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Search of human proteins with 21040251
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|21040251 actin-binding Rho activating protein [Homo sapiens]
(381 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|21040251 actin-binding Rho activating protein [Homo sapiens] 786 0.0
gi|24308273 hypothetical protein LOC58527 [Homo sapiens] 43 4e-04
gi|55742678 glucocorticoid induced transcript 1 [Homo sapiens] 41 0.002
gi|118421089 chromodomain helicase DNA binding protein 2 isoform... 41 0.002
gi|110611184 chromodomain helicase DNA binding protein 2 isoform... 41 0.002
gi|47578107 delangin isoform B [Homo sapiens] 34 0.19
gi|47578105 delangin isoform A [Homo sapiens] 34 0.19
gi|13899299 sestrin 2 [Homo sapiens] 34 0.19
gi|90819229 cutaneous T-cell lymphoma-associated antigen 1 isofo... 34 0.25
gi|116235474 LKB1 interacting protein [Homo sapiens] 34 0.25
gi|23397672 homeobox D4 [Homo sapiens] 33 0.33
gi|193290160 CTAGE family, member 4 [Homo sapiens] 33 0.43
gi|224586773 hypothetical protein LOC643854 [Homo sapiens] 33 0.43
gi|31652242 transcription factor 20 isoform 2 [Homo sapiens] 33 0.43
gi|31652244 transcription factor 20 isoform 1 [Homo sapiens] 33 0.43
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 33 0.43
gi|118498359 ribosomal L1 domain containing 1 [Homo sapiens] 33 0.56
gi|126116581 retina and anterior neural fold homeobox [Homo sapi... 32 0.73
gi|13540521 basic helix-loop-helix domain containing, class B, 3... 32 0.73
gi|7662354 MON1 homolog B [Homo sapiens] 32 0.73
gi|239756584 PREDICTED: hypothetical protein [Homo sapiens] 32 0.95
gi|239751076 PREDICTED: hypothetical protein [Homo sapiens] 32 0.95
gi|239745563 PREDICTED: hypothetical protein [Homo sapiens] 32 0.95
gi|38787970 tensin like C1 domain containing phosphatase isoform... 32 0.95
gi|38787957 tensin like C1 domain containing phosphatase isoform... 32 0.95
gi|38787941 tensin like C1 domain containing phosphatase isoform... 32 0.95
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 32 0.95
gi|33620716 retinoblastoma-binding protein 6 isoform 2 [Homo sap... 32 0.95
gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo sap... 32 0.95
gi|149274646 hypothetical protein LOC57710 [Homo sapiens] 32 0.95
>gi|21040251 actin-binding Rho activating protein [Homo sapiens]
Length = 381
Score = 786 bits (2029), Expect = 0.0
Identities = 381/381 (100%), Positives = 381/381 (100%)
Query: 1 MAPGEKESGEGPAKSALRKIRTATLVISLARGWQQWANENSIRQAQEPTGWLPGGTQDSP 60
MAPGEKESGEGPAKSALRKIRTATLVISLARGWQQWANENSIRQAQEPTGWLPGGTQDSP
Sbjct: 1 MAPGEKESGEGPAKSALRKIRTATLVISLARGWQQWANENSIRQAQEPTGWLPGGTQDSP 60
Query: 61 QAPKPITPPTSHQKAQSAPKSPPRLPEGHGDGQSSEKAPEVSHIKKKEVSKTVVSKTYER 120
QAPKPITPPTSHQKAQSAPKSPPRLPEGHGDGQSSEKAPEVSHIKKKEVSKTVVSKTYER
Sbjct: 61 QAPKPITPPTSHQKAQSAPKSPPRLPEGHGDGQSSEKAPEVSHIKKKEVSKTVVSKTYER 120
Query: 121 GGDVSHLSHRYERDAGVLEPGQPENDIDRILHSHGSPTRRRKCANLVSELTKGWRVMEQE 180
GGDVSHLSHRYERDAGVLEPGQPENDIDRILHSHGSPTRRRKCANLVSELTKGWRVMEQE
Sbjct: 121 GGDVSHLSHRYERDAGVLEPGQPENDIDRILHSHGSPTRRRKCANLVSELTKGWRVMEQE 180
Query: 181 EPTWRSDSVDTEDSGYGGEAEERPEQDGVQVAVVRIKRPLPSQVNRFTEKLNCKAQQKYS 240
EPTWRSDSVDTEDSGYGGEAEERPEQDGVQVAVVRIKRPLPSQVNRFTEKLNCKAQQKYS
Sbjct: 181 EPTWRSDSVDTEDSGYGGEAEERPEQDGVQVAVVRIKRPLPSQVNRFTEKLNCKAQQKYS 240
Query: 241 PVGNLKGRWQQWADEHIQSQKLNPFSEEFDYELAMSTRLHKGDEGYGRPKEGTKTAERAK 300
PVGNLKGRWQQWADEHIQSQKLNPFSEEFDYELAMSTRLHKGDEGYGRPKEGTKTAERAK
Sbjct: 241 PVGNLKGRWQQWADEHIQSQKLNPFSEEFDYELAMSTRLHKGDEGYGRPKEGTKTAERAK 300
Query: 301 RAEEHIYREMMDMCFIICTMARHRRDGKIQVTFGDLFDRYVRISDKVVGILMRARKHGLV 360
RAEEHIYREMMDMCFIICTMARHRRDGKIQVTFGDLFDRYVRISDKVVGILMRARKHGLV
Sbjct: 301 RAEEHIYREMMDMCFIICTMARHRRDGKIQVTFGDLFDRYVRISDKVVGILMRARKHGLV 360
Query: 361 DFEGEMLWQGRDDHVVITLLK 381
DFEGEMLWQGRDDHVVITLLK
Sbjct: 361 DFEGEMLWQGRDDHVVITLLK 381
>gi|24308273 hypothetical protein LOC58527 [Homo sapiens]
Length = 81
Score = 43.1 bits (100), Expect = 4e-04
Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 326 DGKIQVTFGDLF--DRYVRISDKVVGILMRARKHGLVDFEGEMLWQGRDDHVVITLLK 381
DGK+ V FG LF D+ + + +VG L A++ +V + GE+L QG D V I LL+
Sbjct: 23 DGKLSVKFGVLFRDDKCANLFEALVGTLKAAKRRKIVTYPGELLLQGVHDDVDIILLQ 80
>gi|55742678 glucocorticoid induced transcript 1 [Homo sapiens]
Length = 547
Score = 41.2 bits (95), Expect = 0.002
Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 5/114 (4%)
Query: 9 GEGPAKSALRKIRT--ATLVISLARGWQQWANENSIRQAQEPTGWLPGGTQDSPQAPKPI 66
G PA A R ++ AT+ L RG Q + A G LPG +P
Sbjct: 50 GCAPAAGAGRLLQPIRATVPYQLLRGSQHSPTRPPVAAAAASLGSLPGPGAARGPSPSSP 109
Query: 67 TPPTSHQKAQSAPKS---PPRLPEGHGDGQSSEKAPEVSHIKKKEVSKTVVSKT 117
TPP + A+ AP++ P R PE H S E+ S + + + +K+ +T
Sbjct: 110 TPPAAAAPAEQAPRAKGRPRRSPESHRRSSSPERRSPGSPVCRADKAKSQQVRT 163
>gi|118421089 chromodomain helicase DNA binding protein 2 isoform 1
[Homo sapiens]
Length = 1828
Score = 41.2 bits (95), Expect = 0.002
Identities = 61/279 (21%), Positives = 102/279 (36%), Gaps = 47/279 (16%)
Query: 37 ANENSIRQAQEPTGWLPGGTQDSPQAPKPITPPTSHQKAQSAPKSPPRLPEGHGDGQSSE 96
+N +S ++E +G G +S Q P + S ++ S+ +S E + S+
Sbjct: 17 SNASSHSASEEASGSDSGSQSESEQGSDPGSGHGS--ESNSSSESSESQSESESESAGSK 74
Query: 97 KAPEVSHIKKKEVSKTVVSKTYERGGDVSHLSHRYERDAGVLEPGQPENDIDRIL----- 151
P + K+K SK ER DV + Y GV + + R
Sbjct: 75 SQPVLPEAKEKPASKK------ERIADVKKMWEEYPDVYGVRRSNRSRQEPSRFNIKEEA 128
Query: 152 ---HSHGSPTRRRKCANLVSELTKGWRVMEQEEPTWRSDSVDTEDSGYGGEAEERPEQDG 208
GSP RR G R ++++E + S D ++ G E+E PEQ
Sbjct: 129 SSGSESGSPKRR------------GQRQLKKQEKWKQEPSEDEQEQGTSAESE--PEQ-- 172
Query: 209 VQVAVVRIKRPLPSQVNRFTEKLNCKAQQKYSPVGNLKGRWQQWADEHIQSQKLN----- 263
V+ +RP+P R K K Q K K D+ ++ K
Sbjct: 173 ---KKVKARRPVP---RRTVPKPRVKKQPKTQRGKRKKQDSSDEDDDDDEAPKRQTRRRA 226
Query: 264 ----PFSEEFDYELAMSTRLHKGDEGYGRPKEGTKTAER 298
+ E+ D+E + EG ++ ++T E+
Sbjct: 227 AKNVSYKEDDDFETDSDDLIEMTGEGVDEQQDNSETIEK 265
>gi|110611184 chromodomain helicase DNA binding protein 2 isoform 2
[Homo sapiens]
Length = 501
Score = 41.2 bits (95), Expect = 0.002
Identities = 61/279 (21%), Positives = 102/279 (36%), Gaps = 47/279 (16%)
Query: 37 ANENSIRQAQEPTGWLPGGTQDSPQAPKPITPPTSHQKAQSAPKSPPRLPEGHGDGQSSE 96
+N +S ++E +G G +S Q P + S ++ S+ +S E + S+
Sbjct: 17 SNASSHSASEEASGSDSGSQSESEQGSDPGSGHGS--ESNSSSESSESQSESESESAGSK 74
Query: 97 KAPEVSHIKKKEVSKTVVSKTYERGGDVSHLSHRYERDAGVLEPGQPENDIDRIL----- 151
P + K+K SK ER DV + Y GV + + R
Sbjct: 75 SQPVLPEAKEKPASKK------ERIADVKKMWEEYPDVYGVRRSNRSRQEPSRFNIKEEA 128
Query: 152 ---HSHGSPTRRRKCANLVSELTKGWRVMEQEEPTWRSDSVDTEDSGYGGEAEERPEQDG 208
GSP RR G R ++++E + S D ++ G E+E PEQ
Sbjct: 129 SSGSESGSPKRR------------GQRQLKKQEKWKQEPSEDEQEQGTSAESE--PEQ-- 172
Query: 209 VQVAVVRIKRPLPSQVNRFTEKLNCKAQQKYSPVGNLKGRWQQWADEHIQSQKLN----- 263
V+ +RP+P R K K Q K K D+ ++ K
Sbjct: 173 ---KKVKARRPVP---RRTVPKPRVKKQPKTQRGKRKKQDSSDEDDDDDEAPKRQTRRRA 226
Query: 264 ----PFSEEFDYELAMSTRLHKGDEGYGRPKEGTKTAER 298
+ E+ D+E + EG ++ ++T E+
Sbjct: 227 AKNVSYKEDDDFETDSDDLIEMTGEGVDEQQDNSETIEK 265
>gi|47578107 delangin isoform B [Homo sapiens]
Length = 2697
Score = 34.3 bits (77), Expect = 0.19
Identities = 41/180 (22%), Positives = 69/180 (38%), Gaps = 27/180 (15%)
Query: 55 GTQDSPQAPKPITPPTSHQKAQSAPKSP-------PRLPEGHGDGQ------SSEKAPEV 101
G ++P+ P T QK +S P++P P P+ D + S+EK PEV
Sbjct: 720 GHPETPKQKGDGRPETPKQKGESRPETPKQKNEGRPETPKHRHDNRRDSGKPSTEKKPEV 779
Query: 102 SHIKKKEVS-----KTVVSKTYERGGDVSHLSHRYERDAGVLEPGQPENDIDRILHSHGS 156
S K+ S K+ ++ ++ D +S RD + + +R G
Sbjct: 780 SKHKQDTKSDSPRLKSERAEALKQRPDGRSVSESLRRDHDNKQKSDDRGESER---HRGD 836
Query: 157 PTRRRKCANLVSELTKGWRVMEQEEPT------WRSDSVDTEDSGYGGEAEERPEQDGVQ 210
+R R+ L S + T R +S D+ + GE + RP+ V+
Sbjct: 837 QSRVRRPETLRSSSRNEHGIKSDSSKTDKLERKHRHESGDSRERPSSGEQKSRPDSPRVK 896
Score = 32.3 bits (72), Expect = 0.73
Identities = 41/158 (25%), Positives = 65/158 (41%), Gaps = 20/158 (12%)
Query: 68 PPTSHQKAQSAPKSPPRLPEGHGD--GQSSEKAPEVSHIKKKEVSKTVVSKTYERGGDVS 125
P T QK +S P++P + +GH + Q + PE K + +T K R
Sbjct: 700 PETPKQKGESRPETPKQKSDGHPETPKQKGDGRPETPKQKGESRPETPKQKNEGRPETPK 759
Query: 126 HLSHRYERDAGVLEPG---QPENDIDRILHSHGSPTRRRKCANLVSELTKGWRVMEQEEP 182
H H RD+G +P +PE + SP + + A + + G V E
Sbjct: 760 H-RHDNRRDSG--KPSTEKKPEVSKHKQDTKSDSPRLKSERAEALKQRPDGRSVSE---- 812
Query: 183 TWRSDSVDTEDSGYGGEAE-ERPEQDGVQVAVVRIKRP 219
+ R D + + S GE+E R +Q R++RP
Sbjct: 813 SLRRDHDNKQKSDDRGESERHRGDQS-------RVRRP 843
>gi|47578105 delangin isoform A [Homo sapiens]
Length = 2804
Score = 34.3 bits (77), Expect = 0.19
Identities = 41/180 (22%), Positives = 69/180 (38%), Gaps = 27/180 (15%)
Query: 55 GTQDSPQAPKPITPPTSHQKAQSAPKSP-------PRLPEGHGDGQ------SSEKAPEV 101
G ++P+ P T QK +S P++P P P+ D + S+EK PEV
Sbjct: 720 GHPETPKQKGDGRPETPKQKGESRPETPKQKNEGRPETPKHRHDNRRDSGKPSTEKKPEV 779
Query: 102 SHIKKKEVS-----KTVVSKTYERGGDVSHLSHRYERDAGVLEPGQPENDIDRILHSHGS 156
S K+ S K+ ++ ++ D +S RD + + +R G
Sbjct: 780 SKHKQDTKSDSPRLKSERAEALKQRPDGRSVSESLRRDHDNKQKSDDRGESER---HRGD 836
Query: 157 PTRRRKCANLVSELTKGWRVMEQEEPT------WRSDSVDTEDSGYGGEAEERPEQDGVQ 210
+R R+ L S + T R +S D+ + GE + RP+ V+
Sbjct: 837 QSRVRRPETLRSSSRNEHGIKSDSSKTDKLERKHRHESGDSRERPSSGEQKSRPDSPRVK 896
Score = 32.3 bits (72), Expect = 0.73
Identities = 41/158 (25%), Positives = 65/158 (41%), Gaps = 20/158 (12%)
Query: 68 PPTSHQKAQSAPKSPPRLPEGHGD--GQSSEKAPEVSHIKKKEVSKTVVSKTYERGGDVS 125
P T QK +S P++P + +GH + Q + PE K + +T K R
Sbjct: 700 PETPKQKGESRPETPKQKSDGHPETPKQKGDGRPETPKQKGESRPETPKQKNEGRPETPK 759
Query: 126 HLSHRYERDAGVLEPG---QPENDIDRILHSHGSPTRRRKCANLVSELTKGWRVMEQEEP 182
H H RD+G +P +PE + SP + + A + + G V E
Sbjct: 760 H-RHDNRRDSG--KPSTEKKPEVSKHKQDTKSDSPRLKSERAEALKQRPDGRSVSE---- 812
Query: 183 TWRSDSVDTEDSGYGGEAE-ERPEQDGVQVAVVRIKRP 219
+ R D + + S GE+E R +Q R++RP
Sbjct: 813 SLRRDHDNKQKSDDRGESERHRGDQS-------RVRRP 843
>gi|13899299 sestrin 2 [Homo sapiens]
Length = 480
Score = 34.3 bits (77), Expect = 0.19
Identities = 40/151 (26%), Positives = 61/151 (40%), Gaps = 20/151 (13%)
Query: 50 GWLPGGTQDSPQAPKPITPPTSHQKAQSAPKSPPRLPEGHGDGQSSEKAPEVSHIKKKEV 109
G LP G D AP+ TPP+ QS+P P R P + G S + E + +++
Sbjct: 215 GILPEGDADGSPAPQAPTPPSE----QSSP--PSRDPLNNSGGFESARDVEALMERMQQL 268
Query: 110 SKTVVSKTYERGGDVSHLSHRYERDAGVLEPGQPENDIDRILHSHGSPTRRRKCANLVSE 169
++++ + G + R+E + P DI SP C V +
Sbjct: 269 QESLLR---DEGTSQEEMESRFELEKSESLLVTPSADI-----LEPSPHPDMLC--FVED 318
Query: 170 LTKGW----RVMEQEEPTWRSDSVDTEDSGY 196
T G+ R Q PT+R+ ED GY
Sbjct: 319 PTFGYEDFTRRGAQAPPTFRAQDYTWEDHGY 349
>gi|90819229 cutaneous T-cell lymphoma-associated antigen 1 isoform
1 [Homo sapiens]
Length = 745
Score = 33.9 bits (76), Expect = 0.25
Identities = 31/122 (25%), Positives = 46/122 (37%), Gaps = 10/122 (8%)
Query: 55 GTQDSPQAPKPITPPTSHQKAQSAP--------KSPPRLPEGHGDGQSSEKAPEVSHIKK 106
G Q SP P P+ P+S +A P + P LP G G G P I K
Sbjct: 482 GRQHSPYGPSPLGWPSSETRASLYPPTLLEGPLRLSPLLPRGGGRGSRGPGNPPDHQITK 541
Query: 107 K--EVSKTVVSKTYERGGDVSHLSHRYERDAGVLEPGQPENDIDRILHSHGSPTRRRKCA 164
+ E S ++ + D L+ +E+D ++ P ++ D L CA
Sbjct: 542 ERGESSCDRLTDPHRAPSDAGPLAPPWEQDYRMMFPPPGQSYPDSALPPQRQDRFYSNCA 601
Query: 165 NL 166
L
Sbjct: 602 RL 603
>gi|116235474 LKB1 interacting protein [Homo sapiens]
Length = 1099
Score = 33.9 bits (76), Expect = 0.25
Identities = 32/117 (27%), Positives = 48/117 (41%), Gaps = 16/117 (13%)
Query: 31 RGWQQWANENSIRQAQEPTGW-LPGGTQDSPQAPKPITPPTSHQKAQSAPKSPPRLPEGH 89
R W Q+ R EP+G LP +P P PP S Q +AP+ P E
Sbjct: 439 RNWLQY------RSHLEPSGNPLPA----TPTTSAPSAPPASSQGPDTAPRPSPPQEEAR 488
Query: 90 GDGQSSEKAPEVSHIKKKEVSKTVVSKTYERGGDVSHLSHRYERDAGVLEPGQPEND 146
G +S +K E + +E + K + G+ + + E +AG E + E D
Sbjct: 489 GPQESPQKMSEEVRAEPQEEEEEKEGKEEKEEGE---MVEQGEEEAG--EEEEEEQD 540
>gi|23397672 homeobox D4 [Homo sapiens]
Length = 255
Score = 33.5 bits (75), Expect = 0.33
Identities = 34/122 (27%), Positives = 49/122 (40%), Gaps = 22/122 (18%)
Query: 46 QEPTG-----WLPGGTQDSPQAPKPITPPTSHQKAQSAPKSPPRLPEGHGDGQSSEKAPE 100
QEP G PG +P AP P P + +QS PK PP ++ K P
Sbjct: 80 QEPGGPGGHYAAPGEPCPAPPAPPPAPLPGARAYSQSDPKQPP--------SGTALKQPA 131
Query: 101 VSHIKKKEVSKTVVSKTYERGGDVSHLSHRYERDAGVLEPGQPENDIDRILHSHGSPTRR 160
V + K+V V+ Y GG+ Y R Q ++++ H + TRR
Sbjct: 132 VVYPWMKKVHVNSVNPNY-TGGEPKRSRTAYTR--------QQVLELEKEFHFNRYLTRR 182
Query: 161 RK 162
R+
Sbjct: 183 RR 184
>gi|193290160 CTAGE family, member 4 [Homo sapiens]
Length = 777
Score = 33.1 bits (74), Expect = 0.43
Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 12/104 (11%)
Query: 55 GTQDSPQAPKPITPPTSHQKAQSAPKS--------PPRLPEGHGDGQSSEKAPEVSHI-- 104
G + SP +P P+ P+S +A +P++ P LP G G G SS P I
Sbjct: 515 GREHSPCSPSPLGRPSSETRAFPSPQTLLEDPLRLSPVLPGGGGRGPSSPGNPLDHQITN 574
Query: 105 KKKEVSKTVVSKTYERGGDVSHLSHRYERDAGVL--EPGQPEND 146
++ E S + + D LS E+D ++ PGQ D
Sbjct: 575 ERGEPSYDRLIDPHRAPSDTGSLSSPVEQDRRMMFPPPGQSYPD 618
>gi|224586773 hypothetical protein LOC643854 [Homo sapiens]
Length = 777
Score = 33.1 bits (74), Expect = 0.43
Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 12/104 (11%)
Query: 55 GTQDSPQAPKPITPPTSHQKAQSAPKS--------PPRLPEGHGDGQSSEKAPEVSHI-- 104
G + SP +P P+ P+S +A +P++ P LP G G G SS P I
Sbjct: 515 GREHSPCSPSPLGRPSSETRAFPSPQTLLEDPLRLSPVLPGGGGRGPSSPGNPLDHQITN 574
Query: 105 KKKEVSKTVVSKTYERGGDVSHLSHRYERDAGVL--EPGQPEND 146
++ E S + + D LS E+D ++ PGQ D
Sbjct: 575 ERGEPSYDRLIDPHRAPSDTGSLSSPVEQDRRMMFPPPGQSYPD 618
>gi|31652242 transcription factor 20 isoform 2 [Homo sapiens]
Length = 1938
Score = 33.1 bits (74), Expect = 0.43
Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 21/100 (21%)
Query: 48 PTGWLPGGTQDSPQAPKPITPPTSHQKAQSAPK---SPPRLPEGHGDGQSSEKAPEVSHI 104
P G+ P G + +PI +K Q P PP++PEG DG+ K
Sbjct: 1530 PKGYFPSGKKKG----RPIGSVNKQKKQQQPPPPPPQPPQIPEGSADGEPKPKKQRQRRE 1585
Query: 105 KKKEVSKTVVSKTYERGGDVSHLSHRYERDAGVLEPGQPE 144
++K ++ KT ++ ++EP +PE
Sbjct: 1586 RRKPGAQPRKRKT--------------KQAVPIVEPQEPE 1611
>gi|31652244 transcription factor 20 isoform 1 [Homo sapiens]
Length = 1960
Score = 33.1 bits (74), Expect = 0.43
Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 21/100 (21%)
Query: 48 PTGWLPGGTQDSPQAPKPITPPTSHQKAQSAPK---SPPRLPEGHGDGQSSEKAPEVSHI 104
P G+ P G + +PI +K Q P PP++PEG DG+ K
Sbjct: 1530 PKGYFPSGKKKG----RPIGSVNKQKKQQQPPPPPPQPPQIPEGSADGEPKPKKQRQRRE 1585
Query: 105 KKKEVSKTVVSKTYERGGDVSHLSHRYERDAGVLEPGQPE 144
++K ++ KT ++ ++EP +PE
Sbjct: 1586 RRKPGAQPRKRKT--------------KQAVPIVEPQEPE 1611
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 33.1 bits (74), Expect = 0.43
Identities = 30/113 (26%), Positives = 48/113 (42%), Gaps = 25/113 (22%)
Query: 47 EPTGWLPGGTQDSPQAPKPITPPT--SHQKAQSAPKSPPRLPEGHGDGQSSEKAPEVSHI 104
E G P +P + +P+ PP+ S + +S PKSP +LP+ +SS +P+ + +
Sbjct: 372 ERHGGSPQPLATTPLSQEPVNPPSEASPTRDRSPPKSPEKLPQS-SSSESSPPSPQPTKV 430
Query: 105 KK------------------KEVSKTVVSKTYERG---GDVSHLSHRYERDAG 136
+ +E+S + SK G D SH SH R G
Sbjct: 431 SRHASSSPESPKPAPAPGSHREISSSPTSKNRSHGRAKRDKSH-SHTPSRRMG 482
Score = 32.3 bits (72), Expect = 0.73
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 59 SPQAPKPITPPTSHQKAQSAPKSPPRLPEGHGDGQSSEKAPEVSHIKKKEVSKTVVSKTY 118
SP++PKP P SH++ S+P S R HG +++ SH + + ++ T
Sbjct: 437 SPESPKPAPAPGSHREISSSPTSKNR---SHG---RAKRDKSHSHTPSRRMGRSRSPATA 490
Query: 119 ERG 121
+RG
Sbjct: 491 KRG 493
>gi|118498359 ribosomal L1 domain containing 1 [Homo sapiens]
Length = 490
Score = 32.7 bits (73), Expect = 0.56
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 55 GTQDSPQAPKPITPPTSHQKAQSAPKSPPRLPEGHGDGQSSEKAPEVSHIKKKEVSKTVV 114
G + ++P P TP +KA A ++P + E G+S EK P++ KE S ++
Sbjct: 389 GKKSPAKSPNPSTPRGKKRKALPASETP-KAAESETPGKSPEKKPKIKEEAVKEKSPSLG 447
Query: 115 SK 116
K
Sbjct: 448 KK 449
>gi|126116581 retina and anterior neural fold homeobox [Homo
sapiens]
Length = 346
Score = 32.3 bits (72), Expect = 0.73
Identities = 29/117 (24%), Positives = 44/117 (37%), Gaps = 10/117 (8%)
Query: 55 GTQDSPQAPKPITPPTSHQKAQSAPKSP------PRLPEGHGDGQ---SSEKAPEVSHIK 105
G++ SP P P P PK P P LP G G+ S E+ P+ H +
Sbjct: 80 GSEPSPP-PAPAPAPEYEAPRPYCPKEPGEARPSPGLPVGPATGEAKLSEEEQPKKKHRR 138
Query: 106 KKEVSKTVVSKTYERGGDVSHLSHRYERDAGVLEPGQPENDIDRILHSHGSPTRRRK 162
+ T ER + SH Y R+ + PE + + + RR++
Sbjct: 139 NRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRRQE 195
>gi|13540521 basic helix-loop-helix domain containing, class B, 3
[Homo sapiens]
Length = 482
Score = 32.3 bits (72), Expect = 0.73
Identities = 18/38 (47%), Positives = 25/38 (65%), Gaps = 4/38 (10%)
Query: 190 DTE-DSGYGGEAEERPEQD---GVQVAVVRIKRPLPSQ 223
DT+ DSGYGGEAE RP+++ G + V IK+ P +
Sbjct: 235 DTDTDSGYGGEAEARPDREKGKGAGASRVTIKQEPPGE 272
>gi|7662354 MON1 homolog B [Homo sapiens]
Length = 547
Score = 32.3 bits (72), Expect = 0.73
Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 14/94 (14%)
Query: 47 EPTGWLPGGTQDSPQAPKPITPP-------TSHQKAQSAPK-SPPRLPEGHGDGQSSEKA 98
E G G++D Q P P PP TS + +AP+ SP PE GQ + +
Sbjct: 42 EDEGLEETGSKDKDQPPSPSPPPQSEALSSTSRLWSPAAPENSPTCSPESSSGGQGGDPS 101
Query: 99 PEVSHIKKKEVSKTVVSKT----YERGGDVSHLS 128
E ++K V V+S+ Y R G V LS
Sbjct: 102 DEEWRSQRKHV--FVLSEAGKPIYSRYGSVEALS 133
>gi|239756584 PREDICTED: hypothetical protein [Homo sapiens]
Length = 349
Score = 32.0 bits (71), Expect = 0.95
Identities = 28/83 (33%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 43 RQAQEPTGWLPGGT--QDSPQAPKPITPPTSHQKAQSAPKSPPRLPEGHGDGQSSEKAP- 99
R A GW P T Q SP AP+ P +A+ P S L GH G S + P
Sbjct: 208 RAALGTQGWGPWPTRGQRSPLAPR--GRPALEVRAELQPSSRGDLLLGHNLGSPSARGPS 265
Query: 100 EVSHIKKKEVSKTVVSKTYERGG 122
S +KE+ + +K RGG
Sbjct: 266 RSSRENEKEIGYALDTKEDPRGG 288
>gi|239751076 PREDICTED: hypothetical protein [Homo sapiens]
Length = 349
Score = 32.0 bits (71), Expect = 0.95
Identities = 28/83 (33%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 43 RQAQEPTGWLPGGT--QDSPQAPKPITPPTSHQKAQSAPKSPPRLPEGHGDGQSSEKAP- 99
R A GW P T Q SP AP+ P +A+ P S L GH G S + P
Sbjct: 208 RAALGTQGWGPWPTRGQRSPLAPR--GRPALEVRAELQPSSRGDLLLGHNLGSPSARGPS 265
Query: 100 EVSHIKKKEVSKTVVSKTYERGG 122
S +KE+ + +K RGG
Sbjct: 266 RSSRENEKEIGYALDTKEDPRGG 288
>gi|239745563 PREDICTED: hypothetical protein [Homo sapiens]
Length = 349
Score = 32.0 bits (71), Expect = 0.95
Identities = 28/83 (33%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 43 RQAQEPTGWLPGGT--QDSPQAPKPITPPTSHQKAQSAPKSPPRLPEGHGDGQSSEKAP- 99
R A GW P T Q SP AP+ P +A+ P S L GH G S + P
Sbjct: 208 RAALGTQGWGPWPTRGQRSPLAPR--GRPALEVRAELQPSSRGDLLLGHNLGSPSARGPS 265
Query: 100 EVSHIKKKEVSKTVVSKTYERGG 122
S +KE+ + +K RGG
Sbjct: 266 RSSRENEKEIGYALDTKEDPRGG 288
>gi|38787970 tensin like C1 domain containing phosphatase isoform 3
[Homo sapiens]
Length = 1285
Score = 32.0 bits (71), Expect = 0.95
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 52 LPGGTQDSPQAPKPITPPTSHQKAQSAPKSPPRLPEGHGDGQS 94
LP G+ P AP P++P P+ R P GH DG S
Sbjct: 836 LPSGSGPEPLAPSPVSPTFPPSSPSDWPQE--RSPGGHSDGAS 876
Score = 31.6 bits (70), Expect = 1.2
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
Query: 48 PTGW----LPGGTQD--SPQAPKPITPPTSHQKAQSAPKSPPRLPEG 88
P+ W PGG D SP++P P T P P+ PP P+G
Sbjct: 859 PSDWPQERSPGGHSDGASPRSPVPTTLPGLRHAPWQGPRGPPDSPDG 905
>gi|38787957 tensin like C1 domain containing phosphatase isoform 2
[Homo sapiens]
Length = 1409
Score = 32.0 bits (71), Expect = 0.95
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 52 LPGGTQDSPQAPKPITPPTSHQKAQSAPKSPPRLPEGHGDGQS 94
LP G+ P AP P++P P+ R P GH DG S
Sbjct: 960 LPSGSGPEPLAPSPVSPTFPPSSPSDWPQE--RSPGGHSDGAS 1000
Score = 31.6 bits (70), Expect = 1.2
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
Query: 48 PTGW----LPGGTQD--SPQAPKPITPPTSHQKAQSAPKSPPRLPEG 88
P+ W PGG D SP++P P T P P+ PP P+G
Sbjct: 983 PSDWPQERSPGGHSDGASPRSPVPTTLPGLRHAPWQGPRGPPDSPDG 1029
>gi|38787941 tensin like C1 domain containing phosphatase isoform 1
[Homo sapiens]
Length = 1419
Score = 32.0 bits (71), Expect = 0.95
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 52 LPGGTQDSPQAPKPITPPTSHQKAQSAPKSPPRLPEGHGDGQS 94
LP G+ P AP P++P P+ R P GH DG S
Sbjct: 970 LPSGSGPEPLAPSPVSPTFPPSSPSDWPQE--RSPGGHSDGAS 1010
Score = 31.6 bits (70), Expect = 1.2
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
Query: 48 PTGW----LPGGTQD--SPQAPKPITPPTSHQKAQSAPKSPPRLPEG 88
P+ W PGG D SP++P P T P P+ PP P+G
Sbjct: 993 PSDWPQERSPGGHSDGASPRSPVPTTLPGLRHAPWQGPRGPPDSPDG 1039
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 32.0 bits (71), Expect = 0.95
Identities = 26/97 (26%), Positives = 34/97 (35%), Gaps = 17/97 (17%)
Query: 46 QEPTGWLPGGTQDSP--------QAPKPITPPTSHQKAQSAPKSPPRLPEGHGDGQSSEK 97
++ TGW Q P Q P+ P S A + PK PP P E
Sbjct: 81 KDGTGWASKQEQSDPKSSDASTAQPPESQPLPASQTPASNQPKRPPAAP---------EN 131
Query: 98 APEVSHIKKKEVSKTVVSKTYERGGDVSHLSHRYERD 134
P V K +V + GG S L R+ R+
Sbjct: 132 TPLVPSGVKSWAQASVTHGAHGDGGRASSLLSRFSRE 168
>gi|33620716 retinoblastoma-binding protein 6 isoform 2 [Homo sapiens]
Length = 1758
Score = 32.0 bits (71), Expect = 0.95
Identities = 25/111 (22%), Positives = 47/111 (42%), Gaps = 9/111 (8%)
Query: 39 ENSIRQAQEPTGWLPGGTQDSPQAPKPI------TPPTSHQKAQSAPKSPPRLPEGHGDG 92
EN ++ A+ P + G + SP++ PI TP T + K+ S+ + ++ G
Sbjct: 998 ENIVKPAKGPQEKVDGERERSPRSEPPIKKAKEETPKTDNTKSSSSSQKDEKIT---GTP 1054
Query: 93 QSSEKAPEVSHIKKKEVSKTVVSKTYERGGDVSHLSHRYERDAGVLEPGQP 143
+ + H + K V + V K Y + L+ + E+ E +P
Sbjct: 1055 RKAHSKSAKEHQETKPVKEEKVKKDYSKDVKSEKLTTKEEKAKKPNEKNKP 1105
>gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo sapiens]
Length = 1792
Score = 32.0 bits (71), Expect = 0.95
Identities = 25/111 (22%), Positives = 47/111 (42%), Gaps = 9/111 (8%)
Query: 39 ENSIRQAQEPTGWLPGGTQDSPQAPKPI------TPPTSHQKAQSAPKSPPRLPEGHGDG 92
EN ++ A+ P + G + SP++ PI TP T + K+ S+ + ++ G
Sbjct: 1032 ENIVKPAKGPQEKVDGERERSPRSEPPIKKAKEETPKTDNTKSSSSSQKDEKIT---GTP 1088
Query: 93 QSSEKAPEVSHIKKKEVSKTVVSKTYERGGDVSHLSHRYERDAGVLEPGQP 143
+ + H + K V + V K Y + L+ + E+ E +P
Sbjct: 1089 RKAHSKSAKEHQETKPVKEEKVKKDYSKDVKSEKLTTKEEKAKKPNEKNKP 1139
>gi|149274646 hypothetical protein LOC57710 [Homo sapiens]
Length = 1190
Score = 32.0 bits (71), Expect = 0.95
Identities = 29/119 (24%), Positives = 49/119 (41%), Gaps = 11/119 (9%)
Query: 2 APGEKESGEGPAKSALRKIRTATLVISLARGWQQWANENSIRQAQEPTGWL-PGGTQDSP 60
AP ES ++ + + + ++S + Q A ++ QA +PT L P G +P
Sbjct: 751 APMTPESSGPGGQAQVTESHESLEIVSPSSLQQSHAEPSAPHQAWQPTASLCPEGWAPTP 810
Query: 61 QAPKPITPPTSHQKA----------QSAPKSPPRLPEGHGDGQSSEKAPEVSHIKKKEV 109
+ T P SH+KA Q+ P PR P ++ E P + + +V
Sbjct: 811 PPSRKTTSPVSHRKAALAGLLRLGDQTEPVGIPRPPSRSAVLRTCELPPSQTQPSRPQV 869
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.131 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,056,958
Number of Sequences: 37866
Number of extensions: 885553
Number of successful extensions: 4373
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 127
Number of HSP's that attempted gapping in prelim test: 4034
Number of HSP's gapped (non-prelim): 448
length of query: 381
length of database: 18,247,518
effective HSP length: 104
effective length of query: 277
effective length of database: 14,309,454
effective search space: 3963718758
effective search space used: 3963718758
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.