Guide to the Human Genome
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Search of human proteins with 21071052

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|21071052 helicase-like transcription factor [Homo sapiens]
         (1009 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|21071052 helicase-like transcription factor [Homo sapiens]        2036   0.0  
gi|21071054 helicase-like transcription factor [Homo sapiens]        2036   0.0  
gi|40807471 transcription termination factor, RNA polymerase II ...   257   3e-68
gi|21914927 helicase, lymphoid-specific [Homo sapiens]                150   4e-36
gi|190358536 SWI/SNF-related, matrix-associated actin-dependent ...   145   2e-34
gi|190358532 SWI/SNF-related, matrix-associated actin-dependent ...   145   2e-34
gi|190358534 SWI/SNF-related, matrix-associated actin-dependent ...   144   4e-34
gi|111548666 SNF2 histone linker PHD RING helicase isoform a [Ho...   111   4e-24
gi|27436873 SNF2 histone linker PHD RING helicase isoform b [Hom...   111   4e-24
gi|118421089 chromodomain helicase DNA binding protein 2 isoform...    99   3e-20
gi|192807323 SWI/SNF-related matrix-associated actin-dependent r...    98   3e-20
gi|192807320 SWI/SNF-related matrix-associated actin-dependent r...    98   3e-20
gi|192807318 SWI/SNF-related matrix-associated actin-dependent r...    98   3e-20
gi|192807316 SWI/SNF-related matrix-associated actin-dependent r...    98   3e-20
gi|192807314 SWI/SNF-related matrix-associated actin-dependent r...    98   3e-20
gi|192807312 SWI/SNF-related matrix-associated actin-dependent r...    98   3e-20
gi|21071056 SWI/SNF-related matrix-associated actin-dependent re...    98   3e-20
gi|58331268 excision repair protein ERCC6-like [Homo sapiens]          98   3e-20
gi|51599156 chromodomain helicase DNA binding protein 4 [Homo sa...    97   6e-20
gi|164419749 SWI/SNF-related matrix-associated actin-dependent r...    97   6e-20
gi|21071044 SWI/SNF-related matrix-associated actin-dependent re...    97   6e-20
gi|24308089 chromodomain helicase DNA binding protein 5 [Homo sa...    97   6e-20
gi|52630326 chromodomain helicase DNA binding protein 3 isoform ...    96   1e-19
gi|52630322 chromodomain helicase DNA binding protein 3 isoform ...    96   1e-19
gi|158420731 chromodomain helicase DNA binding protein 3 isoform...    96   1e-19
gi|38708321 INO80 complex homolog 1 [Homo sapiens]                     96   1e-19
gi|146219843 Snf2-related CBP activator protein [Homo sapiens]         96   1e-19
gi|48255900 SWI/SNF-related matrix-associated actin-dependent re...    96   2e-19
gi|48255898 SWI/SNF-related matrix-associated actin-dependent re...    96   2e-19
gi|6912622 RAD54 homolog B [Homo sapiens]                              94   6e-19

>gi|21071052 helicase-like transcription factor [Homo sapiens]
          Length = 1009

 Score = 2036 bits (5276), Expect = 0.0
 Identities = 1009/1009 (100%), Positives = 1009/1009 (100%)

Query: 1    MSWMFKRDPVWKYLQTVQYGVHGNFPRLSYPTFFPRFEFQDVIPPDDFLTSDEEVDSVLF 60
            MSWMFKRDPVWKYLQTVQYGVHGNFPRLSYPTFFPRFEFQDVIPPDDFLTSDEEVDSVLF
Sbjct: 1    MSWMFKRDPVWKYLQTVQYGVHGNFPRLSYPTFFPRFEFQDVIPPDDFLTSDEEVDSVLF 60

Query: 61   GSLRGHVVGLRYYTGVVNNNEMVALQRDPNNPYDKNAIKVNNVNGNQVGHLKKELAGALA 120
            GSLRGHVVGLRYYTGVVNNNEMVALQRDPNNPYDKNAIKVNNVNGNQVGHLKKELAGALA
Sbjct: 61   GSLRGHVVGLRYYTGVVNNNEMVALQRDPNNPYDKNAIKVNNVNGNQVGHLKKELAGALA 120

Query: 121  YIMDNKLAQIEGVVPFGANNAFTMPLHMTFWGKEENRKAVSDQLKKHGFKLGPAPKTLGF 180
            YIMDNKLAQIEGVVPFGANNAFTMPLHMTFWGKEENRKAVSDQLKKHGFKLGPAPKTLGF
Sbjct: 121  YIMDNKLAQIEGVVPFGANNAFTMPLHMTFWGKEENRKAVSDQLKKHGFKLGPAPKTLGF 180

Query: 181  NLESGWGSGRAGPSYSMPVHAAVQMTTEQLKTEFDKLFEDLKEDDKTHEMEPAEAIETPL 240
            NLESGWGSGRAGPSYSMPVHAAVQMTTEQLKTEFDKLFEDLKEDDKTHEMEPAEAIETPL
Sbjct: 181  NLESGWGSGRAGPSYSMPVHAAVQMTTEQLKTEFDKLFEDLKEDDKTHEMEPAEAIETPL 240

Query: 241  LPHQKQALAWMVSRENSKELPPFWEQRNDLYYNTITNFSEKDRPENVHGGILADDMGLGK 300
            LPHQKQALAWMVSRENSKELPPFWEQRNDLYYNTITNFSEKDRPENVHGGILADDMGLGK
Sbjct: 241  LPHQKQALAWMVSRENSKELPPFWEQRNDLYYNTITNFSEKDRPENVHGGILADDMGLGK 300

Query: 301  TLTAIAVILTNFHDGRPLPIERVKKNLLKKEYNVNDDSMKLGGNNTSEKADGLSKDASRC 360
            TLTAIAVILTNFHDGRPLPIERVKKNLLKKEYNVNDDSMKLGGNNTSEKADGLSKDASRC
Sbjct: 301  TLTAIAVILTNFHDGRPLPIERVKKNLLKKEYNVNDDSMKLGGNNTSEKADGLSKDASRC 360

Query: 361  SEQPSISDIKEKSKFRMSELSSSRPKRRKTAVQYIESSDSEEIETSELPQKMKGKLKNVQ 420
            SEQPSISDIKEKSKFRMSELSSSRPKRRKTAVQYIESSDSEEIETSELPQKMKGKLKNVQ
Sbjct: 361  SEQPSISDIKEKSKFRMSELSSSRPKRRKTAVQYIESSDSEEIETSELPQKMKGKLKNVQ 420

Query: 421  SETKGRAKAGSSKVIEDVAFACALTSSVPTTKKKMLKKGACAVEGSKKTDVEERPRTTLI 480
            SETKGRAKAGSSKVIEDVAFACALTSSVPTTKKKMLKKGACAVEGSKKTDVEERPRTTLI
Sbjct: 421  SETKGRAKAGSSKVIEDVAFACALTSSVPTTKKKMLKKGACAVEGSKKTDVEERPRTTLI 480

Query: 481  ICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRIREPALLSKQDIVLTTYNILTHDYGT 540
            ICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRIREPALLSKQDIVLTTYNILTHDYGT
Sbjct: 481  ICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRIREPALLSKQDIVLTTYNILTHDYGT 540

Query: 541  KGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLESERRWVLTGTPIQNSLKDLWSLL 600
            KGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLESERRWVLTGTPIQNSLKDLWSLL
Sbjct: 541  KGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLESERRWVLTGTPIQNSLKDLWSLL 600

Query: 601  SFLKLKPFIDREWWHRTIQRPVTMGDEGGLRRLQSLIKNITLRRTKTSKIKGKPVLELPE 660
            SFLKLKPFIDREWWHRTIQRPVTMGDEGGLRRLQSLIKNITLRRTKTSKIKGKPVLELPE
Sbjct: 601  SFLKLKPFIDREWWHRTIQRPVTMGDEGGLRRLQSLIKNITLRRTKTSKIKGKPVLELPE 660

Query: 661  RKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHYADVLGLLLRLRQICCHTY 720
            RKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHYADVLGLLLRLRQICCHTY
Sbjct: 661  RKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHYADVLGLLLRLRQICCHTY 720

Query: 721  LLTNAVSSNGPSGNDTPEELRKKLIRKMKLILSSGSDEECAICLDSLTVPVITHCAHVFC 780
            LLTNAVSSNGPSGNDTPEELRKKLIRKMKLILSSGSDEECAICLDSLTVPVITHCAHVFC
Sbjct: 721  LLTNAVSSNGPSGNDTPEELRKKLIRKMKLILSSGSDEECAICLDSLTVPVITHCAHVFC 780

Query: 781  KPCICQVIQNEQPHAKCPLCRNDIHEDNLLECPPEELARDSEKKSDMEWTSSSKINALMH 840
            KPCICQVIQNEQPHAKCPLCRNDIHEDNLLECPPEELARDSEKKSDMEWTSSSKINALMH
Sbjct: 781  KPCICQVIQNEQPHAKCPLCRNDIHEDNLLECPPEELARDSEKKSDMEWTSSSKINALMH 840

Query: 841  ALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQKKRVESIQCFQNT 900
            ALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQKKRVESIQCFQNT
Sbjct: 841  ALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQKKRVESIQCFQNT 900

Query: 901  EAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHRLGQKQEVIITKF 960
            EAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHRLGQKQEVIITKF
Sbjct: 901  EAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHRLGQKQEVIITKF 960

Query: 961  IVKDSVEENMLKIQNKKRELAAGAFGTKKPNADEMKQAKINEIRTLIDL 1009
            IVKDSVEENMLKIQNKKRELAAGAFGTKKPNADEMKQAKINEIRTLIDL
Sbjct: 961  IVKDSVEENMLKIQNKKRELAAGAFGTKKPNADEMKQAKINEIRTLIDL 1009


>gi|21071054 helicase-like transcription factor [Homo sapiens]
          Length = 1009

 Score = 2036 bits (5276), Expect = 0.0
 Identities = 1009/1009 (100%), Positives = 1009/1009 (100%)

Query: 1    MSWMFKRDPVWKYLQTVQYGVHGNFPRLSYPTFFPRFEFQDVIPPDDFLTSDEEVDSVLF 60
            MSWMFKRDPVWKYLQTVQYGVHGNFPRLSYPTFFPRFEFQDVIPPDDFLTSDEEVDSVLF
Sbjct: 1    MSWMFKRDPVWKYLQTVQYGVHGNFPRLSYPTFFPRFEFQDVIPPDDFLTSDEEVDSVLF 60

Query: 61   GSLRGHVVGLRYYTGVVNNNEMVALQRDPNNPYDKNAIKVNNVNGNQVGHLKKELAGALA 120
            GSLRGHVVGLRYYTGVVNNNEMVALQRDPNNPYDKNAIKVNNVNGNQVGHLKKELAGALA
Sbjct: 61   GSLRGHVVGLRYYTGVVNNNEMVALQRDPNNPYDKNAIKVNNVNGNQVGHLKKELAGALA 120

Query: 121  YIMDNKLAQIEGVVPFGANNAFTMPLHMTFWGKEENRKAVSDQLKKHGFKLGPAPKTLGF 180
            YIMDNKLAQIEGVVPFGANNAFTMPLHMTFWGKEENRKAVSDQLKKHGFKLGPAPKTLGF
Sbjct: 121  YIMDNKLAQIEGVVPFGANNAFTMPLHMTFWGKEENRKAVSDQLKKHGFKLGPAPKTLGF 180

Query: 181  NLESGWGSGRAGPSYSMPVHAAVQMTTEQLKTEFDKLFEDLKEDDKTHEMEPAEAIETPL 240
            NLESGWGSGRAGPSYSMPVHAAVQMTTEQLKTEFDKLFEDLKEDDKTHEMEPAEAIETPL
Sbjct: 181  NLESGWGSGRAGPSYSMPVHAAVQMTTEQLKTEFDKLFEDLKEDDKTHEMEPAEAIETPL 240

Query: 241  LPHQKQALAWMVSRENSKELPPFWEQRNDLYYNTITNFSEKDRPENVHGGILADDMGLGK 300
            LPHQKQALAWMVSRENSKELPPFWEQRNDLYYNTITNFSEKDRPENVHGGILADDMGLGK
Sbjct: 241  LPHQKQALAWMVSRENSKELPPFWEQRNDLYYNTITNFSEKDRPENVHGGILADDMGLGK 300

Query: 301  TLTAIAVILTNFHDGRPLPIERVKKNLLKKEYNVNDDSMKLGGNNTSEKADGLSKDASRC 360
            TLTAIAVILTNFHDGRPLPIERVKKNLLKKEYNVNDDSMKLGGNNTSEKADGLSKDASRC
Sbjct: 301  TLTAIAVILTNFHDGRPLPIERVKKNLLKKEYNVNDDSMKLGGNNTSEKADGLSKDASRC 360

Query: 361  SEQPSISDIKEKSKFRMSELSSSRPKRRKTAVQYIESSDSEEIETSELPQKMKGKLKNVQ 420
            SEQPSISDIKEKSKFRMSELSSSRPKRRKTAVQYIESSDSEEIETSELPQKMKGKLKNVQ
Sbjct: 361  SEQPSISDIKEKSKFRMSELSSSRPKRRKTAVQYIESSDSEEIETSELPQKMKGKLKNVQ 420

Query: 421  SETKGRAKAGSSKVIEDVAFACALTSSVPTTKKKMLKKGACAVEGSKKTDVEERPRTTLI 480
            SETKGRAKAGSSKVIEDVAFACALTSSVPTTKKKMLKKGACAVEGSKKTDVEERPRTTLI
Sbjct: 421  SETKGRAKAGSSKVIEDVAFACALTSSVPTTKKKMLKKGACAVEGSKKTDVEERPRTTLI 480

Query: 481  ICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRIREPALLSKQDIVLTTYNILTHDYGT 540
            ICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRIREPALLSKQDIVLTTYNILTHDYGT
Sbjct: 481  ICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRIREPALLSKQDIVLTTYNILTHDYGT 540

Query: 541  KGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLESERRWVLTGTPIQNSLKDLWSLL 600
            KGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLESERRWVLTGTPIQNSLKDLWSLL
Sbjct: 541  KGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLESERRWVLTGTPIQNSLKDLWSLL 600

Query: 601  SFLKLKPFIDREWWHRTIQRPVTMGDEGGLRRLQSLIKNITLRRTKTSKIKGKPVLELPE 660
            SFLKLKPFIDREWWHRTIQRPVTMGDEGGLRRLQSLIKNITLRRTKTSKIKGKPVLELPE
Sbjct: 601  SFLKLKPFIDREWWHRTIQRPVTMGDEGGLRRLQSLIKNITLRRTKTSKIKGKPVLELPE 660

Query: 661  RKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHYADVLGLLLRLRQICCHTY 720
            RKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHYADVLGLLLRLRQICCHTY
Sbjct: 661  RKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHYADVLGLLLRLRQICCHTY 720

Query: 721  LLTNAVSSNGPSGNDTPEELRKKLIRKMKLILSSGSDEECAICLDSLTVPVITHCAHVFC 780
            LLTNAVSSNGPSGNDTPEELRKKLIRKMKLILSSGSDEECAICLDSLTVPVITHCAHVFC
Sbjct: 721  LLTNAVSSNGPSGNDTPEELRKKLIRKMKLILSSGSDEECAICLDSLTVPVITHCAHVFC 780

Query: 781  KPCICQVIQNEQPHAKCPLCRNDIHEDNLLECPPEELARDSEKKSDMEWTSSSKINALMH 840
            KPCICQVIQNEQPHAKCPLCRNDIHEDNLLECPPEELARDSEKKSDMEWTSSSKINALMH
Sbjct: 781  KPCICQVIQNEQPHAKCPLCRNDIHEDNLLECPPEELARDSEKKSDMEWTSSSKINALMH 840

Query: 841  ALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQKKRVESIQCFQNT 900
            ALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQKKRVESIQCFQNT
Sbjct: 841  ALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQKKRVESIQCFQNT 900

Query: 901  EAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHRLGQKQEVIITKF 960
            EAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHRLGQKQEVIITKF
Sbjct: 901  EAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHRLGQKQEVIITKF 960

Query: 961  IVKDSVEENMLKIQNKKRELAAGAFGTKKPNADEMKQAKINEIRTLIDL 1009
            IVKDSVEENMLKIQNKKRELAAGAFGTKKPNADEMKQAKINEIRTLIDL
Sbjct: 961  IVKDSVEENMLKIQNKKRELAAGAFGTKKPNADEMKQAKINEIRTLIDL 1009


>gi|40807471 transcription termination factor, RNA polymerase II [Homo
            sapiens]
          Length = 1162

 Score =  257 bits (657), Expect = 3e-68
 Identities = 175/580 (30%), Positives = 288/580 (49%), Gaps = 110/580 (18%)

Query: 452  KKKMLKKGACAVEGSKKTDVEERPRTTLIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYG 511
            KK+  +K       SK    +     TLIICP S++ +W ++  + + S+  L  Y+Y+G
Sbjct: 618  KKEEKEKSTALTWLSKDDSCDFTSHGTLIICPASLIHHWKNEVEKRVNSN-KLRVYLYHG 676

Query: 512  PDRIREPALLSKQDIVLTTYNILTHDYGTKGD---------------SPLHSIRWLRVIL 556
            P+R     +LS  DIV+TTY+++  +  T                  +PL  I W R+IL
Sbjct: 677  PNRDSRARVLSTYDIVITTYSLVAKEIPTNKQEAEIPGANLNVEGTSTPLLRIAWARIIL 736

Query: 557  DEGHAIRNPNAQQTKAVLDLESERRWVLTGTPIQNSLKDLWSLLSFLKLKPFIDREWWHR 616
            DE H ++NP  Q + AV  L++  RW +TGTPIQN+L D++SLL FL+  PF +   W  
Sbjct: 737  DEAHNVKNPRVQTSIAVCKLQACARWAVTGTPIQNNLLDMYSLLKFLRCSPFDEFNLWRS 796

Query: 617  TIQRPVTMGDEGGLRRLQSLIKNITLRRTKTS-KIKGKPVLELPERKVFIQHITLSDEER 675
             +      G + G  RL  L K++ LRRTK      G+P++ LP+RK  + H+ LS++E 
Sbjct: 797  QVDN----GSKKGGERLSILTKSLLLRRTKDQLDSTGRPLVILPQRKFQLHHLKLSEDEE 852

Query: 676  KIYQSVKNEGRATIGRYFNE-----------------------GTVLAHYAD-------- 704
             +Y       R+ +  Y                          G+    +++        
Sbjct: 853  TVYNVFFARSRSALQSYLKRHESRGNQSGRSPNNPFSRVALEFGSEEPRHSEAADSPRSS 912

Query: 705  ---VLGLLLRLRQICCHTYLLTNAVSSNGPSGNDTPEELRKKLIRKMKLILSSGSDEECA 761
               +L  LLRLRQ CCH  LL +A+          P EL+ +      L+LS        
Sbjct: 913  TVHILSQLLRLRQCCCHLSLLKSALD---------PMELKGE-----GLVLSLEEQ---- 954

Query: 762  ICLDSLTVPVITHCAHVFCKPCICQVIQNEQPHAKCPLCRNDIHEDNLLECPPEELARDS 821
              L +LT+                  +++ +P +   L           +    E  R+S
Sbjct: 955  --LSALTL----------------SELRDSEPSSTVSL------NGTFFKMELFEGMRES 990

Query: 822  EKKSDMEWTSSSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRL 881
             K           I++L+  L  +++ + + KS++VSQ+T  L ++ + LK  G  +  +
Sbjct: 991  TK-----------ISSLLAELEAIQRNSASQKSVIVSQWTNMLKVVALHLKKHGLTYATI 1039

Query: 882  DGSMAQKKRVESIQCFQNTEAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAEDQ 941
            DGS+  K+R++ ++ F ++    P +ML+SL AGGVGLNL+  + +FL+D  WNP+ EDQ
Sbjct: 1040 DGSVNPKQRMDLVEAFNHSR--GPQVMLISLLAGGVGLNLTGGNHLFLLDMHWNPSLEDQ 1097

Query: 942  CFDRCHRLGQKQEVIITKFIVKDSVEENMLKIQNKKRELA 981
              DR +R+GQ+++V+I +F+ + +VEE +L++Q KK++LA
Sbjct: 1098 ACDRIYRVGQQKDVVIHRFVCEGTVEEKILQLQEKKKDLA 1137



 Score = 59.3 bits (142), Expect = 2e-08
 Identities = 43/113 (38%), Positives = 56/113 (49%), Gaps = 33/113 (29%)

Query: 199 VHAAVQMTTEQLKTEFDKLFEDLKE-DDKTHEMEPAEAIETPLLPHQKQALAWMVSRENS 257
           VHA  ++T+E +     +L   L+    +T   E    ++ PLL HQKQALAW++ RE+ 
Sbjct: 532 VHAVWKITSEAI----GQLHRSLESCPGETVVAEDPAGLKVPLLLHQKQALAWLLWRESQ 587

Query: 258 KELPPFWEQRNDLYYNTITNFSEKDRPENVHGGILADDMGLGKTLTAIAVILT 310
           K                              GGILADDMGLGKTLT IA+ILT
Sbjct: 588 KP----------------------------QGGILADDMGLGKTLTMIALILT 612


>gi|21914927 helicase, lymphoid-specific [Homo sapiens]
          Length = 838

 Score =  150 bits (380), Expect = 4e-36
 Identities = 160/690 (23%), Positives = 288/690 (41%), Gaps = 98/690 (14%)

Query: 319 PIERVKKNLLKKEYNVND-----DSMKLGGNNTSEKADGLSKDASRCSEQPSISDIKEKS 373
           P+ R K+    + YN+++     + + +   N  E  D  S   + C E   +   K+ +
Sbjct: 123 PVMRKKRGREDESYNISEVMSKEEILSVAKKNKKENEDENSSSTNLCVED--LQKNKDSN 180

Query: 374 KFRMSELSSSRPKRRKTAVQYIESSDSEEIETSELPQKMKGKLKNVQSETKGRAKA---- 429
                 LS +  +  K     +   + + +   +      G ++  Q E     +     
Sbjct: 181 SIIKDRLSETVRQNTKFFFDPVRKCNGQPVPFQQPKHFTGGVMRWYQVEGMEWLRMLWEN 240

Query: 430 GSSKVIEDVAFACALTSSVPTTKKKMLKKGACAVEGSKKTDVEERPRTTLIICPLSVLSN 489
           G + ++ D       T     T   M+++G               P   L+  PLS L N
Sbjct: 241 GINGILAD-EMGLGKTVQCIATIALMIQRGV--------------PGPFLVCGPLSTLPN 285

Query: 490 WIDQFGQHIKSDVHLNFYVYYGPDRIREPAL---------LSKQDIVLTTYNILTHDYGT 540
           W+ +F +       +   +Y+G    R+  +         L    +V+T++ I   D   
Sbjct: 286 WMAEFKRFTPD---IPTMLYHGTQEERQKLVRNIYKRKGTLQIHPVVITSFEIAMRDRNA 342

Query: 541 KGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLESERRWVLTGTPIQNSLKDLWSLL 600
                L    W  +I+DEGH I+N   +  + +    ++ + +LTGTP+QN+L +LWSLL
Sbjct: 343 -----LQHCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNNLSELWSLL 397

Query: 601 SFLKLKPFIDR---EWWHRTIQRPVTMGD-------EGGLRRLQSLIKNITLRRTKTSKI 650
           +FL    F D    E W        T  D       +  L  L  ++    LRR     +
Sbjct: 398 NFLLPDVFDDLKSFESWFDITSLSETAEDIIAKEREQNVLHMLHQILTPFLLRR-----L 452

Query: 651 KGKPVLELPERKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHYADVLGLLL 710
           K    LE+P ++  + +  LS ++   Y ++ N    TI   F             G   
Sbjct: 453 KSDVALEVPPKREVVVYAPLSKKQEIFYTAIVNR---TIANMFGSSEKETIELSPTGRPK 509

Query: 711 RLRQICCHTYLLTNAVSSNGPSGNDTPEELRKKLIRKMKLILSSGSDEECAICLDSLTVP 770
           R  +            S N    +D P EL K + +     +    D E A+    + +P
Sbjct: 510 RRTR-----------KSINYSKIDDFPNELEKLISQ-----IQPEVDRERAVV--EVNIP 551

Query: 771 VITHCAHVFCKPCICQVIQNEQPHAKCPLCRNDIHEDNLLECPPEELARDSEKKSDMEWT 830
           V +          +   +QN        L R   +   L+E P + + ++ +   ++  T
Sbjct: 552 VESE---------VNLKLQNIMM-----LLRKCCNHPYLIEYPIDPVTQEFKIDEELV-T 596

Query: 831 SSSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQKKR 890
           +S K   L   L +L+K+   +  L+ SQ T+ L ++        F F+RLDGSM+  +R
Sbjct: 597 NSGKFLILDRMLPELKKRGHKV--LLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSER 654

Query: 891 VESIQCFQNTEAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHRLG 950
            +++  F NT+     I L+S +AGG+G+NL+AA  V + D  WNP ++ Q  DRCHR+G
Sbjct: 655 EKNMHSF-NTDP-EVFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIG 712

Query: 951 QKQEVIITKFIVKDSVEENMLKIQNKKREL 980
           Q + V++ + +  +++++ +++    KR+L
Sbjct: 713 QTKPVVVYRLVTANTIDQKIVERAAAKRKL 742



 Score = 35.8 bits (81), Expect = 0.21
 Identities = 19/35 (54%), Positives = 21/35 (60%)

Query: 285 ENVHGGILADDMGLGKTLTAIAVILTNFHDGRPLP 319
           EN   GILAD+MGLGKT+  IA I      G P P
Sbjct: 239 ENGINGILADEMGLGKTVQCIATIALMIQRGVPGP 273


>gi|190358536 SWI/SNF-related, matrix-associated actin-dependent
           regulator of chromatin, subfamily a, containing DEAD/H
           box 1 isoform a [Homo sapiens]
          Length = 1028

 Score =  145 bits (366), Expect = 2e-34
 Identities = 135/520 (25%), Positives = 233/520 (44%), Gaps = 87/520 (16%)

Query: 479 LIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRIREPALLS------KQDIVLTTYN 532
           LI+ P S + NW+ +      +   L    YYG    R+    +        ++++TTYN
Sbjct: 549 LIVVPASTIDNWLREVNLWCPT---LKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYN 605

Query: 533 ILTHDYGTKGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLESERRWVLTGTPIQNS 592
                   +  S    ++    I DEGH ++N  + + + ++ + +  R +LTGTP+QN+
Sbjct: 606 CAISSSDDR--SLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNN 663

Query: 593 LKDLWSLLSFLKLKPFIDR-EWWHRTIQRPVTMGDEGGL------RRLQSLIKNITLRRT 645
           L +L SLL+F+    F        R         DE  +         + +IK   LRR 
Sbjct: 664 LLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFILRRV 723

Query: 646 KTSKIKGKPVLELPERKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHYADV 705
           K   +K     +LP +K  I+   +S+++ ++Y  + N  + +I     E        ++
Sbjct: 724 KEEVLK-----QLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNT-----EM 773

Query: 706 LGLLLRLRQICCHTYLLTNAVSSNGPSGNDTPEELRKKLIRKMKLILSSGSDEECAICLD 765
             ++++LR++  H  L              T E+L++                     + 
Sbjct: 774 CNVMMQLRKMANHPLLHRQYY---------TAEKLKE---------------------MS 803

Query: 766 SLTVPVITHCAHVFCKPCIC----QVIQNEQPHAKCPLCRNDIHEDNLLECPPEELARDS 821
            L +   THC      P +     +V+ + + H    LC+   H +N             
Sbjct: 804 QLMLKEPTHCE---ANPDLIFEDMEVMTDFELHV---LCKQYRHINNF------------ 845

Query: 822 EKKSDMEWT-SSSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTR 880
             + DM+    S K   L   L++L++K   +  ++ SQFT  L ++E+ LK     + R
Sbjct: 846 --QLDMDLILDSGKFRVLGCILSELKQKGDRV--VLFSQFTMMLDILEVLLKHHQHRYLR 901

Query: 881 LDGSMAQKKRVESIQCFQNTEAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAED 940
           LDG     +R+  I  F NT+     + LLS KAGG+G+NL++A+ V L D   NP  + 
Sbjct: 902 LDGKTQISERIHLIDEF-NTDMDI-FVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDK 959

Query: 941 QCFDRCHRLGQKQEVIITKFIVKDSVEENMLKIQNKKREL 980
           Q  DRCHR+GQ +EV++ K I + ++EE+MLKI  +K +L
Sbjct: 960 QAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKL 999



 Score = 34.7 bits (78), Expect = 0.46
 Identities = 18/34 (52%), Positives = 23/34 (67%), Gaps = 2/34 (5%)

Query: 288 HG--GILADDMGLGKTLTAIAVILTNFHDGRPLP 319
           HG  GILAD+MGLGKT+ AIA +   + +G   P
Sbjct: 514 HGLNGILADEMGLGKTIQAIAFLAYLYQEGNNGP 547


>gi|190358532 SWI/SNF-related, matrix-associated actin-dependent
           regulator of chromatin, subfamily a, containing DEAD/H
           box 1 isoform a [Homo sapiens]
          Length = 1028

 Score =  145 bits (366), Expect = 2e-34
 Identities = 135/520 (25%), Positives = 233/520 (44%), Gaps = 87/520 (16%)

Query: 479 LIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRIREPALLS------KQDIVLTTYN 532
           LI+ P S + NW+ +      +   L    YYG    R+    +        ++++TTYN
Sbjct: 549 LIVVPASTIDNWLREVNLWCPT---LKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYN 605

Query: 533 ILTHDYGTKGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLESERRWVLTGTPIQNS 592
                   +  S    ++    I DEGH ++N  + + + ++ + +  R +LTGTP+QN+
Sbjct: 606 CAISSSDDR--SLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNN 663

Query: 593 LKDLWSLLSFLKLKPFIDR-EWWHRTIQRPVTMGDEGGL------RRLQSLIKNITLRRT 645
           L +L SLL+F+    F        R         DE  +         + +IK   LRR 
Sbjct: 664 LLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFILRRV 723

Query: 646 KTSKIKGKPVLELPERKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHYADV 705
           K   +K     +LP +K  I+   +S+++ ++Y  + N  + +I     E        ++
Sbjct: 724 KEEVLK-----QLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNT-----EM 773

Query: 706 LGLLLRLRQICCHTYLLTNAVSSNGPSGNDTPEELRKKLIRKMKLILSSGSDEECAICLD 765
             ++++LR++  H  L              T E+L++                     + 
Sbjct: 774 CNVMMQLRKMANHPLLHRQYY---------TAEKLKE---------------------MS 803

Query: 766 SLTVPVITHCAHVFCKPCIC----QVIQNEQPHAKCPLCRNDIHEDNLLECPPEELARDS 821
            L +   THC      P +     +V+ + + H    LC+   H +N             
Sbjct: 804 QLMLKEPTHCE---ANPDLIFEDMEVMTDFELHV---LCKQYRHINNF------------ 845

Query: 822 EKKSDMEWT-SSSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTR 880
             + DM+    S K   L   L++L++K   +  ++ SQFT  L ++E+ LK     + R
Sbjct: 846 --QLDMDLILDSGKFRVLGCILSELKQKGDRV--VLFSQFTMMLDILEVLLKHHQHRYLR 901

Query: 881 LDGSMAQKKRVESIQCFQNTEAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAED 940
           LDG     +R+  I  F NT+     + LLS KAGG+G+NL++A+ V L D   NP  + 
Sbjct: 902 LDGKTQISERIHLIDEF-NTDMDI-FVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDK 959

Query: 941 QCFDRCHRLGQKQEVIITKFIVKDSVEENMLKIQNKKREL 980
           Q  DRCHR+GQ +EV++ K I + ++EE+MLKI  +K +L
Sbjct: 960 QAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKL 999



 Score = 34.7 bits (78), Expect = 0.46
 Identities = 18/34 (52%), Positives = 23/34 (67%), Gaps = 2/34 (5%)

Query: 288 HG--GILADDMGLGKTLTAIAVILTNFHDGRPLP 319
           HG  GILAD+MGLGKT+ AIA +   + +G   P
Sbjct: 514 HGLNGILADEMGLGKTIQAIAFLAYLYQEGNNGP 547


>gi|190358534 SWI/SNF-related, matrix-associated actin-dependent
           regulator of chromatin, subfamily a, containing DEAD/H
           box 1 isoform b [Homo sapiens]
          Length = 1026

 Score =  144 bits (363), Expect = 4e-34
 Identities = 135/520 (25%), Positives = 233/520 (44%), Gaps = 89/520 (17%)

Query: 479 LIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRIREPALLS------KQDIVLTTYN 532
           LI+ P S + NW+ +      +   L    YYG    R+    +        ++++TTYN
Sbjct: 549 LIVVPASTIDNWLREVNLWCPT---LKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYN 605

Query: 533 ILTHDYGTKGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLESERRWVLTGTPIQNS 592
                   +  S    ++    I DEGH ++N  + + + ++ + +  R +LTGTP+QN+
Sbjct: 606 CAISSSDDR--SLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNN 663

Query: 593 LKDLWSLLSFLKLKPFIDR-EWWHRTIQRPVTMGDEGGL------RRLQSLIKNITLRRT 645
           L +L SLL+F+    F        R         DE  +         + +IK   LRR 
Sbjct: 664 LLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFILRRV 723

Query: 646 KTSKIKGKPVLELPERKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHYADV 705
           K   +K     +LP +K  I+   +S+++ ++Y  + N  + +I         L    ++
Sbjct: 724 KEEVLK-----QLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINN-------LEKNTEM 771

Query: 706 LGLLLRLRQICCHTYLLTNAVSSNGPSGNDTPEELRKKLIRKMKLILSSGSDEECAICLD 765
             ++++LR++  H  L              T E+L++                     + 
Sbjct: 772 CNVMMQLRKMANHPLLHRQYY---------TAEKLKE---------------------MS 801

Query: 766 SLTVPVITHCAHVFCKPCIC----QVIQNEQPHAKCPLCRNDIHEDNLLECPPEELARDS 821
            L +   THC      P +     +V+ + + H    LC+   H +N             
Sbjct: 802 QLMLKEPTHCE---ANPDLIFEDMEVMTDFELHV---LCKQYRHINNF------------ 843

Query: 822 EKKSDMEWT-SSSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTR 880
             + DM+    S K   L   L++L++K   +  ++ SQFT  L ++E+ LK     + R
Sbjct: 844 --QLDMDLILDSGKFRVLGCILSELKQKGDRV--VLFSQFTMMLDILEVLLKHHQHRYLR 899

Query: 881 LDGSMAQKKRVESIQCFQNTEAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAED 940
           LDG     +R+  I  F NT+     + LLS KAGG+G+NL++A+ V L D   NP  + 
Sbjct: 900 LDGKTQISERIHLIDEF-NTDMDI-FVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDK 957

Query: 941 QCFDRCHRLGQKQEVIITKFIVKDSVEENMLKIQNKKREL 980
           Q  DRCHR+GQ +EV++ K I + ++EE+MLKI  +K +L
Sbjct: 958 QAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKL 997



 Score = 34.7 bits (78), Expect = 0.46
 Identities = 18/34 (52%), Positives = 23/34 (67%), Gaps = 2/34 (5%)

Query: 288 HG--GILADDMGLGKTLTAIAVILTNFHDGRPLP 319
           HG  GILAD+MGLGKT+ AIA +   + +G   P
Sbjct: 514 HGLNGILADEMGLGKTIQAIAFLAYLYQEGNNGP 547


>gi|111548666 SNF2 histone linker PHD RING helicase isoform a [Homo
           sapiens]
          Length = 1687

 Score =  111 bits (277), Expect = 4e-24
 Identities = 81/275 (29%), Positives = 122/275 (44%), Gaps = 39/275 (14%)

Query: 476 RTTLIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYG--PDRIREPALLSKQDIVLTTYNI 533
           R TLII P S+   W+D+  +H++S   L   VY G   D   +P  L++QDIV+ TY++
Sbjct: 716 RATLIISPSSICHQWVDEINRHVRSS-SLRVLVYQGVKKDGFLQPHFLAEQDIVIITYDV 774

Query: 534 LT---------HDYGTKG------------DSPLHSIRWLRVILDEGHAIRNPNAQQTKA 572
           L          H     G             SPL ++ W R+ LDE   +  P  +  + 
Sbjct: 775 LRSELNYVDIPHSNSEDGRRLRNQKRYMAIPSPLVAVEWWRICLDEAQMVECPTVKAAEM 834

Query: 573 VLDLESERRWVLTGTPIQNSLKDLWSLLSFLKLKPFIDREWWHRTIQRPVTMGDEGGLRR 632
              L    RW ++GTP+Q  L+DL+ L+ FL ++P+  + WW R + RP    +    + 
Sbjct: 835 AQRLSGINRWCISGTPVQRGLEDLFGLVVFLGIEPYCVKHWWVRLLYRPYCKKNP---QH 891

Query: 633 LQSLIKNITLRRTKTSKIKGKPVLELPERKVFIQHITLSDEERKIY---QSVKNEGRATI 689
           L S I  I  R  K   I     +++P +   I  +  S  ER  Y     V  +     
Sbjct: 892 LYSFIAKILWRSAKKDVI---DQIQIPPQTEEIHWLHFSPVERHFYHRQHEVCCQDVVVK 948

Query: 690 GRYFNEGTVLAHYAD------VLGLLLRLRQICCH 718
            R  ++  +     D      +L  LLRLRQ CCH
Sbjct: 949 LRKISDWALKLSSLDRRTVTSILYPLLRLRQACCH 983



 Score = 94.4 bits (233), Expect = 5e-19
 Identities = 65/221 (29%), Positives = 105/221 (47%), Gaps = 16/221 (7%)

Query: 758  EECAICLDSLTVP-VITHCAHVFCKPCICQVIQ-----NEQPHAKCPLCRNDIHEDNLLE 811
            E C IC   L     +  C H FC  CI  +I+     + +   KC +CR       +  
Sbjct: 1434 EPCPICARQLGKQWAVLTCGHCFCNECISIIIEQYSVGSHRSSIKCAICRQTTSHKEISY 1493

Query: 812  CPPEELARDSEKKSDMEWTSSSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPL 871
                E A + E+   ++ + S+K+ A++  L  ++ ++P  K+LV S +   L +I   L
Sbjct: 1494 VFTSEKA-NQEEDIPVKGSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKAL 1552

Query: 872  KASGFVFTRLDGSMAQKKRVESIQCFQNTEAGSP--TIMLLSLKAGGVGLNLSAASRVFL 929
              +   F       AQ  RV++ Q   +     P   I+LL L  G  GL +  A+ V L
Sbjct: 1553 TDNNMEF-------AQISRVKTFQENLSAFKRDPQINILLLPLHTGSNGLTIIEATHVLL 1605

Query: 930  MDPAWNPAAEDQCFDRCHRLGQKQEVIITKFIVKDSVEENM 970
            ++P  NPA E Q   R HR+GQ +  I+ +F++K ++EE M
Sbjct: 1606 VEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATIEERM 1646



 Score = 52.8 bits (125), Expect = 2e-06
 Identities = 43/148 (29%), Positives = 69/148 (46%), Gaps = 31/148 (20%)

Query: 213 EFDKLFEDLKEDDKTHEMEPAE--------AIETPLLPHQKQALAWMVSRENSKELPP-- 262
           + D+L+  +K+   TH+ E           A+   L P+Q++A+ WM+ +E  +  P   
Sbjct: 272 DIDELYHFVKQ---THQQETQSIQVDVQHPALIPVLRPYQREAVNWMLQQECFRSSPATE 328

Query: 263 -----FWEQ-----RNDLYYNTITNFSEKDRPEN---VHGGILADDMGLGKTLTAIAVIL 309
                 W +        LYYN  T    ++ P +   + GGILAD+MGLGKT+  +A+IL
Sbjct: 329 SALHFLWREIVTSEGLKLYYNPYTGCIIREYPNSGPQLLGGILADEMGLGKTVEVLALIL 388

Query: 310 TNF-----HDGRPLPIERVKKNLLKKEY 332
           T+       D   LP  +V    +   Y
Sbjct: 389 THTRQDVKQDALTLPEGKVVNYFIPSHY 416


>gi|27436873 SNF2 histone linker PHD RING helicase isoform b [Homo
           sapiens]
          Length = 1659

 Score =  111 bits (277), Expect = 4e-24
 Identities = 81/275 (29%), Positives = 122/275 (44%), Gaps = 39/275 (14%)

Query: 476 RTTLIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYG--PDRIREPALLSKQDIVLTTYNI 533
           R TLII P S+   W+D+  +H++S   L   VY G   D   +P  L++QDIV+ TY++
Sbjct: 716 RATLIISPSSICHQWVDEINRHVRSS-SLRVLVYQGVKKDGFLQPHFLAEQDIVIITYDV 774

Query: 534 LT---------HDYGTKG------------DSPLHSIRWLRVILDEGHAIRNPNAQQTKA 572
           L          H     G             SPL ++ W R+ LDE   +  P  +  + 
Sbjct: 775 LRSELNYVDIPHSNSEDGRRLRNQKRYMAIPSPLVAVEWWRICLDEAQMVECPTVKAAEM 834

Query: 573 VLDLESERRWVLTGTPIQNSLKDLWSLLSFLKLKPFIDREWWHRTIQRPVTMGDEGGLRR 632
              L    RW ++GTP+Q  L+DL+ L+ FL ++P+  + WW R + RP    +    + 
Sbjct: 835 AQRLSGINRWCISGTPVQRGLEDLFGLVVFLGIEPYCVKHWWVRLLYRPYCKKNP---QH 891

Query: 633 LQSLIKNITLRRTKTSKIKGKPVLELPERKVFIQHITLSDEERKIY---QSVKNEGRATI 689
           L S I  I  R  K   I     +++P +   I  +  S  ER  Y     V  +     
Sbjct: 892 LYSFIAKILWRSAKKDVI---DQIQIPPQTEEIHWLHFSPVERHFYHRQHEVCCQDVVVK 948

Query: 690 GRYFNEGTVLAHYAD------VLGLLLRLRQICCH 718
            R  ++  +     D      +L  LLRLRQ CCH
Sbjct: 949 LRKISDWALKLSSLDRRTVTSILYPLLRLRQACCH 983



 Score = 94.4 bits (233), Expect = 5e-19
 Identities = 65/221 (29%), Positives = 105/221 (47%), Gaps = 16/221 (7%)

Query: 758  EECAICLDSLTVP-VITHCAHVFCKPCICQVIQ-----NEQPHAKCPLCRNDIHEDNLLE 811
            E C IC   L     +  C H FC  CI  +I+     + +   KC +CR       +  
Sbjct: 1434 EPCPICARQLGKQWAVLTCGHCFCNECISIIIEQYSVGSHRSSIKCAICRQTTSHKEISY 1493

Query: 812  CPPEELARDSEKKSDMEWTSSSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPL 871
                E A + E+   ++ + S+K+ A++  L  ++ ++P  K+LV S +   L +I   L
Sbjct: 1494 VFTSEKA-NQEEDIPVKGSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKAL 1552

Query: 872  KASGFVFTRLDGSMAQKKRVESIQCFQNTEAGSP--TIMLLSLKAGGVGLNLSAASRVFL 929
              +   F       AQ  RV++ Q   +     P   I+LL L  G  GL +  A+ V L
Sbjct: 1553 TDNNMEF-------AQISRVKTFQENLSAFKRDPQINILLLPLHTGSNGLTIIEATHVLL 1605

Query: 930  MDPAWNPAAEDQCFDRCHRLGQKQEVIITKFIVKDSVEENM 970
            ++P  NPA E Q   R HR+GQ +  I+ +F++K ++EE M
Sbjct: 1606 VEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATIEERM 1646



 Score = 52.8 bits (125), Expect = 2e-06
 Identities = 43/148 (29%), Positives = 69/148 (46%), Gaps = 31/148 (20%)

Query: 213 EFDKLFEDLKEDDKTHEMEPAE--------AIETPLLPHQKQALAWMVSRENSKELPP-- 262
           + D+L+  +K+   TH+ E           A+   L P+Q++A+ WM+ +E  +  P   
Sbjct: 272 DIDELYHFVKQ---THQQETQSIQVDVQHPALIPVLRPYQREAVNWMLQQECFRSSPATE 328

Query: 263 -----FWEQ-----RNDLYYNTITNFSEKDRPEN---VHGGILADDMGLGKTLTAIAVIL 309
                 W +        LYYN  T    ++ P +   + GGILAD+MGLGKT+  +A+IL
Sbjct: 329 SALHFLWREIVTSEGLKLYYNPYTGCIIREYPNSGPQLLGGILADEMGLGKTVEVLALIL 388

Query: 310 TNF-----HDGRPLPIERVKKNLLKKEY 332
           T+       D   LP  +V    +   Y
Sbjct: 389 THTRQDVKQDALTLPEGKVVNYFIPSHY 416


>gi|118421089 chromodomain helicase DNA binding protein 2 isoform 1
           [Homo sapiens]
          Length = 1828

 Score = 98.6 bits (244), Expect = 3e-20
 Identities = 82/285 (28%), Positives = 134/285 (47%), Gaps = 37/285 (12%)

Query: 479 LIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGP----DRIREPALLSKQ------DIVL 528
           LI+ PLS L++W  +F         +N  VY G     + IRE   +  Q      + ++
Sbjct: 537 LIVVPLSTLTSWQREFEIWAPE---INVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALI 593

Query: 529 TTYNILTHDYGTKGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLESERRWVLTGTP 588
           TTY IL  D    G     SI W  + +DE H ++N ++   K ++D +S  R ++TGTP
Sbjct: 594 TTYEILLKDKTVLG-----SINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTP 648

Query: 589 IQNSLKDLWSLLSFLKLKPFIDREWWHRTIQRPVTMGDEGGLRRLQSLIKNITLRRTKTS 648
           +QNSLK+LWSLL F+  + F   E+W    +     G E G + L  +++   LRR K  
Sbjct: 649 LQNSLKELWSLLHFIMPEKF---EFW-EDFEEDHGKGRENGYQSLHKVLEPFLLRRVKKD 704

Query: 649 KIKGKPVLELPERKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHYADVLGL 708
             K      LP +   I  + +S  +++ Y+ +       + +     T     +  L +
Sbjct: 705 VEK-----SLPAKVEQILRVEMSALQKQYYKWILTRNYKALAKGTRGST-----SGFLNI 754

Query: 709 LLRLRQICCHTYLLTNAVSSNGPSGNDTPEELRKKLIRKM-KLIL 752
           ++ L++ C H YL+     +   +G    +E+   LIR   KLIL
Sbjct: 755 VMELKKCCNHCYLIKPPEENERENG----QEILLSLIRSSGKLIL 795



 Score = 92.4 bits (228), Expect = 2e-18
 Identities = 58/169 (34%), Positives = 93/169 (55%), Gaps = 4/169 (2%)

Query: 813 PPEELARDSEKKSDMEWT-SSSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPL 871
           PPEE  R++ ++  +    SS K+  L   LT LR++   +  L+ SQ    L ++   L
Sbjct: 770 PPEENERENGQEILLSLIRSSGKLILLDKLLTRLRERGNRV--LIFSQMVRMLDILAEYL 827

Query: 872 KASGFVFTRLDGSMAQKKRVESIQCFQNTEAGSPTIMLLSLKAGGVGLNLSAASRVFLMD 931
               + F RLDGS+  + R +++  F N +       LLS +AGG+G+NL++A  V + D
Sbjct: 828 TIKHYPFQRLDGSIKGEIRKQALDHF-NADGSEDFCFLLSTRAGGLGINLASADTVVIFD 886

Query: 932 PAWNPAAEDQCFDRCHRLGQKQEVIITKFIVKDSVEENMLKIQNKKREL 980
             WNP  + Q   R HR+GQK++V I + + K +VEE +++   KK  L
Sbjct: 887 SDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVL 935


>gi|192807323 SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin a4 isoform A [Homo sapiens]
          Length = 1679

 Score = 98.2 bits (243), Expect = 3e-20
 Identities = 76/262 (29%), Positives = 127/262 (48%), Gaps = 22/262 (8%)

Query: 479  LIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRIREPALLS-KQDIVLTTYNILTHD 537
            LII PLS LSNW  +F +   S V +++       R   P L S K +++LTTY     +
Sbjct: 807  LIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTY-----E 861

Query: 538  YGTKGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAV-LDLESERRWVLTGTPIQNSLKDL 596
            Y  K    L  IRW  +I+DEGH ++N + + T+ +     + RR +LTGTP+QN L +L
Sbjct: 862  YIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPEL 921

Query: 597  WSLLSFLKLKPFIDREWWHRTIQRPVTMGDEGG----------LRRLQSLIKNITLRRTK 646
            W+LL+FL    F     + +    P  M  E            +RRL  +++   LRR  
Sbjct: 922  WALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRR-- 979

Query: 647  TSKIKGKPVLELPERKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHYADVL 706
               +K +   +LPE+  ++    +S  +R +Y+ ++ +G         +         ++
Sbjct: 980  ---LKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLM 1036

Query: 707  GLLLRLRQICCHTYLLTNAVSS 728
              +++LR+IC H Y+  +   S
Sbjct: 1037 NTIMQLRKICNHPYMFQHIEES 1058



 Score = 87.8 bits (216), Expect = 5e-17
 Identities = 56/165 (33%), Positives = 85/165 (51%), Gaps = 8/165 (4%)

Query: 829  WTSSSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQK 888
            + +S K   L   L  LR  N  +  L+  Q T+ ++++E      GF + RLDG+   +
Sbjct: 1076 YRASGKFELLDRILPKLRATNHKV--LLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAE 1133

Query: 889  KRVESIQCFQNTEAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHR 948
             R   ++ F N       I LLS +AGG+GLNL +A  V + D  WNP  + Q  DR HR
Sbjct: 1134 DRGMLLKTF-NEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHR 1192

Query: 949  LGQKQEVIITKFIVKDSVEENML-----KIQNKKRELAAGAFGTK 988
            +GQ+ EV + +    +SVEE +L     K+   ++ + AG F  K
Sbjct: 1193 IGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQK 1237



 Score = 32.0 bits (71), Expect = 3.0
 Identities = 14/19 (73%), Positives = 17/19 (89%)

Query: 290 GILADDMGLGKTLTAIAVI 308
           GILAD+MGLGKT+  IA+I
Sbjct: 775 GILADEMGLGKTIQTIALI 793


>gi|192807320 SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin a4 isoform F [Homo sapiens]
          Length = 1613

 Score = 98.2 bits (243), Expect = 3e-20
 Identities = 76/262 (29%), Positives = 127/262 (48%), Gaps = 22/262 (8%)

Query: 479  LIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRIREPALLS-KQDIVLTTYNILTHD 537
            LII PLS LSNW  +F +   S V +++       R   P L S K +++LTTY     +
Sbjct: 807  LIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTY-----E 861

Query: 538  YGTKGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAV-LDLESERRWVLTGTPIQNSLKDL 596
            Y  K    L  IRW  +I+DEGH ++N + + T+ +     + RR +LTGTP+QN L +L
Sbjct: 862  YIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPEL 921

Query: 597  WSLLSFLKLKPFIDREWWHRTIQRPVTMGDEGG----------LRRLQSLIKNITLRRTK 646
            W+LL+FL    F     + +    P  M  E            +RRL  +++   LRR  
Sbjct: 922  WALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRR-- 979

Query: 647  TSKIKGKPVLELPERKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHYADVL 706
               +K +   +LPE+  ++    +S  +R +Y+ ++ +G         +         ++
Sbjct: 980  ---LKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLM 1036

Query: 707  GLLLRLRQICCHTYLLTNAVSS 728
              +++LR+IC H Y+  +   S
Sbjct: 1037 NTIMQLRKICNHPYMFQHIEES 1058



 Score = 87.8 bits (216), Expect = 5e-17
 Identities = 56/165 (33%), Positives = 85/165 (51%), Gaps = 8/165 (4%)

Query: 829  WTSSSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQK 888
            + +S K   L   L  LR  N  +  L+  Q T+ ++++E      GF + RLDG+   +
Sbjct: 1076 YRASGKFELLDRILPKLRATNHKV--LLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAE 1133

Query: 889  KRVESIQCFQNTEAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHR 948
             R   ++ F N       I LLS +AGG+GLNL +A  V + D  WNP  + Q  DR HR
Sbjct: 1134 DRGMLLKTF-NEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHR 1192

Query: 949  LGQKQEVIITKFIVKDSVEENML-----KIQNKKRELAAGAFGTK 988
            +GQ+ EV + +    +SVEE +L     K+   ++ + AG F  K
Sbjct: 1193 IGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQK 1237



 Score = 32.0 bits (71), Expect = 3.0
 Identities = 14/19 (73%), Positives = 17/19 (89%)

Query: 290 GILADDMGLGKTLTAIAVI 308
           GILAD+MGLGKT+  IA+I
Sbjct: 775 GILADEMGLGKTIQTIALI 793


>gi|192807318 SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin a4 isoform E [Homo sapiens]
          Length = 1614

 Score = 98.2 bits (243), Expect = 3e-20
 Identities = 76/262 (29%), Positives = 127/262 (48%), Gaps = 22/262 (8%)

Query: 479  LIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRIREPALLS-KQDIVLTTYNILTHD 537
            LII PLS LSNW  +F +   S V +++       R   P L S K +++LTTY     +
Sbjct: 807  LIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTY-----E 861

Query: 538  YGTKGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAV-LDLESERRWVLTGTPIQNSLKDL 596
            Y  K    L  IRW  +I+DEGH ++N + + T+ +     + RR +LTGTP+QN L +L
Sbjct: 862  YIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPEL 921

Query: 597  WSLLSFLKLKPFIDREWWHRTIQRPVTMGDEGG----------LRRLQSLIKNITLRRTK 646
            W+LL+FL    F     + +    P  M  E            +RRL  +++   LRR  
Sbjct: 922  WALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRR-- 979

Query: 647  TSKIKGKPVLELPERKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHYADVL 706
               +K +   +LPE+  ++    +S  +R +Y+ ++ +G         +         ++
Sbjct: 980  ---LKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLM 1036

Query: 707  GLLLRLRQICCHTYLLTNAVSS 728
              +++LR+IC H Y+  +   S
Sbjct: 1037 NTIMQLRKICNHPYMFQHIEES 1058



 Score = 87.8 bits (216), Expect = 5e-17
 Identities = 56/165 (33%), Positives = 85/165 (51%), Gaps = 8/165 (4%)

Query: 829  WTSSSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQK 888
            + +S K   L   L  LR  N  +  L+  Q T+ ++++E      GF + RLDG+   +
Sbjct: 1076 YRASGKFELLDRILPKLRATNHKV--LLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAE 1133

Query: 889  KRVESIQCFQNTEAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHR 948
             R   ++ F N       I LLS +AGG+GLNL +A  V + D  WNP  + Q  DR HR
Sbjct: 1134 DRGMLLKTF-NEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHR 1192

Query: 949  LGQKQEVIITKFIVKDSVEENML-----KIQNKKRELAAGAFGTK 988
            +GQ+ EV + +    +SVEE +L     K+   ++ + AG F  K
Sbjct: 1193 IGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQK 1237



 Score = 32.0 bits (71), Expect = 3.0
 Identities = 14/19 (73%), Positives = 17/19 (89%)

Query: 290 GILADDMGLGKTLTAIAVI 308
           GILAD+MGLGKT+  IA+I
Sbjct: 775 GILADEMGLGKTIQTIALI 793


>gi|192807316 SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin a4 isoform D [Homo sapiens]
          Length = 1616

 Score = 98.2 bits (243), Expect = 3e-20
 Identities = 76/262 (29%), Positives = 127/262 (48%), Gaps = 22/262 (8%)

Query: 479  LIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRIREPALLS-KQDIVLTTYNILTHD 537
            LII PLS LSNW  +F +   S V +++       R   P L S K +++LTTY     +
Sbjct: 807  LIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTY-----E 861

Query: 538  YGTKGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAV-LDLESERRWVLTGTPIQNSLKDL 596
            Y  K    L  IRW  +I+DEGH ++N + + T+ +     + RR +LTGTP+QN L +L
Sbjct: 862  YIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPEL 921

Query: 597  WSLLSFLKLKPFIDREWWHRTIQRPVTMGDEGG----------LRRLQSLIKNITLRRTK 646
            W+LL+FL    F     + +    P  M  E            +RRL  +++   LRR  
Sbjct: 922  WALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRR-- 979

Query: 647  TSKIKGKPVLELPERKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHYADVL 706
               +K +   +LPE+  ++    +S  +R +Y+ ++ +G         +         ++
Sbjct: 980  ---LKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLM 1036

Query: 707  GLLLRLRQICCHTYLLTNAVSS 728
              +++LR+IC H Y+  +   S
Sbjct: 1037 NTIMQLRKICNHPYMFQHIEES 1058



 Score = 87.8 bits (216), Expect = 5e-17
 Identities = 56/165 (33%), Positives = 85/165 (51%), Gaps = 8/165 (4%)

Query: 829  WTSSSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQK 888
            + +S K   L   L  LR  N  +  L+  Q T+ ++++E      GF + RLDG+   +
Sbjct: 1076 YRASGKFELLDRILPKLRATNHKV--LLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAE 1133

Query: 889  KRVESIQCFQNTEAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHR 948
             R   ++ F N       I LLS +AGG+GLNL +A  V + D  WNP  + Q  DR HR
Sbjct: 1134 DRGMLLKTF-NEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHR 1192

Query: 949  LGQKQEVIITKFIVKDSVEENML-----KIQNKKRELAAGAFGTK 988
            +GQ+ EV + +    +SVEE +L     K+   ++ + AG F  K
Sbjct: 1193 IGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQK 1237



 Score = 32.0 bits (71), Expect = 3.0
 Identities = 14/19 (73%), Positives = 17/19 (89%)

Query: 290 GILADDMGLGKTLTAIAVI 308
           GILAD+MGLGKT+  IA+I
Sbjct: 775 GILADEMGLGKTIQTIALI 793


>gi|192807314 SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin a4 isoform C [Homo sapiens]
          Length = 1617

 Score = 98.2 bits (243), Expect = 3e-20
 Identities = 76/262 (29%), Positives = 127/262 (48%), Gaps = 22/262 (8%)

Query: 479  LIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRIREPALLS-KQDIVLTTYNILTHD 537
            LII PLS LSNW  +F +   S V +++       R   P L S K +++LTTY     +
Sbjct: 807  LIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTY-----E 861

Query: 538  YGTKGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAV-LDLESERRWVLTGTPIQNSLKDL 596
            Y  K    L  IRW  +I+DEGH ++N + + T+ +     + RR +LTGTP+QN L +L
Sbjct: 862  YIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPEL 921

Query: 597  WSLLSFLKLKPFIDREWWHRTIQRPVTMGDEGG----------LRRLQSLIKNITLRRTK 646
            W+LL+FL    F     + +    P  M  E            +RRL  +++   LRR  
Sbjct: 922  WALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRR-- 979

Query: 647  TSKIKGKPVLELPERKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHYADVL 706
               +K +   +LPE+  ++    +S  +R +Y+ ++ +G         +         ++
Sbjct: 980  ---LKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLM 1036

Query: 707  GLLLRLRQICCHTYLLTNAVSS 728
              +++LR+IC H Y+  +   S
Sbjct: 1037 NTIMQLRKICNHPYMFQHIEES 1058



 Score = 87.8 bits (216), Expect = 5e-17
 Identities = 56/165 (33%), Positives = 85/165 (51%), Gaps = 8/165 (4%)

Query: 829  WTSSSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQK 888
            + +S K   L   L  LR  N  +  L+  Q T+ ++++E      GF + RLDG+   +
Sbjct: 1076 YRASGKFELLDRILPKLRATNHKV--LLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAE 1133

Query: 889  KRVESIQCFQNTEAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHR 948
             R   ++ F N       I LLS +AGG+GLNL +A  V + D  WNP  + Q  DR HR
Sbjct: 1134 DRGMLLKTF-NEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHR 1192

Query: 949  LGQKQEVIITKFIVKDSVEENML-----KIQNKKRELAAGAFGTK 988
            +GQ+ EV + +    +SVEE +L     K+   ++ + AG F  K
Sbjct: 1193 IGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQK 1237



 Score = 32.0 bits (71), Expect = 3.0
 Identities = 14/19 (73%), Positives = 17/19 (89%)

Query: 290 GILADDMGLGKTLTAIAVI 308
           GILAD+MGLGKT+  IA+I
Sbjct: 775 GILADEMGLGKTIQTIALI 793


>gi|192807312 SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin a4 isoform B [Homo sapiens]
          Length = 1647

 Score = 98.2 bits (243), Expect = 3e-20
 Identities = 76/262 (29%), Positives = 127/262 (48%), Gaps = 22/262 (8%)

Query: 479  LIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRIREPALLS-KQDIVLTTYNILTHD 537
            LII PLS LSNW  +F +   S V +++       R   P L S K +++LTTY     +
Sbjct: 807  LIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTY-----E 861

Query: 538  YGTKGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAV-LDLESERRWVLTGTPIQNSLKDL 596
            Y  K    L  IRW  +I+DEGH ++N + + T+ +     + RR +LTGTP+QN L +L
Sbjct: 862  YIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPEL 921

Query: 597  WSLLSFLKLKPFIDREWWHRTIQRPVTMGDEGG----------LRRLQSLIKNITLRRTK 646
            W+LL+FL    F     + +    P  M  E            +RRL  +++   LRR  
Sbjct: 922  WALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRR-- 979

Query: 647  TSKIKGKPVLELPERKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHYADVL 706
               +K +   +LPE+  ++    +S  +R +Y+ ++ +G         +         ++
Sbjct: 980  ---LKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLM 1036

Query: 707  GLLLRLRQICCHTYLLTNAVSS 728
              +++LR+IC H Y+  +   S
Sbjct: 1037 NTIMQLRKICNHPYMFQHIEES 1058



 Score = 87.8 bits (216), Expect = 5e-17
 Identities = 56/165 (33%), Positives = 85/165 (51%), Gaps = 8/165 (4%)

Query: 829  WTSSSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQK 888
            + +S K   L   L  LR  N  +  L+  Q T+ ++++E      GF + RLDG+   +
Sbjct: 1076 YRASGKFELLDRILPKLRATNHKV--LLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAE 1133

Query: 889  KRVESIQCFQNTEAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHR 948
             R   ++ F N       I LLS +AGG+GLNL +A  V + D  WNP  + Q  DR HR
Sbjct: 1134 DRGMLLKTF-NEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHR 1192

Query: 949  LGQKQEVIITKFIVKDSVEENML-----KIQNKKRELAAGAFGTK 988
            +GQ+ EV + +    +SVEE +L     K+   ++ + AG F  K
Sbjct: 1193 IGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQK 1237



 Score = 32.0 bits (71), Expect = 3.0
 Identities = 14/19 (73%), Positives = 17/19 (89%)

Query: 290 GILADDMGLGKTLTAIAVI 308
           GILAD+MGLGKT+  IA+I
Sbjct: 775 GILADEMGLGKTIQTIALI 793


>gi|21071056 SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin a4 isoform B [Homo sapiens]
          Length = 1647

 Score = 98.2 bits (243), Expect = 3e-20
 Identities = 76/262 (29%), Positives = 127/262 (48%), Gaps = 22/262 (8%)

Query: 479  LIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRIREPALLS-KQDIVLTTYNILTHD 537
            LII PLS LSNW  +F +   S V +++       R   P L S K +++LTTY     +
Sbjct: 807  LIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTY-----E 861

Query: 538  YGTKGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAV-LDLESERRWVLTGTPIQNSLKDL 596
            Y  K    L  IRW  +I+DEGH ++N + + T+ +     + RR +LTGTP+QN L +L
Sbjct: 862  YIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPEL 921

Query: 597  WSLLSFLKLKPFIDREWWHRTIQRPVTMGDEGG----------LRRLQSLIKNITLRRTK 646
            W+LL+FL    F     + +    P  M  E            +RRL  +++   LRR  
Sbjct: 922  WALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRR-- 979

Query: 647  TSKIKGKPVLELPERKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHYADVL 706
               +K +   +LPE+  ++    +S  +R +Y+ ++ +G         +         ++
Sbjct: 980  ---LKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLM 1036

Query: 707  GLLLRLRQICCHTYLLTNAVSS 728
              +++LR+IC H Y+  +   S
Sbjct: 1037 NTIMQLRKICNHPYMFQHIEES 1058



 Score = 87.8 bits (216), Expect = 5e-17
 Identities = 56/165 (33%), Positives = 85/165 (51%), Gaps = 8/165 (4%)

Query: 829  WTSSSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQK 888
            + +S K   L   L  LR  N  +  L+  Q T+ ++++E      GF + RLDG+   +
Sbjct: 1076 YRASGKFELLDRILPKLRATNHKV--LLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAE 1133

Query: 889  KRVESIQCFQNTEAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHR 948
             R   ++ F N       I LLS +AGG+GLNL +A  V + D  WNP  + Q  DR HR
Sbjct: 1134 DRGMLLKTF-NEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHR 1192

Query: 949  LGQKQEVIITKFIVKDSVEENML-----KIQNKKRELAAGAFGTK 988
            +GQ+ EV + +    +SVEE +L     K+   ++ + AG F  K
Sbjct: 1193 IGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQK 1237



 Score = 32.0 bits (71), Expect = 3.0
 Identities = 14/19 (73%), Positives = 17/19 (89%)

Query: 290 GILADDMGLGKTLTAIAVI 308
           GILAD+MGLGKT+  IA+I
Sbjct: 775 GILADEMGLGKTIQTIALI 793


>gi|58331268 excision repair protein ERCC6-like [Homo sapiens]
          Length = 1250

 Score = 98.2 bits (243), Expect = 3e-20
 Identities = 65/179 (36%), Positives = 99/179 (55%), Gaps = 5/179 (2%)

Query: 832  SSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQK-KR 890
            S K+  LM  L  LR +    ++LV SQ    L++IE  LK   F   R+DG++    +R
Sbjct: 459  SGKMIFLMDLLKRLRDEGH--QTLVFSQSRQILNIIERLLKNRHFKTLRIDGTVTHLLER 516

Query: 891  VESIQCFQNTEAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHRLG 950
             + I  FQ  +  S  + LL+ + GGVGL L+AA+RV + DP+WNPA + Q  DR +R+G
Sbjct: 517  EKRINLFQQNKDYS--VFLLTTQVGGVGLTLTAATRVVIFDPSWNPATDAQAVDRVYRIG 574

Query: 951  QKQEVIITKFIVKDSVEENMLKIQNKKRELAAGAFGTKKPNADEMKQAKINEIRTLIDL 1009
            QK+ V++ + I   +VEE + + Q  K  L     G KK       + ++ E+ T+ DL
Sbjct: 575  QKENVVVYRLITCGTVEEKIYRRQVFKDSLIRQTTGEKKNPFRYFSKQELRELFTIEDL 633



 Score = 71.6 bits (174), Expect = 3e-12
 Identities = 55/193 (28%), Positives = 93/193 (48%), Gaps = 22/193 (11%)

Query: 479 LIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRIREPALLSK----QDIVLTTYNIL 534
           L+I P ++++ W+ +F   IK    +    ++GP +      L++      +++TTY +L
Sbjct: 149 LLIMPTNLINTWVKEF---IKWTPGMRVKTFHGPSKDERTRNLNRIQQRNGVIITTYQML 205

Query: 535 THDYGTKGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLESERRWVLTGTPIQNSLK 594
            +++            W  VILDE H I+  + +       + +  R +LTGTPIQN+L+
Sbjct: 206 INNWQQLSSFRGQEFVWDYVILDEAHKIKTSSTKSAICARAIPASNRLLLTGTPIQNNLQ 265

Query: 595 DLWSLLSFL-------KLKPFIDREWWH---RTIQRPVTMGDEG-GLR---RLQSLIKNI 640
           +LWSL  F         LK F   E+ +   R  ++  T G++  G +    L ++IK  
Sbjct: 266 ELWSLFDFACQGSLLGTLKTF-KMEYENPITRAREKDATPGEKALGFKISENLMAIIKPY 324

Query: 641 TLRRTKTSKIKGK 653
            LRRTK    K K
Sbjct: 325 FLRRTKEDVQKKK 337



 Score = 33.5 bits (75), Expect = 1.0
 Identities = 15/20 (75%), Positives = 17/20 (85%)

Query: 289 GGILADDMGLGKTLTAIAVI 308
           GGILADDMGLGKT+  IA +
Sbjct: 117 GGILADDMGLGKTVQIIAFL 136


>gi|51599156 chromodomain helicase DNA binding protein 4 [Homo
            sapiens]
          Length = 1912

 Score = 97.4 bits (241), Expect = 6e-20
 Identities = 54/150 (36%), Positives = 84/150 (56%), Gaps = 3/150 (2%)

Query: 831  SSSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQKKR 890
            +S K+  L   L +L++    +  L+ SQ T  L L+E  L+  G+ + R+DG +    R
Sbjct: 1048 ASGKLLLLQKMLKNLKEGGHRV--LIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMR 1105

Query: 891  VESIQCFQNTEAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHRLG 950
             E+I  F N         LLS +AGG+G+NL+ A  V + D  WNP  + Q F R HR+G
Sbjct: 1106 QEAIDRF-NAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIG 1164

Query: 951  QKQEVIITKFIVKDSVEENMLKIQNKKREL 980
            Q ++V+I +F+ + SVEE + ++  KK  L
Sbjct: 1165 QNKKVMIYRFVTRASVEERITQVAKKKMML 1194



 Score = 72.8 bits (177), Expect = 2e-12
 Identities = 50/199 (25%), Positives = 97/199 (48%), Gaps = 18/199 (9%)

Query: 523  KQDIVLTTYNILTHDYGTKGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLESERRW 582
            K  ++LT+Y ++T D    G     SI W  +I+DE H ++N  ++  + +     + + 
Sbjct: 844  KFHVLLTSYELITIDMAILG-----SIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKL 898

Query: 583  VLTGTPIQNSLKDLWSLLSFLKLKPFIDREWWHRTIQRPVTMGDEGGLRRLQSLIKNITL 642
            +LTGTP+QN+L++L+ LL+FL  + F + E +   ++    +  E  +++L  ++    L
Sbjct: 899  LLTGTPLQNNLEELFHLLNFLTPERFHNLEGF---LEEFADIAKEDQIKKLHDMLGPHML 955

Query: 643  RRTKTSKIKGKPVLELPERKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHY 702
            RR K    K      +P +   I  + LS  ++K Y+ +       +        V    
Sbjct: 956  RRLKADVFK-----NMPSKTELIVRVELSPMQKKYYKYILTRNFEALNARGGGNQV---- 1006

Query: 703  ADVLGLLLRLRQICCHTYL 721
              +L +++ L++ C H YL
Sbjct: 1007 -SLLNVVMDLKKCCNHPYL 1024


>gi|164419749 SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a1 isoform b [Homo sapiens]
          Length = 1042

 Score = 97.4 bits (241), Expect = 6e-20
 Identities = 69/256 (26%), Positives = 125/256 (48%), Gaps = 23/256 (8%)

Query: 475 PRTTLIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDR-----IREPALLSKQDIVLT 529
           P   +++ P S L NW+++F + + S   L    + G        IR+  +  + D+ +T
Sbjct: 232 PGPHMVLVPKSTLHNWMNEFKRWVPS---LRVICFVGDKDARAAFIRDEMMPGEWDVCVT 288

Query: 530 TYNILTHDYGTKGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLESERRWVLTGTPI 589
           +Y ++      K  S      W  +++DE H I+N  ++ ++ V + +S  R +LTGTP+
Sbjct: 289 SYEMVI-----KEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPL 343

Query: 590 QNSLKDLWSLLSFLKLKPFIDREWWHRTIQRPVTMGDEGGLRRLQSLIKNITLRRTKTSK 649
           QN+L +LW+LL+FL    F   + +         +GD+  + RL +++K   LRR KT  
Sbjct: 344 QNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIKTDV 403

Query: 650 IKGKPVLELPERKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHYADVLGLL 709
            K      LP +K    ++ LS  +R+ Y  +  +    +    + G +      +L +L
Sbjct: 404 EK-----SLPPKKEIKIYLGLSKMQREWYTKILMKDIDVLN---SSGKM--DKMRLLNIL 453

Query: 710 LRLRQICCHTYLLTNA 725
           ++LR+ C H YL   A
Sbjct: 454 MQLRKCCNHPYLFDGA 469



 Score = 92.4 bits (228), Expect = 2e-18
 Identities = 51/143 (35%), Positives = 83/143 (58%), Gaps = 3/143 (2%)

Query: 830 TSSSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQKK 889
           ++S K+  L   L  L+++   +  L+ SQ T  L ++E      G+ + RLDG    ++
Sbjct: 483 SNSGKMVVLDKLLAKLKEQGSRV--LIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEE 540

Query: 890 RVESIQCFQNTEAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHRL 949
           R E+I+ F N    S  I +LS +AGG+G+NL++A  V L D  WNP  + Q  DR HR+
Sbjct: 541 REEAIEAF-NAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRI 599

Query: 950 GQKQEVIITKFIVKDSVEENMLK 972
           GQK+ V + + I  ++VEE +++
Sbjct: 600 GQKKPVRVFRLITDNTVEERIVE 622



 Score = 35.8 bits (81), Expect = 0.21
 Identities = 32/104 (30%), Positives = 45/104 (43%), Gaps = 35/104 (33%)

Query: 211 KTEFDKLFEDLKEDDKTH------EMEPAEAIETPLLPHQKQALAWMVSRENSKELPPFW 264
           +TE ++  E L E  KT       E+ P+     PL  +Q + L W++S           
Sbjct: 148 RTEQEEDEELLSESRKTSNVCIRFEVSPSYVKGGPLRDYQIRGLNWLIS----------- 196

Query: 265 EQRNDLYYNTITNFSEKDRPENVHGGILADDMGLGKTLTAIAVI 308
                LY N +              GILAD+MGLGKTL  IA++
Sbjct: 197 -----LYENGVN-------------GILADEMGLGKTLQTIALL 222


>gi|21071044 SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a1 isoform a [Homo sapiens]
          Length = 1054

 Score = 97.4 bits (241), Expect = 6e-20
 Identities = 69/256 (26%), Positives = 125/256 (48%), Gaps = 23/256 (8%)

Query: 475 PRTTLIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDR-----IREPALLSKQDIVLT 529
           P   +++ P S L NW+++F + + S   L    + G        IR+  +  + D+ +T
Sbjct: 232 PGPHMVLVPKSTLHNWMNEFKRWVPS---LRVICFVGDKDARAAFIRDEMMPGEWDVCVT 288

Query: 530 TYNILTHDYGTKGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLESERRWVLTGTPI 589
           +Y ++      K  S      W  +++DE H I+N  ++ ++ V + +S  R +LTGTP+
Sbjct: 289 SYEMVI-----KEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPL 343

Query: 590 QNSLKDLWSLLSFLKLKPFIDREWWHRTIQRPVTMGDEGGLRRLQSLIKNITLRRTKTSK 649
           QN+L +LW+LL+FL    F   + +         +GD+  + RL +++K   LRR KT  
Sbjct: 344 QNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIKTDV 403

Query: 650 IKGKPVLELPERKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHYADVLGLL 709
            K      LP +K    ++ LS  +R+ Y  +  +    +    + G +      +L +L
Sbjct: 404 EK-----SLPPKKEIKIYLGLSKMQREWYTKILMKDIDVLN---SSGKM--DKMRLLNIL 453

Query: 710 LRLRQICCHTYLLTNA 725
           ++LR+ C H YL   A
Sbjct: 454 MQLRKCCNHPYLFDGA 469



 Score = 83.6 bits (205), Expect = 9e-16
 Identities = 51/155 (32%), Positives = 83/155 (53%), Gaps = 15/155 (9%)

Query: 830 TSSSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQKK 889
           ++S K+  L   L  L+++   +  L+ SQ T  L ++E      G+ + RLDG    ++
Sbjct: 483 SNSGKMVVLDKLLAKLKEQGSRV--LIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEE 540

Query: 890 RV------------ESIQCFQNTEAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPA 937
           R             E+I+ F N    S  I +LS +AGG+G+NL++A  V L D  WNP 
Sbjct: 541 REDKFLEVEFLGQREAIEAF-NAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQ 599

Query: 938 AEDQCFDRCHRLGQKQEVIITKFIVKDSVEENMLK 972
            + Q  DR HR+GQK+ V + + I  ++VEE +++
Sbjct: 600 VDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVE 634



 Score = 35.8 bits (81), Expect = 0.21
 Identities = 32/104 (30%), Positives = 45/104 (43%), Gaps = 35/104 (33%)

Query: 211 KTEFDKLFEDLKEDDKTH------EMEPAEAIETPLLPHQKQALAWMVSRENSKELPPFW 264
           +TE ++  E L E  KT       E+ P+     PL  +Q + L W++S           
Sbjct: 148 RTEQEEDEELLSESRKTSNVCIRFEVSPSYVKGGPLRDYQIRGLNWLIS----------- 196

Query: 265 EQRNDLYYNTITNFSEKDRPENVHGGILADDMGLGKTLTAIAVI 308
                LY N +              GILAD+MGLGKTL  IA++
Sbjct: 197 -----LYENGVN-------------GILADEMGLGKTLQTIALL 222


>gi|24308089 chromodomain helicase DNA binding protein 5 [Homo
            sapiens]
          Length = 1954

 Score = 97.4 bits (241), Expect = 6e-20
 Identities = 55/150 (36%), Positives = 83/150 (55%), Gaps = 3/150 (2%)

Query: 831  SSSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQKKR 890
            SS K+  L   L  LR +   +  L+ SQ T  L L+E  L+  G+ + R+DG +    R
Sbjct: 1022 SSGKLMLLQKMLKKLRDEGHRV--LIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLR 1079

Query: 891  VESIQCFQNTEAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHRLG 950
             E+I  F N         LLS +AGG+G+NL+ A  V + D  WNP  + Q F R HR+G
Sbjct: 1080 QEAIDRF-NAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIG 1138

Query: 951  QKQEVIITKFIVKDSVEENMLKIQNKKREL 980
            Q ++V+I +F+ + SVEE + ++  +K  L
Sbjct: 1139 QNKKVMIYRFVTRASVEERITQVAKRKMML 1168



 Score = 74.7 bits (182), Expect = 4e-13
 Identities = 50/199 (25%), Positives = 101/199 (50%), Gaps = 18/199 (9%)

Query: 523 KQDIVLTTYNILTHDYGTKGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLESERRW 582
           K  ++LT+Y ++T D    G     SI W  +++DE H ++N  ++  + +   + + + 
Sbjct: 818 KFHVLLTSYELITIDQAILG-----SIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKL 872

Query: 583 VLTGTPIQNSLKDLWSLLSFLKLKPFIDREWWHRTIQRPVTMGDEGGLRRLQSLIKNITL 642
           +LTGTP+QN+L++L+ LL+FL  + F + E +   ++    +  E  +++L  L+    L
Sbjct: 873 LLTGTPLQNNLEELFHLLNFLTPERFNNLEGF---LEEFADISKEDQIKKLHDLLGPHML 929

Query: 643 RRTKTSKIKGKPVLELPERKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHY 702
           RR K    K      +P +   I  + LS  ++K Y+ +       +    ++G    + 
Sbjct: 930 RRLKADVFK-----NMPAKTELIVRVELSQMQKKYYKFILTRNFEALN---SKGG--GNQ 979

Query: 703 ADVLGLLLRLRQICCHTYL 721
             +L +++ L++ C H YL
Sbjct: 980 VSLLNIMMDLKKCCNHPYL 998



 Score = 32.0 bits (71), Expect = 3.0
 Identities = 46/234 (19%), Positives = 96/234 (41%), Gaps = 21/234 (8%)

Query: 205  MTTEQLKTEFDKLFEDLKEDDKTHEMEPAEAIETPLLPHQKQALAWMVSRENSKE--LPP 262
            MT ++L        E+L +DD    M   +   TP+   Q      + +    K    PP
Sbjct: 1184 MTKQELDDILKFGTEELFKDDVEGMMSQGQRPVTPIPDVQSSKGGNLAASAKKKHGSTPP 1243

Query: 263  F----WEQRNDLYYNTITNFSEKDRPENVHGGILADDMGLGKTLTAIAVILTNFHDGRPL 318
                  E  + ++Y+        DR ++        +M    +   +A  +    DG   
Sbjct: 1244 GDNKDVEDSSVIHYDDAAISKLLDRNQDATDDTELQNMNEYLSSFKVAQYVVREEDG--- 1300

Query: 319  PIERVKKNLLKKEYNVNDDSM-KLGGNNTSEKADGLSKD---ASRCSEQPSISDIKEKSK 374
             +E V++ ++K+E NV+ D   KL  ++  ++ + L+++     R  +Q + +D  ++ +
Sbjct: 1301 -VEEVEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRIRKQVNYNDASQEDQ 1359

Query: 375  FRMSELSSSRPKRRKTAVQYIESSDSEEIETSELPQKMKGKLKNVQSETKGRAK 428
                ELS ++        +Y   S+ E+ +  E P+   G+ ++ +     R K
Sbjct: 1360 EWQDELSDNQS-------EYSIGSEDEDEDFEERPEGQSGRRQSRRQLKSDRDK 1406


>gi|52630326 chromodomain helicase DNA binding protein 3 isoform 1
            [Homo sapiens]
          Length = 2000

 Score = 96.3 bits (238), Expect = 1e-19
 Identities = 54/150 (36%), Positives = 82/150 (54%), Gaps = 3/150 (2%)

Query: 831  SSSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQKKR 890
            SS K+  L   L  L+++   +  L+ SQ T  L L+E  L   G+ + R+DG +    R
Sbjct: 1058 SSGKLMLLQKMLRKLKEQGHRV--LIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALR 1115

Query: 891  VESIQCFQNTEAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHRLG 950
             E+I  F N         LLS +AGG+G+NL+ A  V + D  WNP  + Q F R HR+G
Sbjct: 1116 QEAIDRF-NAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIG 1174

Query: 951  QKQEVIITKFIVKDSVEENMLKIQNKKREL 980
            Q  +V+I +F+ + SVEE + ++  +K  L
Sbjct: 1175 QANKVMIYRFVTRASVEERITQVAKRKMML 1204



 Score = 79.0 bits (193), Expect = 2e-14
 Identities = 61/238 (25%), Positives = 114/238 (47%), Gaps = 29/238 (12%)

Query: 523  KQDIVLTTYNILTHDYGTKGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLESERRW 582
            K  ++LT+Y ++T D    G     SIRW  +++DE H ++N  ++  + +   + + + 
Sbjct: 854  KFHVLLTSYELITIDQAALG-----SIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKL 908

Query: 583  VLTGTPIQNSLKDLWSLLSFLKLKPFIDREWWHRTIQRPVTMGDEGGLRRLQSLIKNITL 642
            +LTGTP+QN+L++L+ LL+FL  + F + E +   ++    +  E  +++L  L+    L
Sbjct: 909  LLTGTPLQNNLEELFHLLNFLTPERFNNLEGF---LEEFADISKEDQIKKLHDLLGPHML 965

Query: 643  RRTKTSKIKGKPVLELPERKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHY 702
            RR K    K      +P +   I  + LS  ++K Y+ +       +        V    
Sbjct: 966  RRLKADVFK-----NMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQV---- 1016

Query: 703  ADVLGLLLRLRQICCHTYLLTNAV--SSNGPSG---------NDTPEELRKKLIRKMK 749
              +L +++ L++ C H YL   A   S   PSG         +     L +K++RK+K
Sbjct: 1017 -SLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLK 1073


>gi|52630322 chromodomain helicase DNA binding protein 3 isoform 2
            [Homo sapiens]
          Length = 1966

 Score = 96.3 bits (238), Expect = 1e-19
 Identities = 54/150 (36%), Positives = 82/150 (54%), Gaps = 3/150 (2%)

Query: 831  SSSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQKKR 890
            SS K+  L   L  L+++   +  L+ SQ T  L L+E  L   G+ + R+DG +    R
Sbjct: 1058 SSGKLMLLQKMLRKLKEQGHRV--LIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALR 1115

Query: 891  VESIQCFQNTEAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHRLG 950
             E+I  F N         LLS +AGG+G+NL+ A  V + D  WNP  + Q F R HR+G
Sbjct: 1116 QEAIDRF-NAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIG 1174

Query: 951  QKQEVIITKFIVKDSVEENMLKIQNKKREL 980
            Q  +V+I +F+ + SVEE + ++  +K  L
Sbjct: 1175 QANKVMIYRFVTRASVEERITQVAKRKMML 1204



 Score = 79.0 bits (193), Expect = 2e-14
 Identities = 61/238 (25%), Positives = 114/238 (47%), Gaps = 29/238 (12%)

Query: 523  KQDIVLTTYNILTHDYGTKGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLESERRW 582
            K  ++LT+Y ++T D    G     SIRW  +++DE H ++N  ++  + +   + + + 
Sbjct: 854  KFHVLLTSYELITIDQAALG-----SIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKL 908

Query: 583  VLTGTPIQNSLKDLWSLLSFLKLKPFIDREWWHRTIQRPVTMGDEGGLRRLQSLIKNITL 642
            +LTGTP+QN+L++L+ LL+FL  + F + E +   ++    +  E  +++L  L+    L
Sbjct: 909  LLTGTPLQNNLEELFHLLNFLTPERFNNLEGF---LEEFADISKEDQIKKLHDLLGPHML 965

Query: 643  RRTKTSKIKGKPVLELPERKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHY 702
            RR K    K      +P +   I  + LS  ++K Y+ +       +        V    
Sbjct: 966  RRLKADVFK-----NMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQV---- 1016

Query: 703  ADVLGLLLRLRQICCHTYLLTNAV--SSNGPSG---------NDTPEELRKKLIRKMK 749
              +L +++ L++ C H YL   A   S   PSG         +     L +K++RK+K
Sbjct: 1017 -SLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLK 1073


>gi|158420731 chromodomain helicase DNA binding protein 3 isoform 3
            [Homo sapiens]
          Length = 2059

 Score = 96.3 bits (238), Expect = 1e-19
 Identities = 54/150 (36%), Positives = 82/150 (54%), Gaps = 3/150 (2%)

Query: 831  SSSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQKKR 890
            SS K+  L   L  L+++   +  L+ SQ T  L L+E  L   G+ + R+DG +    R
Sbjct: 1117 SSGKLMLLQKMLRKLKEQGHRV--LIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALR 1174

Query: 891  VESIQCFQNTEAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHRLG 950
             E+I  F N         LLS +AGG+G+NL+ A  V + D  WNP  + Q F R HR+G
Sbjct: 1175 QEAIDRF-NAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIG 1233

Query: 951  QKQEVIITKFIVKDSVEENMLKIQNKKREL 980
            Q  +V+I +F+ + SVEE + ++  +K  L
Sbjct: 1234 QANKVMIYRFVTRASVEERITQVAKRKMML 1263



 Score = 79.0 bits (193), Expect = 2e-14
 Identities = 61/238 (25%), Positives = 114/238 (47%), Gaps = 29/238 (12%)

Query: 523  KQDIVLTTYNILTHDYGTKGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLESERRW 582
            K  ++LT+Y ++T D    G     SIRW  +++DE H ++N  ++  + +   + + + 
Sbjct: 913  KFHVLLTSYELITIDQAALG-----SIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKL 967

Query: 583  VLTGTPIQNSLKDLWSLLSFLKLKPFIDREWWHRTIQRPVTMGDEGGLRRLQSLIKNITL 642
            +LTGTP+QN+L++L+ LL+FL  + F + E +   ++    +  E  +++L  L+    L
Sbjct: 968  LLTGTPLQNNLEELFHLLNFLTPERFNNLEGF---LEEFADISKEDQIKKLHDLLGPHML 1024

Query: 643  RRTKTSKIKGKPVLELPERKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHY 702
            RR K    K      +P +   I  + LS  ++K Y+ +       +        V    
Sbjct: 1025 RRLKADVFK-----NMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQV---- 1075

Query: 703  ADVLGLLLRLRQICCHTYLLTNAV--SSNGPSG---------NDTPEELRKKLIRKMK 749
              +L +++ L++ C H YL   A   S   PSG         +     L +K++RK+K
Sbjct: 1076 -SLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLK 1132


>gi|38708321 INO80 complex homolog 1 [Homo sapiens]
          Length = 1556

 Score = 96.3 bits (238), Expect = 1e-19
 Identities = 55/151 (36%), Positives = 83/151 (54%), Gaps = 4/151 (2%)

Query: 830  TSSSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQKK 889
            T S K+ AL   LT L+ +   +  L+ SQ T  + L+E  +      + RLDGS    +
Sbjct: 1098 TDSGKLYALDVLLTRLKSQGHRV--LIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISE 1155

Query: 890  RVESIQCFQNTEAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHRL 949
            R + +  FQN       + LLS +AGG+G+NL+AA  V   D  WNP  + Q  DR HRL
Sbjct: 1156 RRDMVADFQNRN--DIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRL 1213

Query: 950  GQKQEVIITKFIVKDSVEENMLKIQNKKREL 980
            GQ ++V + + I K ++EE +L+   +K E+
Sbjct: 1214 GQTKQVTVYRLICKGTIEERILQRAKEKSEI 1244



 Score = 86.3 bits (212), Expect = 1e-16
 Identities = 68/264 (25%), Positives = 124/264 (46%), Gaps = 34/264 (12%)

Query: 479 LIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRIRE-------PALLSKQD----IV 527
           LII P S L+NW  +F + +          Y+G    R+          L  QD    +V
Sbjct: 571 LIISPASTLNNWHQEFTRFVPK---FKVLPYWGNPHDRKVIRRFWSQKTLYTQDAPFHVV 627

Query: 528 LTTYNILTHDYGTKGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLESERRWVLTGT 587
           +T+Y ++  D           ++W  ++LDE  A+++ ++ + K +L  +   R +LTGT
Sbjct: 628 ITSYQLVVQDV-----KYFQRVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGT 682

Query: 588 PIQNSLKDLWSLLSFLKLKPFID----REWWHRTIQRPV---TMGDEGGLRRLQSLIKNI 640
           PIQN++ +LW+LL F+    F       EW+ + I+      +  DE  L RL  ++K  
Sbjct: 683 PIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHAENKSAIDENQLSRLHMILKPF 742

Query: 641 TLRRTKTSKIKGKPVLELPERKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLA 700
            LRR     IK     EL ++   + +  L+  ++ +YQ++KN+         + G+   
Sbjct: 743 MLRR-----IKKDVENELSDKIEILMYCQLTSRQKLLYQALKNKISIEDLLQSSMGSTQQ 797

Query: 701 HY---ADVLGLLLRLRQICCHTYL 721
                + ++ L+++ R++C H  L
Sbjct: 798 AQNTTSSLMNLVMQFRKVCNHPEL 821



 Score = 31.2 bits (69), Expect = 5.1
 Identities = 13/19 (68%), Positives = 18/19 (94%)

Query: 290 GILADDMGLGKTLTAIAVI 308
           GILAD+MGLGKT+ +IA++
Sbjct: 539 GILADEMGLGKTVQSIALL 557


>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
          Length = 3230

 Score = 96.3 bits (238), Expect = 1e-19
 Identities = 71/258 (27%), Positives = 119/258 (46%), Gaps = 37/258 (14%)

Query: 479 LIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRIREPALLSKQD--------IVLTT 530
           LII P SV+ NW  +  +   S        YYG  + R+   L +Q         + +T+
Sbjct: 671 LIIVPTSVMLNWEMELKRWCPS---FKILTYYGAQKERK---LKRQGWTKPNAFHVCITS 724

Query: 531 YNILTHDYGTKGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLESERRWVLTGTPIQ 590
           Y ++  D+            W  +ILDE   I+N  +Q+ +++L+  S+RR +LTGTP+Q
Sbjct: 725 YKLVLQDH-----QAFRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQ 779

Query: 591 NSLKDLWSLLSFLKLKPFIDREWWHRTIQRPVT-------MGDEGGLRRLQSLIKNITLR 643
           NSL +LWSL+ FL    F     +      P+T         +EG ++RL  +++   LR
Sbjct: 780 NSLMELWSLMHFLMPHVFQSHREFKEWFSNPLTGMIEGSQEYNEGLVKRLHKVLRPFLLR 839

Query: 644 RTKTSKIKGKPVLELPERKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHYA 703
           R K    K     ++P++   +    LS  +R +Y     +          E     H+ 
Sbjct: 840 RVKVDVEK-----QMPKKYEHVIRCRLSKRQRCLYDDFMAQTTT------KETLATGHFM 888

Query: 704 DVLGLLLRLRQICCHTYL 721
            V+ +L++LR++C H  L
Sbjct: 889 SVINILMQLRKVCNHPNL 906



 Score = 90.5 bits (223), Expect = 7e-18
 Identities = 61/172 (35%), Positives = 86/172 (50%), Gaps = 8/172 (4%)

Query: 834  KINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQKKRVES 893
            K+  L   L  L+ +   +  L+ +Q T  L ++E  L   G ++ RLDGS     RVE 
Sbjct: 2044 KLQTLAVLLRQLKAEGHRV--LIFTQMTRMLDVLEQFLTYHGHLYLRLDGST----RVEQ 2097

Query: 894  IQCFQNTEAGSPTIM--LLSLKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHRLGQ 951
             Q           I   +LS ++GGVG+NL+ A  V   D  WNP  + Q  DRCHR+GQ
Sbjct: 2098 RQALMERFNADKRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQ 2157

Query: 952  KQEVIITKFIVKDSVEENMLKIQNKKRELAAGAFGTKKPNADEMKQAKINEI 1003
             ++V I + I + +VEEN+LK  N+KR L   A           KQ  I E+
Sbjct: 2158 TRDVHIYRLISERTVEENILKKANQKRMLGDMAIEGGNFTTAYFKQQTIREL 2209


>gi|48255900 SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin a2 isoform a [Homo sapiens]
          Length = 1590

 Score = 95.9 bits (237), Expect = 2e-19
 Identities = 75/262 (28%), Positives = 127/262 (48%), Gaps = 22/262 (8%)

Query: 479  LIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRIREPALLS-KQDIVLTTYNILTHD 537
            LII PLS LSNW  +F +   S V +++       R   P L S K +++LTTY     +
Sbjct: 777  LIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTY-----E 831

Query: 538  YGTKGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAV-LDLESERRWVLTGTPIQNSLKDL 596
            Y  K    L  IRW  +I+DEGH ++N + + T+ +     + RR +LTGTP+QN L +L
Sbjct: 832  YIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPEL 891

Query: 597  WSLLSFLKLKPFIDREWWHRTIQRPVTMGDEGG----------LRRLQSLIKNITLRRTK 646
            W+LL+FL    F     + +    P  M  E            +RRL  +++   LRR  
Sbjct: 892  WALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRR-- 949

Query: 647  TSKIKGKPVLELPERKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHYADVL 706
               +K +   +LPE+  ++    +S  ++ +Y+ ++ +G         +         ++
Sbjct: 950  ---LKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLM 1006

Query: 707  GLLLRLRQICCHTYLLTNAVSS 728
              +++LR+IC H Y+  +   S
Sbjct: 1007 NTIMQLRKICNHPYMFQHIEES 1028



 Score = 88.6 bits (218), Expect = 3e-17
 Identities = 56/165 (33%), Positives = 85/165 (51%), Gaps = 8/165 (4%)

Query: 829  WTSSSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQK 888
            + +S K   L   L  LR  N  +  L+  Q T+ ++++E       F++ RLDG+   +
Sbjct: 1046 YRASGKFELLDRILPKLRATNHRV--LLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSE 1103

Query: 889  KRVESIQCFQNTEAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHR 948
             R   ++ F N       I LLS +AGG+GLNL AA  V + D  WNP  + Q  DR HR
Sbjct: 1104 DRAALLKKF-NEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHR 1162

Query: 949  LGQKQEVIITKFIVKDSVEENML-----KIQNKKRELAAGAFGTK 988
            +GQ+ EV + +    +SVEE +L     K+   ++ + AG F  K
Sbjct: 1163 IGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQK 1207



 Score = 35.4 bits (80), Expect = 0.27
 Identities = 28/80 (35%), Positives = 34/80 (42%), Gaps = 29/80 (36%)

Query: 229 EMEPAEAIETPLLPHQKQALAWMVSRENSKELPPFWEQRNDLYYNTITNFSEKDRPENVH 288
           E + A  I   L  +Q Q L WMVS                LY N +             
Sbjct: 713 EKQSALLINGTLKHYQLQGLEWMVS----------------LYNNNLN------------ 744

Query: 289 GGILADDMGLGKTLTAIAVI 308
            GILAD+MGLGKT+  IA+I
Sbjct: 745 -GILADEMGLGKTIQTIALI 763



 Score = 30.8 bits (68), Expect = 6.7
 Identities = 41/191 (21%), Positives = 76/191 (39%), Gaps = 32/191 (16%)

Query: 261  PPFWEQRNDLYYNTITNFSEKDRPENVHGGILADDMG--LGKTLTAIAVILTNFHD---- 314
            PP   ++ +   +T+ N+ ++   E V      +  G   G+ L+ + + L +  +    
Sbjct: 1380 PPKLTKQMNAIIDTVINYKDRCNVEKVPSNSQLEIEGNSSGRQLSEVFIQLPSRKELPEY 1439

Query: 315  ----GRPLPIERVKKNLLKKEY----NVNDDSMKLGGNNTSEKADGLSKDASRCSEQPSI 366
                 +P+  +++K+ +   +Y    ++  D M L  N  +   +G              
Sbjct: 1440 YELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNAQTFNLEG-------------- 1485

Query: 367  SDIKEKSKFRMSELSSSRPKRRKTAVQYIESSDSEEIETSELPQK----MKGKLKNVQSE 422
            S I E S    S   S+R K  K      ES++ EE E  E  +     +K K+K  + +
Sbjct: 1486 SQIYEDSIVLQSVFKSARQKIAKEEESEDESNEEEEEEDEEESESEAKSVKVKIKLNKKD 1545

Query: 423  TKGRAKAGSSK 433
             KGR K    K
Sbjct: 1546 DKGRDKGKGKK 1556


>gi|48255898 SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin a2 isoform b [Homo sapiens]
          Length = 1572

 Score = 95.9 bits (237), Expect = 2e-19
 Identities = 75/262 (28%), Positives = 127/262 (48%), Gaps = 22/262 (8%)

Query: 479  LIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRIREPALLS-KQDIVLTTYNILTHD 537
            LII PLS LSNW  +F +   S V +++       R   P L S K +++LTTY     +
Sbjct: 777  LIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTY-----E 831

Query: 538  YGTKGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAV-LDLESERRWVLTGTPIQNSLKDL 596
            Y  K    L  IRW  +I+DEGH ++N + + T+ +     + RR +LTGTP+QN L +L
Sbjct: 832  YIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPEL 891

Query: 597  WSLLSFLKLKPFIDREWWHRTIQRPVTMGDEGG----------LRRLQSLIKNITLRRTK 646
            W+LL+FL    F     + +    P  M  E            +RRL  +++   LRR  
Sbjct: 892  WALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRR-- 949

Query: 647  TSKIKGKPVLELPERKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHYADVL 706
               +K +   +LPE+  ++    +S  ++ +Y+ ++ +G         +         ++
Sbjct: 950  ---LKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLM 1006

Query: 707  GLLLRLRQICCHTYLLTNAVSS 728
              +++LR+IC H Y+  +   S
Sbjct: 1007 NTIMQLRKICNHPYMFQHIEES 1028



 Score = 88.6 bits (218), Expect = 3e-17
 Identities = 56/165 (33%), Positives = 85/165 (51%), Gaps = 8/165 (4%)

Query: 829  WTSSSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQK 888
            + +S K   L   L  LR  N  +  L+  Q T+ ++++E       F++ RLDG+   +
Sbjct: 1046 YRASGKFELLDRILPKLRATNHRV--LLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSE 1103

Query: 889  KRVESIQCFQNTEAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHR 948
             R   ++ F N       I LLS +AGG+GLNL AA  V + D  WNP  + Q  DR HR
Sbjct: 1104 DRAALLKKF-NEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHR 1162

Query: 949  LGQKQEVIITKFIVKDSVEENML-----KIQNKKRELAAGAFGTK 988
            +GQ+ EV + +    +SVEE +L     K+   ++ + AG F  K
Sbjct: 1163 IGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQK 1207



 Score = 35.4 bits (80), Expect = 0.27
 Identities = 28/80 (35%), Positives = 34/80 (42%), Gaps = 29/80 (36%)

Query: 229 EMEPAEAIETPLLPHQKQALAWMVSRENSKELPPFWEQRNDLYYNTITNFSEKDRPENVH 288
           E + A  I   L  +Q Q L WMVS                LY N +             
Sbjct: 713 EKQSALLINGTLKHYQLQGLEWMVS----------------LYNNNLN------------ 744

Query: 289 GGILADDMGLGKTLTAIAVI 308
            GILAD+MGLGKT+  IA+I
Sbjct: 745 -GILADEMGLGKTIQTIALI 763


>gi|6912622 RAD54 homolog B [Homo sapiens]
          Length = 910

 Score = 94.0 bits (232), Expect = 6e-19
 Identities = 60/178 (33%), Positives = 89/178 (50%), Gaps = 3/178 (1%)

Query: 832  SSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQKKRV 891
            S K+  L   L  + +  P  K ++VS +T  L++++   K  G+ +TRLDG     +R 
Sbjct: 641  SGKLQVLSKLLAVIHELRPTEKVVLVSNYTQTLNILQEVCKRHGYAYTRLDGQTPISQRQ 700

Query: 892  ESIQCFQNTEAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAEDQCFDRCHRLGQ 951
            + +  F N++  S  I LLS KAGGVGLNL   S + L D  WNPA + Q   R  R GQ
Sbjct: 701  QIVDGF-NSQHSSFFIFLLSSKAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDGQ 759

Query: 952  KQEVIITKFIVKDSVEENMLKIQNKKRELAAGAFGTKKPNADEMKQAKINEIRTLIDL 1009
            K  V I + +   ++EE + + Q  K+ L        K    E  Q  + E++ L  L
Sbjct: 760  KYPVHIYRLLTTGTIEEKIYQRQISKQGLCGAVVDLTK--TSEHIQFSVEELKNLFTL 815



 Score = 67.8 bits (164), Expect = 5e-11
 Identities = 65/263 (24%), Positives = 124/263 (47%), Gaps = 28/263 (10%)

Query: 476 RTTLIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRIREPALLSKQDIVLTTYNILT 535
           + TLI+ P S+++NW  +F + + S+  +  +      ++ E        +++ +Y +L 
Sbjct: 356 KKTLIVTPGSLVNNWKKEFQKWLGSE-RIKIFTVDQDHKVEEFIKSIFYSVLIISYEMLL 414

Query: 536 HDYGTKGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLESERRWVLTGTPIQNSLKD 595
                     + +I++  +I DEGH ++N   + T A++ L  E+R +LTGTPIQN L++
Sbjct: 415 RSL-----DQIKNIKFDLLICDEGHRLKNSAIKTTTALISLSCEKRIILTGTPIQNDLQE 469

Query: 596 LWSLLSFLKLKPFIDREWWHRTIQRPVTMGDEG---------GLRR---LQSLIKNITLR 643
            ++L+ F+          + +  + P+ +  E          G RR   L  L     LR
Sbjct: 470 FFALIDFVNPGILGSLSSYRKIYEEPIILSREPSASEEEKELGERRAAELTCLTGLFILR 529

Query: 644 RTKTSKIKGKPVLELPERKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHYA 703
           RT+  +I  K +    E  VF +   L  E   +Y+ + N   + + R+  +G  L   +
Sbjct: 530 RTQ--EIINKYLPPKIENVVFCRPGALQIE---LYRKLLN---SQVVRFCLQG--LLENS 579

Query: 704 DVLGLLLRLRQICCHTYLLTNAV 726
             L  +  L+++C H  LL N++
Sbjct: 580 PHLICIGALKKLCNHPCLLFNSI 602



 Score = 33.5 bits (75), Expect = 1.0
 Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 8/44 (18%)

Query: 289 GGILADDMGLGKTLTAIAVILT----NFHDGRPLPIERVKKNLL 328
           G ILAD+MGLGKTL  I++I T      + G+P+    +KK L+
Sbjct: 321 GAILADEMGLGKTLQCISLIWTLQCQGPYGGKPV----IKKTLI 360


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.133    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,528,385
Number of Sequences: 37866
Number of extensions: 1768570
Number of successful extensions: 5899
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 174
Number of HSP's that attempted gapping in prelim test: 5302
Number of HSP's gapped (non-prelim): 624
length of query: 1009
length of database: 18,247,518
effective HSP length: 112
effective length of query: 897
effective length of database: 14,006,526
effective search space: 12563853822
effective search space used: 12563853822
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 67 (30.4 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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