Guide to the Human Genome
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Name: KCNIP1 Sequence: fasta or formatted (216aa) NCBI GI: 7657247
Description:

Kv channel interacting protein 1 isoform 2

Referenced in:

Potassium Channels

Other entries for this name:
alt prot [225aa] Kv channel interacting protein 1 isoform 3
alt prot [227aa] Kv channel interacting protein 1 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.7          8           1
 C cysteine            1.4          3           1
 D aspartate           7.9         17           2
 E glutamate           7.9         17           2
 F phenylalanine       6.9         15           2
 G glycine             5.1         11           1
 H histidine           2.3          5           1
 I isoleucine          4.2          9           1
 K lysine              7.4         16           1
 L leucine             7.9         17           2
 M methionine          5.1         11           2
 N asparagine          4.6         10           1
 P proline             2.8          6           1
 Q glutamine           6.0         13           1
 R arginine            4.2          9           2
 S serine              4.2          9           2
 T threonine           7.4         16           2
 V valine              6.5         14           2
 W tryptophan          0.5          1           1
 Y tyrosine            4.2          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Kv channel interacting protein 1 isoform 2 
KCNIP1                0.978   Kv channel interacting protein 1 isoform 1 
KCNIP1                0.916   Kv channel interacting protein 1 isoform 3 
KCNIP4                0.737   Kv channel interacting protein 4 isoform 2 
KCNIP4                0.732   Kv channel interacting protein 4 isoform 4 
KCNIP4                0.730   Kv channel interacting protein 4 isoform 5 
KCNIP4                0.727   Kv channel interacting protein 4 isoform 1 
KCNIP2                0.701   Kv channel interacting protein 2 isoform 5 
KCNIP4                0.699   Kv channel interacting protein 4 isoform 3 
KCNIP4                0.699   Kv channel interacting protein 4 isoform 3 
KCNIP2                0.699   Kv channel interacting protein 2 isoform 6 
KCNIP2                0.699   Kv channel interacting protein 2 isoform 3 
KCNIP2                0.699   Kv channel interacting protein 2 isoform 1 
KCNIP2                0.699   Kv channel interacting protein 2 isoform 2 
KCNIP2                0.682   Kv channel interacting protein 2 isoform 4 
KCNIP3                0.672   Kv channel interacting protein 3 isoform 2 
KCNIP3                0.672   Kv channel interacting protein 3 isoform 1 
KCNIP2                0.474   Kv channel interacting protein 2 isoform 7 
FREQ                  0.368   frequenin homolog isoform 1 
HPCA                  0.361   hippocalcin 
HPCAL1                0.352   hippocalcin-like 1 
HPCAL1                0.352   hippocalcin-like 1 
VSNL1                 0.352   visinin-like 1 
FREQ                  0.340   frequenin homolog isoform 2 
NCALD                 0.340   neurocalcin delta 
NCALD                 0.340   neurocalcin delta 
NCALD                 0.340   neurocalcin delta 
NCALD                 0.340   neurocalcin delta 
NCALD                 0.340   neurocalcin delta 
NCALD                 0.340   neurocalcin delta 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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