTPAQVRYRRQEPRRPPAAPAETGPRDGSHAPERERHSPGTATRIRAPLRA 62
S P PA P RPPA + GPR E G A PL
Sbjct: 196 SQPPLPQETAAPAPQPGPTAPPARPPAYESREGPRG-----RAESRGSGPAQPAHLPLPG 250
Query: 63 PRCRYHTTLLPREPLKT-TASGLCLASRKEARSPFLARRVGLTS---RRG--DREGSRQ 115
P H+ P L+ A G R R P A G + RRG DR GS Q
Sbjct: 251 PA---HSPAPPAPELREGRAPGSTAGRRPRPREPQAAEESGCATVGLRRGDCDRAGSSQ 306
>gi|239509031 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 32.0 bits (71), Expect = 0.12
Identities = 36/119 (30%), Positives = 40/119 (33%), Gaps = 14/119 (11%)
Query: 3 SDPRTGDLAGTPAQVRYRRQEPRRPPAAPAETGPRDGSHAPERERHSPGTATRIRAPLRA 62
S P PA P RPPA + GPR E G A PL
Sbjct: 196 SQPPLPQETAAPAPQPGPTAPPARPPAYESREGPRG-----RAESRGSGPAQPAHLPLPG 250
Query: 63 PRCRYHTTLLPREPLKT-TASGLCLASRKEARSPFLARRVGLTS---RRG--DREGSRQ 115
P H+ P L+ A G R R P A G + RRG DR GS Q
Sbjct: 251 PA---HSPAPPAPELREGRAPGSTAGRRPRPREPQAAEESGCATVGLRRGDCDRAGSSQ 306
>gi|13129048 oligonucleotide/oligosaccharide-binding fold containing
2B [Homo sapiens]
Length = 211
Score = 32.0 bits (71), Expect = 0.12
Identities = 20/62 (32%), Positives = 21/62 (33%), Gaps = 6/62 (9%)
Query: 2 ASDPRTGDLAGTPAQVRYRRQEPRRPPAAPAETGPRDGSHAPERERHSPGTATRIRAPLR 61
AS P TG A +PA PP GP G H P H P T P
Sbjct: 133 ASQPTTGPSAASPASENQNGNGLSAPP------GPGGGPHPPHTPSHPPSTRITRSQPNH 186
Query: 62 AP 63
P
Sbjct: 187 TP 188
>gi|151301137 AT-hook transcription factor [Homo sapiens]
Length = 1439
Score = 32.0 bits (71), Expect = 0.12
Identities = 31/99 (31%), Positives = 43/99 (43%), Gaps = 11/99 (11%)
Query: 26 RPPAAPAETGPRDGSHAPERERHSPGTATRIRAPLRAPRCRYHTTLLPREPLKTTASGLC 85
RP +PA G GS + ER P +I P R R ++ +PRE L+ L
Sbjct: 1119 RPADSPATWGSHYGSKSTERLPGEPRGEEQIVPP---GRQRARSSSVPREVLR-----LS 1170
Query: 86 LASRKEARS-PFLARRVGLT--SRRGDREGSRQCGQRAW 121
L+S E S P + + T S + R+G R G W
Sbjct: 1171 LSSESELPSLPLFSEKSKTTKDSPQAARDGKRGVGSAGW 1209
>gi|239748344 PREDICTED: NK1 homeobox 1 [Homo sapiens]
Length = 653
Score = 31.6 bits (70), Expect = 0.15
Identities = 28/96 (29%), Positives = 35/96 (36%), Gaps = 10/96 (10%)
Query: 5 PRTGDLAGTPAQVRYRRQEPRRPPAAPA----ETGPRDGSHAPERERHSPGTATRIRAPL 60
PR TPAQ + R P RPP P+ GPR+ S +PG AP
Sbjct: 15 PRGATPTCTPAQPSWARLRPTRPPEPPSTRQRPPGPRENSPV------APGPPGGAAAPG 68
Query: 61 RAPRCRYHTTLLPREPLKTTASGLCLASRKEARSPF 96
A T + K T S + AR+ F
Sbjct: 69 GAGTTPQGTATAAKPKRKRTGSDSKSGKPRRARTAF 104
>gi|58218966 hypothetical protein LOC339201 [Homo sapiens]
Length = 193
Score = 31.6 bits (70), Expect = 0.15
Identities = 22/55 (40%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Query: 26 RPPAAPAETGPRDGSHAPERERHSPGTATRIRAPLRAPRCRYHTT----LLPREP 76
RP P R G A R RH+PGT + AP RAP R + LLP P
Sbjct: 108 RPQRTPCSAQSRPGWCAGPRRRHAPGTEPHV-APGRAPPPRAGASPGSRLLPGSP 161
>gi|239756937 PREDICTED: hypothetical protein [Homo sapiens]
Length = 294
Score = 31.2 bits (69), Expect = 0.20
Identities = 21/62 (33%), Positives = 26/62 (41%)
Query: 12 GTPAQVRYRRQEPRRPPAAPAETGPRDGSHAPERERHSPGTATRIRAPLRAPRCRYHTTL 71
G ++ R RR+ R PPA P G AP + + G A AP AP TL
Sbjct: 84 GPGSRGRERRRGSRDPPAGPVARARARGRSAPGSAQPASGAAGPAAAPEAAPPAWDPATL 143
Query: 72 LP 73
P
Sbjct: 144 PP 145
>gi|239751449 PREDICTED: hypothetical protein XP_002347867 [Homo
sapiens]
Length = 315
Score = 31.2 bits (69), Expect = 0.20
Identities = 21/62 (33%), Positives = 26/62 (41%)
Query: 12 GTPAQVRYRRQEPRRPPAAPAETGPRDGSHAPERERHSPGTATRIRAPLRAPRCRYHTTL 71
G ++ R RR+ R PPA P G AP + + G A AP AP TL
Sbjct: 84 GPGSRGRERRRGSRDPPAGPVARARARGRSAPGSAQPASGAAGPAAAPEAAPPAWDPATL 143
Query: 72 LP 73
P
Sbjct: 144 PP 145
>gi|239745954 PREDICTED: hypothetical protein XP_002343623 [Homo
sapiens]
Length = 315
Score = 31.2 bits (69), Expect = 0.20
Identities = 21/62 (33%), Positives = 26/62 (41%)
Query: 12 GTPAQVRYRRQEPRRPPAAPAETGPRDGSHAPERERHSPGTATRIRAPLRAPRCRYHTTL 71
G ++ R RR+ R PPA P G AP + + G A AP AP TL
Sbjct: 84 GPGSRGRERRRGSRDPPAGPVARARARGRSAPGSAQPASGAAGPAAAPEAAPPAWDPATL 143
Query: 72 LP 73
P
Sbjct: 144 PP 145
>gi|154816198 transcription elongation factor B polypeptide 3C-like
[Homo sapiens]
Length = 546
Score = 31.2 bits (69), Expect = 0.20
Identities = 20/72 (27%), Positives = 24/72 (33%)
Query: 5 PRTGDLAGTPAQVRYRRQEPRRPPAAPAETGPRDGSHAPERERHSPGTATRIRAPLRAPR 64
P +P+ R+ RR P PR S P ER P A P R P
Sbjct: 113 PENATAPRSPSHSPEHRRTARRTPPGQQRPHPRSPSREPRAERKRPRMAPADSGPHRDPP 172
Query: 65 CRYHTTLLPREP 76
R +P P
Sbjct: 173 TRTAPLPMPEGP 184
>gi|156938279 transcription elongation factor B polypeptide 3C [Homo
sapiens]
Length = 546
Score = 31.2 bits (69), Expect = 0.20
Identities = 20/72 (27%), Positives = 24/72 (33%)
Query: 5 PRTGDLAGTPAQVRYRRQEPRRPPAAPAETGPRDGSHAPERERHSPGTATRIRAPLRAPR 64
P +P+ R+ RR P PR S P ER P A P R P
Sbjct: 113 PENATAPRSPSHSPEHRRTARRTPPGQQRPHPRSPSREPRAERKRPRMAPADSGPHRDPP 172
Query: 65 CRYHTTLLPREP 76
R +P P
Sbjct: 173 TRTAPLPMPEGP 184
>gi|115511030 hypothetical protein LOC115004 [Homo sapiens]
Length = 522
Score = 31.2 bits (69), Expect = 0.20
Identities = 27/101 (26%), Positives = 37/101 (36%), Gaps = 6/101 (5%)
Query: 23 EPRRPPAAPAETGPRDGSHAPERERHS----PGTATRIRAPLRAPRCRYHTTLLPREPLK 78
+P PAAP P+ G P R+ S T+ R P+RA R P+
Sbjct: 33 DPTESPAAPEAALPKAGKFGPARKSGSRQKKSAPDTQERPPVRATGAR--AKKAPQRAQD 90
Query: 79 TTASGLCLASRKEARSPFLARRVGLTSRRGDREGSRQCGQR 119
T S A E P AR L+ R+ +C +
Sbjct: 91 TQPSDATSAPGAEGLEPPAAREPALSRAGSCRQRGARCSTK 131
>gi|162329612 phosphodiesterase 4A isoform 3 [Homo sapiens]
Length = 825
Score = 30.8 bits (68), Expect = 0.26
Identities = 30/90 (33%), Positives = 37/90 (41%), Gaps = 20/90 (22%)
Query: 21 RQEPRRPPAAPAETGPRDGSHAP----ERERHSPGTATRIRA---PLRAPRCRYHTTLLP 73
R PR P A TGP +H P + RH PG + A P +P
Sbjct: 8 RARPRPPALALPPTGPESLTHFPFSDEDTRRHPPGRSVSFEAENGPTPSP---------G 58
Query: 74 REPLKTTAS-GLCL---ASRKEARSPFLAR 99
R PL + AS GL L A+ + R FL R
Sbjct: 59 RSPLDSQASPGLVLHAGAATSQRRESFLYR 88
>gi|153792110 HEG homolog 1 [Homo sapiens]
Length = 1381
Score = 30.8 bits (68), Expect = 0.26
Identities = 17/55 (30%), Positives = 23/55 (41%)
Query: 10 LAGTPAQVRYRRQEPRRPPAAPAETGPRDGSHAPERERHSPGTATRIRAPLRAPR 64
LAG +++ R+ R PP P + P PG AT+ RAPR
Sbjct: 47 LAGAGLELQLERRPEREPPPTPPRERRGPATPGPSYRAPEPGAATQRGPSGRAPR 101
>gi|169207312 PREDICTED: hypothetical protein [Homo sapiens]
Length = 414
Score = 30.4 bits (67), Expect = 0.34
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 8/66 (12%)
Query: 26 RPPAAPAETGPRDGSHAPERERHSPGTATRIRAPLRAPRCRYHTTLLPREPLKTTASGLC 85
R P A GP+ G + ER H P R+ AP R PR P +SGL
Sbjct: 171 RGPNTSATPGPQKGRGSAERTNHIPKDKQRVAAPPPPER--------PRVPFCRGSSGLS 222
Query: 86 LASRKE 91
+ + E
Sbjct: 223 VPTPPE 228
Score = 28.1 bits (61), Expect = 1.7
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 8 GDLAGTPAQVRYRRQEPRRPPAAPAETGPRDGSHAPERERHSPG 51
G G P+ RR EPRR A E G R+GS P +PG
Sbjct: 349 GPAQGPPS----RRDEPRRVVIAARECG-REGSELPPSGEETPG 387
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.133 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,945,723
Number of Sequences: 37866
Number of extensions: 311939
Number of successful extensions: 2237
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 209
Number of HSP's that attempted gapping in prelim test: 2054
Number of HSP's gapped (non-prelim): 384
length of query: 122
length of database: 18,247,518
effective HSP length: 89
effective length of query: 33
effective length of database: 14,877,444
effective search space: 490955652
effective search space used: 490955652
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.