Guide to the Human Genome
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Name: LOC727918 Sequence: fasta or formatted (122aa) NCBI GI: 113427839
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {122aa} PREDICTED: hypothetical protein
alt mRNA {122aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.3         15           2
 C cysteine            2.5          3           1
 D aspartate           3.3          4           1
 E glutamate           5.7          7           1
 F phenylalanine       0.8          1           1
 G glycine             8.2         10           1
 H histidine           2.5          3           1
 I isoleucine          0.8          1           1
 K lysine              1.6          2           1
 L leucine             7.4          9           2
 M methionine          0.8          1           1
 N asparagine          0.0          0           0
 P proline            11.5         14           2
 Q glutamine           3.3          4           1
 R arginine           19.7         24           2
 S serine              6.6          8           1
 T threonine           8.2         10           2
 V valine              1.6          2           1
 W tryptophan          0.8          1           1
 Y tyrosine            2.5          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC727918             1.000   PREDICTED: hypothetical protein 
LOC727918             1.000   PREDICTED: hypothetical protein 
LOC100133305          0.057   PREDICTED: hypothetical protein 
LOC100133305          0.057   PREDICTED: hypothetical protein 
PLEKHA4               0.052   pleckstrin homology domain containing family A memb...
LOC100291076          0.052   PREDICTED: hypothetical protein XP_002347846 
LOC100287104          0.052   PREDICTED: hypothetical protein XP_002343630 
LOC646509             0.048   PREDICTED: hypothetical protein 
FLJ31485              0.035   PREDICTED: hypothetical protein 
FLJ20021              0.035   PREDICTED: hypothetical protein 
FLJ20021              0.035   PREDICTED: hypothetical protein 
FLJ20021              0.035   PREDICTED: hypothetical protein 
NACC2                 0.035   BTB (POZ) domain containing 14A 
LOC100127891          0.030   PREDICTED: similar to hCG2042508 
LOC100127891          0.030   PREDICTED: similar to hCG2042508 
LOC100127891          0.030   PREDICTED: similar to hCG2042508 
OBFC2B                0.030   oligonucleotide/oligosaccharide-binding fold contain...
AKNA                  0.030   AT-hook transcription factor 
NKX1-1                0.030   PREDICTED: NK1 homeobox 1 
C17orf65              0.030   hypothetical protein LOC339201 
LOC100292172          0.026   PREDICTED: hypothetical protein 
LOC100289763          0.026   PREDICTED: hypothetical protein XP_002347867 
LOC100289681          0.026   PREDICTED: hypothetical protein XP_002343623 
TCEB3CL               0.026   transcription elongation factor B polypeptide 3C-li...
TCEB3C                0.026   transcription elongation factor B polypeptide 3C [H...
C6orf150              0.026   hypothetical protein LOC115004 
PDE4A                 0.026   phosphodiesterase 4A isoform 3 
HEG1                  0.026   HEG homolog 1 
LOC645602             0.022   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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