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Search of human proteins with 21040241
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|21040241 crumbs 3 isoform a precursor [Homo sapiens]
(120 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|21040241 crumbs 3 isoform a precursor [Homo sapiens] 233 3e-62
gi|28144893 crumbs 3 isoform b precursor [Homo sapiens] 192 4e-50
gi|112420992 crumbs homolog 2 [Homo sapiens] 54 2e-08
gi|41327708 crumbs homolog 1 precursor [Homo sapiens] 39 0.001
gi|40217823 SLIT and NTRK-like family, member 5 [Homo sapiens] 34 0.022
gi|118130809 endothelial cell-specific chemotaxis regulator [Hom... 33 0.038
gi|28373194 adhesion regulating molecule 1 precursor [Homo sapiens] 33 0.050
gi|28373192 adhesion regulating molecule 1 precursor [Homo sapiens] 33 0.050
gi|4506303 protein tyrosine phosphatase, receptor type, A isofor... 31 0.19
gi|5032005 protein tyrosine phosphatase, receptor type, C-associ... 30 0.32
gi|11863152 jumonji, AT rich interactive domain 2 protein [Homo ... 30 0.42
gi|15029530 leucine rich repeat containing 4 [Homo sapiens] 30 0.42
gi|125988400 leukocyte immunoglobulin-like receptor, subfamily B... 30 0.55
gi|21687218 CD300 molecule-like family member g [Homo sapiens] 30 0.55
gi|112789532 poliovirus receptor related 2 isoform delta precurs... 29 0.72
gi|21361116 versican isoform 1 [Homo sapiens] 29 0.94
gi|142976816 paraneoplastic cancer-testis-brain antigen [Homo sa... 29 0.94
gi|126362953 leukocyte immunoglobulin-like receptor, subfamily B... 28 1.2
gi|126362951 leukocyte immunoglobulin-like receptor, subfamily B... 28 1.2
gi|222144249 dynein heavy chain domain 1 isoform 1 [Homo sapiens] 28 1.6
gi|126362957 leukocyte immunoglobulin-like receptor, subfamily B... 28 1.6
gi|116488411 leukocyte immunoglobulin-like receptor, subfamily B... 28 1.6
gi|102468717 mediator complex subunit 13 [Homo sapiens] 28 1.6
gi|24308394 hypothetical protein LOC140893 [Homo sapiens] 28 1.6
gi|134288890 DIS3 mitotic control homolog (S. cerevisiae)-like 2... 28 2.1
gi|126012571 heparan sulfate proteoglycan 2 [Homo sapiens] 27 2.7
gi|239745938 PREDICTED: hypothetical protein [Homo sapiens] 27 2.7
gi|53831995 splicing factor 3a, subunit 1, 120kDa isoform 2 [Hom... 27 2.7
gi|5032087 splicing factor 3a, subunit 1, 120kDa isoform 1 [Homo... 27 2.7
gi|239742880 PREDICTED: hypothetical protein XP_002342669 [Homo ... 27 4.6
>gi|21040241 crumbs 3 isoform a precursor [Homo sapiens]
Length = 120
Score = 233 bits (594), Expect = 3e-62
Identities = 120/120 (100%), Positives = 120/120 (100%)
Query: 1 MANPGLGLLLALGLPFLLARWGRAWGQIQTTSANENSTVLPSSTSSSSDGNLRPEAITAI 60
MANPGLGLLLALGLPFLLARWGRAWGQIQTTSANENSTVLPSSTSSSSDGNLRPEAITAI
Sbjct: 1 MANPGLGLLLALGLPFLLARWGRAWGQIQTTSANENSTVLPSSTSSSSDGNLRPEAITAI 60
Query: 61 IVVFSLLAALLLAVGLALLVRKLREKRQTEGTYRPSSEEQVGARVPPTPNLKLPPEERLI 120
IVVFSLLAALLLAVGLALLVRKLREKRQTEGTYRPSSEEQVGARVPPTPNLKLPPEERLI
Sbjct: 61 IVVFSLLAALLLAVGLALLVRKLREKRQTEGTYRPSSEEQVGARVPPTPNLKLPPEERLI 120
>gi|28144893 crumbs 3 isoform b precursor [Homo sapiens]
Length = 123
Score = 192 bits (489), Expect = 4e-50
Identities = 100/100 (100%), Positives = 100/100 (100%)
Query: 1 MANPGLGLLLALGLPFLLARWGRAWGQIQTTSANENSTVLPSSTSSSSDGNLRPEAITAI 60
MANPGLGLLLALGLPFLLARWGRAWGQIQTTSANENSTVLPSSTSSSSDGNLRPEAITAI
Sbjct: 1 MANPGLGLLLALGLPFLLARWGRAWGQIQTTSANENSTVLPSSTSSSSDGNLRPEAITAI 60
Query: 61 IVVFSLLAALLLAVGLALLVRKLREKRQTEGTYRPSSEEQ 100
IVVFSLLAALLLAVGLALLVRKLREKRQTEGTYRPSSEEQ
Sbjct: 61 IVVFSLLAALLLAVGLALLVRKLREKRQTEGTYRPSSEEQ 100
>gi|112420992 crumbs homolog 2 [Homo sapiens]
Length = 1285
Score = 54.3 bits (129), Expect = 2e-08
Identities = 29/67 (43%), Positives = 40/67 (59%)
Query: 54 PEAITAIIVVFSLLAALLLAVGLALLVRKLREKRQTEGTYRPSSEEQVGARVPPTPNLKL 113
P + + V + LLL +GL + R++RQ+EGTY PS +E GAR+ LK+
Sbjct: 1219 PFPLLEVAVPAACACLLLLLLGLLSGILAARKRRQSEGTYSPSQQEVAGARLEMDSVLKV 1278
Query: 114 PPEERLI 120
PPEERLI
Sbjct: 1279 PPEERLI 1285
>gi|41327708 crumbs homolog 1 precursor [Homo sapiens]
Length = 1406
Score = 38.5 bits (88), Expect = 0.001
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 62 VVFSLLAALLLAVGLALLVRKLREKRQTEGTYRPSSEEQVGARVPPTPNLKLPPEERLI 120
V +LL LLLA+ +++ KR T+GTY PS +E+ G+RV + P ERLI
Sbjct: 1351 VTVALLLILLLAIVASVVTSN---KRATQGTYSPSRQEKEGSRVEMWNLMPPPAMERLI 1406
>gi|40217823 SLIT and NTRK-like family, member 5 [Homo sapiens]
Length = 958
Score = 34.3 bits (77), Expect = 0.022
Identities = 18/69 (26%), Positives = 37/69 (53%)
Query: 30 TTSANENSTVLPSSTSSSSDGNLRPEAITAIIVVFSLLAALLLAVGLALLVRKLREKRQT 89
T + NST P+S + + P ++ + ++ + ++ +A GL +LV K R+K Q+
Sbjct: 638 TPAVRLNSTGAPASLGAGGGASSVPLSVLILSLLLVFIMSVFVAAGLFVLVMKRRKKNQS 697
Query: 90 EGTYRPSSE 98
+ T +S+
Sbjct: 698 DHTSTNNSD 706
>gi|118130809 endothelial cell-specific chemotaxis regulator [Homo
sapiens]
Length = 205
Score = 33.5 bits (75), Expect = 0.038
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 32 SANENSTVLPSSTSSSSDGNLRPEAITAIIVVFSLLAALLLAVGLALLVRKLREKRQTEG 91
S E++T+LPS TS + L A I + L+ +++ VG+ L K R+ +++E
Sbjct: 103 SMREDATILPSPTSETV---LTVAAFGVISFIVILVVVVIILVGVVSLRFKCRKSKESED 159
Query: 92 TYRPSS 97
+P S
Sbjct: 160 PQKPGS 165
>gi|28373194 adhesion regulating molecule 1 precursor [Homo sapiens]
Length = 407
Score = 33.1 bits (74), Expect = 0.050
Identities = 20/55 (36%), Positives = 28/55 (50%)
Query: 5 GLGLLLALGLPFLLARWGRAWGQIQTTSANENSTVLPSSTSSSSDGNLRPEAITA 59
GLG L GL LL G ++S ++++ V PSST+SS+ P A A
Sbjct: 182 GLGALTGPGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAA 236
>gi|28373192 adhesion regulating molecule 1 precursor [Homo sapiens]
Length = 407
Score = 33.1 bits (74), Expect = 0.050
Identities = 20/55 (36%), Positives = 28/55 (50%)
Query: 5 GLGLLLALGLPFLLARWGRAWGQIQTTSANENSTVLPSSTSSSSDGNLRPEAITA 59
GLG L GL LL G ++S ++++ V PSST+SS+ P A A
Sbjct: 182 GLGALTGPGLASLLGSSGPPGSSSSSSSRSQSAAVTPSSTTSSTRATPAPSAPAA 236
>gi|4506303 protein tyrosine phosphatase, receptor type, A isoform 1
precursor [Homo sapiens]
Length = 802
Score = 31.2 bits (69), Expect = 0.19
Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 9/100 (9%)
Query: 25 WGQIQTTSANENSTVLPSSTSSSSDGNLRPEAITAIIVVFSLLAALLLAVGLALL-VRKL 83
W +T+A T PS S S D I ++ + SLL + + + L +L +K
Sbjct: 121 WEGNSSTAATTPETFPPSGNSDSKDRRDETPIIAVMVALSSLLVIVFIIIVLYMLRFKKY 180
Query: 84 REKRQTEGTYRPS---SEEQVGARVP-----PTPNLKLPP 115
++ ++R S +E+ VP P+ N K PP
Sbjct: 181 KQAGSHSNSFRLSNGRTEDVEPQSVPLLARSPSTNRKYPP 220
>gi|5032005 protein tyrosine phosphatase, receptor type,
C-associated protein [Homo sapiens]
Length = 206
Score = 30.4 bits (67), Expect = 0.32
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 58 TAIIVVFSLLAALLLAVGLALLVRKLREKRQTEGTYRPS 96
+++ VV LL LLLA GLAL R+L R + G Y P+
Sbjct: 32 SSVTVVLLLLLLLLLATGLALAWRRL--SRDSGGYYHPA 68
>gi|11863152 jumonji, AT rich interactive domain 2 protein [Homo
sapiens]
Length = 1246
Score = 30.0 bits (66), Expect = 0.42
Identities = 27/105 (25%), Positives = 40/105 (38%), Gaps = 10/105 (9%)
Query: 26 GQIQTTSANENSTVLPSSTSSSS----------DGNLRPEAITAIIVVFSLLAALLLAVG 75
G+ ++++A VL +S S G L P++ T + L L L G
Sbjct: 377 GKTESSNAKTRKQVLSLGGASKSTGPAVNGLKVSGRLNPKSCTKEVGGRQLREGLQLREG 436
Query: 76 LALLVRKLREKRQTEGTYRPSSEEQVGARVPPTPNLKLPPEERLI 120
L R+L E Q E P + + A P K P E L+
Sbjct: 437 LRNSKRRLEEAHQAEKPQSPPKKMKGAAGPAEGPGKKAPAERGLL 481
>gi|15029530 leucine rich repeat containing 4 [Homo sapiens]
Length = 653
Score = 30.0 bits (66), Expect = 0.42
Identities = 18/65 (27%), Positives = 30/65 (46%)
Query: 28 IQTTSANENSTVLPSSTSSSSDGNLRPEAITAIIVVFSLLAALLLAVGLALLVRKLREKR 87
IQTT + V + T+ +L T I++ +A LLA + ++ KLR++
Sbjct: 495 IQTTRVPKQVAVPATDTTDKMQTSLDEVMKTTKIIIGCFVAVTLLAAAMLIVFYKLRKRH 554
Query: 88 QTEGT 92
Q T
Sbjct: 555 QQRST 559
>gi|125988400 leukocyte immunoglobulin-like receptor, subfamily B,
member 2 isoform 1 [Homo sapiens]
Length = 598
Score = 29.6 bits (65), Expect = 0.55
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
Query: 26 GQIQTTSANENSTVLPSSTSSSSDGNLRPEAITAIIVVFSLLAALLLAVGLALLVRKLRE 85
G I T + E+ + P+ + S + I+V LL LLL L L++R R+
Sbjct: 431 GPISTPAGPEDQPLTPTGSDPQSGLGRHLGVVIGILVAVVLLLLLLLL--LFLILRHRRQ 488
Query: 86 KRQTEGTYRPSSEEQVGARVPPTP 109
+ T R + + V P P
Sbjct: 489 GKHWTSTQRKADFQHPAGAVGPEP 512
>gi|21687218 CD300 molecule-like family member g [Homo sapiens]
Length = 332
Score = 29.6 bits (65), Expect = 0.55
Identities = 23/98 (23%), Positives = 43/98 (43%), Gaps = 9/98 (9%)
Query: 27 QIQTTSANENSTVLPSSTSSSSDGNLRPEAITAIIVVFSLLAALLLAVGLALLVRKLREK 86
Q+ +TSA + S L S +S + ++V+ SLL+A L + L+ +E
Sbjct: 219 QLNSTSAEDTSPALSSGSSKPRVSIPMVRILAPVLVLLSLLSAAGLIAFCSHLLLWRKEA 278
Query: 87 RQTEGTYR---------PSSEEQVGARVPPTPNLKLPP 115
+Q T R + E++ ++ P + +PP
Sbjct: 279 QQATETQRNEKFCLSRLTAEEKEAPSQAPEGDVISMPP 316
>gi|112789532 poliovirus receptor related 2 isoform delta precursor
[Homo sapiens]
Length = 538
Score = 29.3 bits (64), Expect = 0.72
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 62 VVFSLLAALLLAVGLALLVRKLREKRQTEGTYRPSSEEQVGARVPPTPNLKLPPEE 117
++ +++A + A G+ L+ R+ R+++ +G E + PPTP KL +E
Sbjct: 365 IIAAIIATAVAATGI-LICRQQRKEQTLQGAEEDEDLEGPPSYKPPTPKAKLEAQE 419
>gi|21361116 versican isoform 1 [Homo sapiens]
Length = 3396
Score = 28.9 bits (63), Expect = 0.94
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 90 EGTYRPSSEEQVGARVPP--TPNLKLPPEE 117
E T++PSSEE + PP +P+ KL P E
Sbjct: 2873 EATFKPSSEEYLHITEPPSLSPDTKLEPSE 2902
>gi|142976816 paraneoplastic cancer-testis-brain antigen [Homo
sapiens]
Length = 463
Score = 28.9 bits (63), Expect = 0.94
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 75 GLALLVRKLREKRQTEGTYRPSSEEQVGARVPPTPNLKL 113
G LV+ LRE+ + E T P E G V P P ++
Sbjct: 322 GFLALVKLLREEEEWEATLGPDRESLEGLEVAPRPPARI 360
>gi|126362953 leukocyte immunoglobulin-like receptor, subfamily B,
member 1 isoform 3 [Homo sapiens]
Length = 651
Score = 28.5 bits (62), Expect = 1.2
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
Query: 26 GQIQTTSANENSTVLPSSTSSSSDGNLRPEAITAIIVVFSLLAALLLAVGLALLVRKLRE 85
G T++ E+ + P+ + S + I+V LL LLL L L++R R+
Sbjct: 432 GPTSTSAGPEDQPLTPTGSDPQSGLGRHLGVVIGILVAVILLLLLLLL--LFLILRHRRQ 489
Query: 86 KRQTEGTYRPSSEEQVGARVPPTP 109
+ T R + + V P P
Sbjct: 490 GKHWTSTQRKADFQHPAGAVGPEP 513
>gi|126362951 leukocyte immunoglobulin-like receptor, subfamily B,
member 1 isoform 2 [Homo sapiens]
Length = 652
Score = 28.5 bits (62), Expect = 1.2
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
Query: 26 GQIQTTSANENSTVLPSSTSSSSDGNLRPEAITAIIVVFSLLAALLLAVGLALLVRKLRE 85
G T++ E+ + P+ + S + I+V LL LLL L L++R R+
Sbjct: 432 GPTSTSAGPEDQPLTPTGSDPQSGLGRHLGVVIGILVAVILLLLLLLL--LFLILRHRRQ 489
Query: 86 KRQTEGTYRPSSEEQVGARVPPTP 109
+ T R + + V P P
Sbjct: 490 GKHWTSTQRKADFQHPAGAVGPEP 513
>gi|222144249 dynein heavy chain domain 1 isoform 1 [Homo sapiens]
Length = 4753
Score = 28.1 bits (61), Expect = 1.6
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 4 PGLGLLLALGLPFLLARWGRAWGQIQTTSANENSTVLPSSTSSSSDG 50
P GLLL +GL L A W G +Q + +++ S + P S S+ + G
Sbjct: 4647 PERGLLL-IGLQVLHAEWDPIAGALQDSPSSQPSPLPPVSISTQAPG 4692
>gi|126362957 leukocyte immunoglobulin-like receptor, subfamily B,
member 1 isoform 4 [Homo sapiens]
Length = 651
Score = 28.1 bits (61), Expect = 1.6
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Query: 30 TTSANENSTVLPSSTSSSSDGNLRPEAITAIIVVFSLLAALLLAVGLALLVRKLREKRQT 89
+TS E+ + P+ + S + I+V LL LLL L L++R R+ +
Sbjct: 435 STSGPEDQPLTPTGSDPQSGLGRHLGVVIGILVAVILLLLLLLL--LFLILRHRRQGKHW 492
Query: 90 EGTYRPSSEEQVGARVPPTP 109
T R + + V P P
Sbjct: 493 TSTQRKADFQHPAGAVGPEP 512
>gi|116488411 leukocyte immunoglobulin-like receptor, subfamily B,
member 1 isoform 1 [Homo sapiens]
Length = 650
Score = 28.1 bits (61), Expect = 1.6
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Query: 30 TTSANENSTVLPSSTSSSSDGNLRPEAITAIIVVFSLLAALLLAVGLALLVRKLREKRQT 89
+TS E+ + P+ + S + I+V LL LLL L L++R R+ +
Sbjct: 435 STSGPEDQPLTPTGSDPQSGLGRHLGVVIGILVAVILLLLLLLL--LFLILRHRRQGKHW 492
Query: 90 EGTYRPSSEEQVGARVPPTP 109
T R + + V P P
Sbjct: 493 TSTQRKADFQHPAGAVGPEP 512
>gi|102468717 mediator complex subunit 13 [Homo sapiens]
Length = 2174
Score = 28.1 bits (61), Expect = 1.6
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 28 IQTTSANENSTVLPSSTSSSSDGNL 52
I T+ A NST+ +STSSSS NL
Sbjct: 1522 ISTSVATANSTLTTASTSSSSSSNL 1546
>gi|24308394 hypothetical protein LOC140893 [Homo sapiens]
Length = 664
Score = 28.1 bits (61), Expect = 1.6
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 11 ALGLPFLLARWGRAWGQIQTTSANENSTVLPSSTSSSS 48
AL P L+ WGRA GQ A ++ ++ P++ ++S
Sbjct: 437 ALDKPLDLSEWGRARGQDTPKPAGQHGSLSPAAAHTAS 474
>gi|134288890 DIS3 mitotic control homolog (S. cerevisiae)-like 2
[Homo sapiens]
Length = 885
Score = 27.7 bits (60), Expect = 2.1
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 51 NLRPEAITAIIVVFSLLAALLLAVGLALLVRKLREKRQTEGTYRPSSEEQ 100
++ E +I +FSL+ +L A AL + ++ T+G P EE+
Sbjct: 824 DMEQEPAQQVITIFSLVEVVLQAESTALKYSAILKRPGTQGHLGPEKEEE 873
>gi|126012571 heparan sulfate proteoglycan 2 [Homo sapiens]
Length = 4391
Score = 27.3 bits (59), Expect = 2.7
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Query: 10 LALGLPFLLARWGRAWGQIQT------TSANENSTVLPSSTSSSSDGNLRPEAITAIIVV 63
+A+G+P + W WG I + TS T++ S G EA+ A +V
Sbjct: 429 VAIGVPTPIINWRLNWGHIPSHPRVTVTSEGGRGTLIIRDVKESDQGAYTCEAMNARGMV 488
Query: 64 FSL 66
F +
Sbjct: 489 FGI 491
>gi|239745938 PREDICTED: hypothetical protein [Homo sapiens]
Length = 336
Score = 27.3 bits (59), Expect = 2.7
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 17/64 (26%)
Query: 20 RWGRAWGQIQTTSANENSTVLPSSTSSSSDGNLRPE----AITAIIVVFSLLAALLLAVG 75
RWGR+ Q+ T S++ G + PE A+T ++VVF LL ++ +
Sbjct: 56 RWGRSLQQLGWVG-----------TWSAAVGTMAPEAAFCAVTGVVVVFQLLQ--IIGIS 102
Query: 76 LALL 79
L LL
Sbjct: 103 LVLL 106
>gi|53831995 splicing factor 3a, subunit 1, 120kDa isoform 2 [Homo
sapiens]
Length = 728
Score = 27.3 bits (59), Expect = 2.7
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 82 KLREKRQTEGTYRPSSEEQVGARVPPTPNLKLPP 115
+L + Q + S +E+ G +VPP P +PP
Sbjct: 280 QLDQDTQVQDMDEGSDDEEEGQKVPPPPETPMPP 313
>gi|5032087 splicing factor 3a, subunit 1, 120kDa isoform 1 [Homo
sapiens]
Length = 793
Score = 27.3 bits (59), Expect = 2.7
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 82 KLREKRQTEGTYRPSSEEQVGARVPPTPNLKLPP 115
+L + Q + S +E+ G +VPP P +PP
Sbjct: 345 QLDQDTQVQDMDEGSDDEEEGQKVPPPPETPMPP 378
>gi|239742880 PREDICTED: hypothetical protein XP_002342669 [Homo
sapiens]
Length = 205
Score = 26.6 bits (57), Expect = 4.6
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 15 PFLLARWGRAWGQIQTTSANENSTVLPSSTSSSSDGNLRPEAI 57
PF+L + W Q + A +T PSS SSSS L P+ +
Sbjct: 15 PFILQKHSYGWTQGHSVLAI--TTTSPSSFSSSSQNYLPPDQV 55
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.133 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,834,453
Number of Sequences: 37866
Number of extensions: 181934
Number of successful extensions: 943
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 914
Number of HSP's gapped (non-prelim): 43
length of query: 120
length of database: 18,247,518
effective HSP length: 89
effective length of query: 31
effective length of database: 14,877,444
effective search space: 461200764
effective search space used: 461200764
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.