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Search of human proteins with 209364528
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|209364528 nei like 2 isoform b [Homo sapiens]
(271 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|209364528 nei like 2 isoform b [Homo sapiens] 570 e-163
gi|209364526 nei like 2 isoform a [Homo sapiens] 570 e-163
gi|21450800 nei like 2 isoform a [Homo sapiens] 570 e-163
gi|209364530 nei like 2 isoform c [Homo sapiens] 360 e-100
gi|157388969 nei endonuclease VIII-like 3 [Homo sapiens] 59 4e-09
gi|205360991 nei endonuclease VIII-like 1 [Homo sapiens] 45 9e-05
gi|194097341 period 1 [Homo sapiens] 35 0.053
gi|23510368 homeobox D11 [Homo sapiens] 35 0.069
gi|40807477 retinoic acid induced 1 [Homo sapiens] 35 0.091
gi|153792074 proline rich 12 [Homo sapiens] 32 0.45
gi|40795667 ubiquitin specific protease 4 isoform b [Homo sapiens] 32 0.77
gi|239582741 FERM and PDZ domain containing 1 [Homo sapiens] 31 1.3
gi|209862845 nuclear factor of activated T-cells, cytoplasmic, c... 30 1.7
gi|27886563 nuclear factor of activated T-cells, cytoplasmic, ca... 30 1.7
gi|13540569 sphingosine-1-phosphate phosphatase 1 [Homo sapiens] 30 1.7
gi|118600971 transcription elongation factor A (SII)-like 6 [Hom... 30 1.7
gi|23503317 coiled-coil domain containing 96 [Homo sapiens] 30 1.7
gi|110832843 TBP-associated factor 4 [Homo sapiens] 30 2.2
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 30 2.2
gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2 pre... 30 2.2
gi|153070260 myristoylated alanine-rich protein kinase C substra... 30 2.9
gi|4505419 nucleolar protein 3 [Homo sapiens] 30 2.9
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 30 2.9
gi|29648305 zinc finger, CCHC domain containing 3 [Homo sapiens] 30 2.9
gi|148922852 general transcription factor IIH, polypeptide 2C [H... 29 3.8
gi|148922900 general transcription factor IIH, polypeptide 2B [H... 29 3.8
gi|73476377 LBXCOR1 homolog [Homo sapiens] 29 3.8
gi|6681762 general transcription factor IIH, polypeptide 2, 44kD... 29 3.8
gi|109809737 general transcription factor IIH, polypeptide 2D [H... 29 3.8
gi|13124883 HsKin17 protein [Homo sapiens] 29 3.8
>gi|209364528 nei like 2 isoform b [Homo sapiens]
Length = 271
Score = 570 bits (1469), Expect = e-163
Identities = 271/271 (100%), Positives = 271/271 (100%)
Query: 1 MGPPGSSPTPEPPQKEVQKEGAADPKQVGEPSGQKTLDGSSRSAELVPQGEDDSEYLERD 60
MGPPGSSPTPEPPQKEVQKEGAADPKQVGEPSGQKTLDGSSRSAELVPQGEDDSEYLERD
Sbjct: 1 MGPPGSSPTPEPPQKEVQKEGAADPKQVGEPSGQKTLDGSSRSAELVPQGEDDSEYLERD 60
Query: 61 APAGDAGRWLRVSFGLFGSVWVNDFSRAKKANKRGDWRDPSPRLVLHFGGGGFLAFYNCQ 120
APAGDAGRWLRVSFGLFGSVWVNDFSRAKKANKRGDWRDPSPRLVLHFGGGGFLAFYNCQ
Sbjct: 61 APAGDAGRWLRVSFGLFGSVWVNDFSRAKKANKRGDWRDPSPRLVLHFGGGGFLAFYNCQ 120
Query: 121 LSWSSSPVVTPTCDILSEKFHRGQALEALGQAQPVCYTLLDQRYFSGLGNIIKNEALYRA 180
LSWSSSPVVTPTCDILSEKFHRGQALEALGQAQPVCYTLLDQRYFSGLGNIIKNEALYRA
Sbjct: 121 LSWSSSPVVTPTCDILSEKFHRGQALEALGQAQPVCYTLLDQRYFSGLGNIIKNEALYRA 180
Query: 181 GIHPLSLGSVLSASRREVLVDHVVEFSTAWLQGKFQGRPQHTQVYQKEQCPAGHQVMKEA 240
GIHPLSLGSVLSASRREVLVDHVVEFSTAWLQGKFQGRPQHTQVYQKEQCPAGHQVMKEA
Sbjct: 181 GIHPLSLGSVLSASRREVLVDHVVEFSTAWLQGKFQGRPQHTQVYQKEQCPAGHQVMKEA 240
Query: 241 FGPEDGLQRLTWWCPQCQPQLSEEPEQCQFS 271
FGPEDGLQRLTWWCPQCQPQLSEEPEQCQFS
Sbjct: 241 FGPEDGLQRLTWWCPQCQPQLSEEPEQCQFS 271
>gi|209364526 nei like 2 isoform a [Homo sapiens]
Length = 332
Score = 570 bits (1469), Expect = e-163
Identities = 271/271 (100%), Positives = 271/271 (100%)
Query: 1 MGPPGSSPTPEPPQKEVQKEGAADPKQVGEPSGQKTLDGSSRSAELVPQGEDDSEYLERD 60
MGPPGSSPTPEPPQKEVQKEGAADPKQVGEPSGQKTLDGSSRSAELVPQGEDDSEYLERD
Sbjct: 62 MGPPGSSPTPEPPQKEVQKEGAADPKQVGEPSGQKTLDGSSRSAELVPQGEDDSEYLERD 121
Query: 61 APAGDAGRWLRVSFGLFGSVWVNDFSRAKKANKRGDWRDPSPRLVLHFGGGGFLAFYNCQ 120
APAGDAGRWLRVSFGLFGSVWVNDFSRAKKANKRGDWRDPSPRLVLHFGGGGFLAFYNCQ
Sbjct: 122 APAGDAGRWLRVSFGLFGSVWVNDFSRAKKANKRGDWRDPSPRLVLHFGGGGFLAFYNCQ 181
Query: 121 LSWSSSPVVTPTCDILSEKFHRGQALEALGQAQPVCYTLLDQRYFSGLGNIIKNEALYRA 180
LSWSSSPVVTPTCDILSEKFHRGQALEALGQAQPVCYTLLDQRYFSGLGNIIKNEALYRA
Sbjct: 182 LSWSSSPVVTPTCDILSEKFHRGQALEALGQAQPVCYTLLDQRYFSGLGNIIKNEALYRA 241
Query: 181 GIHPLSLGSVLSASRREVLVDHVVEFSTAWLQGKFQGRPQHTQVYQKEQCPAGHQVMKEA 240
GIHPLSLGSVLSASRREVLVDHVVEFSTAWLQGKFQGRPQHTQVYQKEQCPAGHQVMKEA
Sbjct: 242 GIHPLSLGSVLSASRREVLVDHVVEFSTAWLQGKFQGRPQHTQVYQKEQCPAGHQVMKEA 301
Query: 241 FGPEDGLQRLTWWCPQCQPQLSEEPEQCQFS 271
FGPEDGLQRLTWWCPQCQPQLSEEPEQCQFS
Sbjct: 302 FGPEDGLQRLTWWCPQCQPQLSEEPEQCQFS 332
>gi|21450800 nei like 2 isoform a [Homo sapiens]
Length = 332
Score = 570 bits (1469), Expect = e-163
Identities = 271/271 (100%), Positives = 271/271 (100%)
Query: 1 MGPPGSSPTPEPPQKEVQKEGAADPKQVGEPSGQKTLDGSSRSAELVPQGEDDSEYLERD 60
MGPPGSSPTPEPPQKEVQKEGAADPKQVGEPSGQKTLDGSSRSAELVPQGEDDSEYLERD
Sbjct: 62 MGPPGSSPTPEPPQKEVQKEGAADPKQVGEPSGQKTLDGSSRSAELVPQGEDDSEYLERD 121
Query: 61 APAGDAGRWLRVSFGLFGSVWVNDFSRAKKANKRGDWRDPSPRLVLHFGGGGFLAFYNCQ 120
APAGDAGRWLRVSFGLFGSVWVNDFSRAKKANKRGDWRDPSPRLVLHFGGGGFLAFYNCQ
Sbjct: 122 APAGDAGRWLRVSFGLFGSVWVNDFSRAKKANKRGDWRDPSPRLVLHFGGGGFLAFYNCQ 181
Query: 121 LSWSSSPVVTPTCDILSEKFHRGQALEALGQAQPVCYTLLDQRYFSGLGNIIKNEALYRA 180
LSWSSSPVVTPTCDILSEKFHRGQALEALGQAQPVCYTLLDQRYFSGLGNIIKNEALYRA
Sbjct: 182 LSWSSSPVVTPTCDILSEKFHRGQALEALGQAQPVCYTLLDQRYFSGLGNIIKNEALYRA 241
Query: 181 GIHPLSLGSVLSASRREVLVDHVVEFSTAWLQGKFQGRPQHTQVYQKEQCPAGHQVMKEA 240
GIHPLSLGSVLSASRREVLVDHVVEFSTAWLQGKFQGRPQHTQVYQKEQCPAGHQVMKEA
Sbjct: 242 GIHPLSLGSVLSASRREVLVDHVVEFSTAWLQGKFQGRPQHTQVYQKEQCPAGHQVMKEA 301
Query: 241 FGPEDGLQRLTWWCPQCQPQLSEEPEQCQFS 271
FGPEDGLQRLTWWCPQCQPQLSEEPEQCQFS
Sbjct: 302 FGPEDGLQRLTWWCPQCQPQLSEEPEQCQFS 332
>gi|209364530 nei like 2 isoform c [Homo sapiens]
Length = 216
Score = 360 bits (923), Expect = e-100
Identities = 170/174 (97%), Positives = 171/174 (98%)
Query: 98 RDPSPRLVLHFGGGGFLAFYNCQLSWSSSPVVTPTCDILSEKFHRGQALEALGQAQPVCY 157
+D RLVLHFGGGGFLAFYNCQLSWSSSPVVTPTCDILSEKFHRGQALEALGQAQPVCY
Sbjct: 43 QDTQVRLVLHFGGGGFLAFYNCQLSWSSSPVVTPTCDILSEKFHRGQALEALGQAQPVCY 102
Query: 158 TLLDQRYFSGLGNIIKNEALYRAGIHPLSLGSVLSASRREVLVDHVVEFSTAWLQGKFQG 217
TLLDQRYFSGLGNIIKNEALYRAGIHPLSLGSVLSASRREVLVDHVVEFSTAWLQGKFQG
Sbjct: 103 TLLDQRYFSGLGNIIKNEALYRAGIHPLSLGSVLSASRREVLVDHVVEFSTAWLQGKFQG 162
Query: 218 RPQHTQVYQKEQCPAGHQVMKEAFGPEDGLQRLTWWCPQCQPQLSEEPEQCQFS 271
RPQHTQVYQKEQCPAGHQVMKEAFGPEDGLQRLTWWCPQCQPQLSEEPEQCQFS
Sbjct: 163 RPQHTQVYQKEQCPAGHQVMKEAFGPEDGLQRLTWWCPQCQPQLSEEPEQCQFS 216
>gi|157388969 nei endonuclease VIII-like 3 [Homo sapiens]
Length = 605
Score = 58.9 bits (141), Expect = 4e-09
Identities = 35/114 (30%), Positives = 62/114 (54%), Gaps = 6/114 (5%)
Query: 159 LLDQRYFSGLGNIIKNEALYRAGIHPLSLGSVLSASRREVLVDHVVEFSTAWLQGKFQG- 217
L+DQ G+GNIIKNEAL+ +G+HP L+ + L+ + +FS + + + G
Sbjct: 181 LMDQNVLPGVGNIIKNEALFDSGLHPAVKVCQLTDEQIHHLMKMIRDFSILFYRCRKAGL 240
Query: 218 -RPQHTQVYQKEQCPAGH-QVMKEAFGPEDGLQRLTWWCPQCQPQLSEEPEQCQ 269
+H +VY++ C H ++ FG + R+T++CP CQ + + + C+
Sbjct: 241 ALSKHYKVYKRPNCGQCHCRITVCRFGDNN---RMTYFCPHCQKENPQHVDICK 291
>gi|205360991 nei endonuclease VIII-like 1 [Homo sapiens]
Length = 390
Score = 44.7 bits (104), Expect = 9e-05
Identities = 34/97 (35%), Positives = 44/97 (45%), Gaps = 5/97 (5%)
Query: 100 PSPRLVLHFGGGGFLAFYNCQLSWSSS--PVVTPTCDILSEKFHRGQALEALGQAQPVCY 157
P PRL L F ++ W P V E R A +A + P+C
Sbjct: 106 PGPRLALCFVDIRRFGRWDLGGKWQPGRGPCVLQEYQQFRENVLRNLADKAFDR--PICE 163
Query: 158 TLLDQRYFSGLGNIIKNEALYRAGIHPLSLG-SVLSA 193
LLDQR+F+G+GN ++ E LYR I P SVL A
Sbjct: 164 ALLDQRFFNGIGNYLRAEILYRLKIPPFEKARSVLEA 200
>gi|194097341 period 1 [Homo sapiens]
Length = 1290
Score = 35.4 bits (80), Expect = 0.053
Identities = 28/69 (40%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 2 GPPGSSPTPEPPQKEVQKEGAADPKQVGEPSGQKTLDGSSRSAELVPQGEDDSEYLERDA 61
G PGSS P PP E E A +V E S Q L GSS EL+ Q +DS A
Sbjct: 1002 GGPGSSAGPPPPSAEAA-EPEARLAEVTESSNQDALSGSSDLLELLLQ--EDSRSGTGSA 1058
Query: 62 PAGDAGRWL 70
+G G L
Sbjct: 1059 ASGSLGSGL 1067
>gi|23510368 homeobox D11 [Homo sapiens]
Length = 338
Score = 35.0 bits (79), Expect = 0.069
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 2 GPPGSSPTPEPPQKEVQKEGAA---DPKQVGEPSGQKTLDGSSRSAELVPQGEDDSEYLE 58
GPP + P P PP Q EGAA DP+ G ++ +E P+G + +
Sbjct: 187 GPPFAGPQPPPPPAPPQPEGAADKGDPRTGAGGGGGSPCTKATPGSE--PKGAAEGSGGD 244
Query: 59 RDAPAGDAG 67
+ P G+AG
Sbjct: 245 GEGPPGEAG 253
>gi|40807477 retinoic acid induced 1 [Homo sapiens]
Length = 1906
Score = 34.7 bits (78), Expect = 0.091
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 8/68 (11%)
Query: 2 GPPGSSPTPEPPQKEVQKEGAA--DPKQVGEPSGQKTLDGSSRSAELVPQGEDD----SE 55
GPPG + TP PP K K+ AA K+VG+PS + S+ +A +P D S+
Sbjct: 1070 GPPGLTTTPAPPDKLGGKQRAAFKSGKRVGKPSPKAASSPSNPAA--LPVASDSSPMGSK 1127
Query: 56 YLERDAPA 63
E D+P+
Sbjct: 1128 TKETDSPS 1135
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 32.3 bits (72), Expect = 0.45
Identities = 19/65 (29%), Positives = 29/65 (44%)
Query: 3 PPGSSPTPEPPQKEVQKEGAADPKQVGEPSGQKTLDGSSRSAELVPQGEDDSEYLERDAP 62
PP + P+P PP AA P++ PS + +R L + E + E D
Sbjct: 1505 PPPAMPSPPPPPPPAAAPLAAPPEEPAAPSPEDPELPDTRPLHLAKKQETAAVCGETDEE 1564
Query: 63 AGDAG 67
AG++G
Sbjct: 1565 AGESG 1569
>gi|40795667 ubiquitin specific protease 4 isoform b [Homo sapiens]
Length = 916
Score = 31.6 bits (70), Expect = 0.77
Identities = 24/75 (32%), Positives = 29/75 (38%), Gaps = 7/75 (9%)
Query: 92 NKRGDWRDPSPRLVLHFGGGGFLAFYNCQLSWSSSPVVTPTCDI--LSEKFHRGQALEAL 149
N+ G W PR L G GF A YNCQ SS + C + L AL+ L
Sbjct: 219 NEDGTW----PRQTLQSNGSGFSASYNCQ-EPPSSHIQPGLCGLGNLGNTCFMNSALQCL 273
Query: 150 GQAQPVCYTLLDQRY 164
P+ L Y
Sbjct: 274 SNTAPLTDYFLKDEY 288
>gi|239582741 FERM and PDZ domain containing 1 [Homo sapiens]
Length = 1578
Score = 30.8 bits (68), Expect = 1.3
Identities = 40/165 (24%), Positives = 55/165 (33%), Gaps = 22/165 (13%)
Query: 3 PPGSSPTPEPPQKEVQKEGAADPKQVGEPSGQKTLDGSSRSAELVPQGEDDSEYLERDAP 62
PPG+SPTPE ++ GA+ E + + SR E E D
Sbjct: 559 PPGNSPTPEVARRGPSTCGASSTTDSAESEASDSANTESRGYRTSGSSESMDALEEDDL- 617
Query: 63 AGDAGRWLRVSFGLFGSVWVNDFSRAKKANKRGDWRDPSPRLVLHFGGGGFLAFYNCQLS 122
D R +F FGS + + + +R GFL C L
Sbjct: 618 --DTCSSSRSTFFHFGSPGLAESIDSDSQEERSG-----------IETSGFL----CLLD 660
Query: 123 WSSSPVVTPTCDILSEKFHRGQALEALGQAQPVCYTLLDQRYFSG 167
+ P C +F ALE G A + LD R + G
Sbjct: 661 LAQR--ANPQCQ--KTEFSESAALETFGWAPELSTVRLDPRLYEG 701
>gi|209862845 nuclear factor of activated T-cells, cytoplasmic,
calcineurin-dependent 4 isoform 1 [Homo sapiens]
Length = 964
Score = 30.4 bits (67), Expect = 1.7
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Query: 1 MGPPGSSPTPEPPQKEVQKEGAADP-KQVGEPSG----QKTLDGSSRSAELVPQGED 52
+G GS P P PP + G+ P VG P QKT SS A +P+ E+
Sbjct: 353 LGEEGSEPPPPPPLPLARDPGSPGPFDYVGAPPAESIPQKTRRTSSEQAVALPRSEE 409
>gi|27886563 nuclear factor of activated T-cells, cytoplasmic,
calcineurin-dependent 4 isoform 2 [Homo sapiens]
Length = 902
Score = 30.4 bits (67), Expect = 1.7
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Query: 1 MGPPGSSPTPEPPQKEVQKEGAADP-KQVGEPSG----QKTLDGSSRSAELVPQGED 52
+G GS P P PP + G+ P VG P QKT SS A +P+ E+
Sbjct: 290 LGEEGSEPPPPPPLPLARDPGSPGPFDYVGAPPAESIPQKTRRTSSEQAVALPRSEE 346
>gi|13540569 sphingosine-1-phosphate phosphatase 1 [Homo sapiens]
Length = 441
Score = 30.4 bits (67), Expect = 1.7
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 4 PGSSPTPEPPQKEVQKEGAADPKQVGEPSGQKTLDGSSRSAELVPQGEDDSEYLERDAPA 63
PG+ P+PP + + + A P G P+G + + +AEL P + L R++
Sbjct: 60 PGAPGGPQPPGSD-RNQCPAKPDGGGAPNGVR----NGLAAELGPASPRRAGALRRNSLT 114
Query: 64 GDAGRWLRVS 73
G+ G+ RVS
Sbjct: 115 GEEGQLARVS 124
>gi|118600971 transcription elongation factor A (SII)-like 6 [Homo
sapiens]
Length = 183
Score = 30.4 bits (67), Expect = 1.7
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 2 GPPGSSPTPEPPQKEVQKEGAADPKQVGEPSGQKTLDGSSRSAELVPQGE 51
G G +K+ + EG P+ G+P+ Q +G R+AE P G+
Sbjct: 55 GDEGQLEDKGSQEKQGKSEGEGKPQGEGKPASQAKPEGQPRAAEKRPAGD 104
>gi|23503317 coiled-coil domain containing 96 [Homo sapiens]
Length = 555
Score = 30.4 bits (67), Expect = 1.7
Identities = 16/61 (26%), Positives = 26/61 (42%)
Query: 2 GPPGSSPTPEPPQKEVQKEGAADPKQVGEPSGQKTLDGSSRSAELVPQGEDDSEYLERDA 61
G PG P+P +E + GA +P Q +G + L+ + + EL E +
Sbjct: 85 GEPGRPAEPQPEPEEPAEVGAEEPAQPEPGAGPEELEAEAGAEELEQAAEGKEVRFQASL 144
Query: 62 P 62
P
Sbjct: 145 P 145
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 30.0 bits (66), Expect = 2.2
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 11/66 (16%)
Query: 2 GPPGSSPTPEPPQKEVQKEGAADPKQVGEPSGQKTLDGSSRSAELVPQGEDDSEYLERDA 61
G PG++P EPP + G P++ G PS ++ LVP G R
Sbjct: 81 GAPGAAP--EPPPAGRARPGGGGPQRPGPPSPRR---------PLVPAGPAPPAAKLRPP 129
Query: 62 PAGDAG 67
P G AG
Sbjct: 130 PEGSAG 135
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 30.0 bits (66), Expect = 2.2
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
Query: 2 GPPGSSPTPEPP-------QKEVQKEGAADPKQVGEPSGQKTLDGS 40
GPPGS P PP +KE+ +E P +G Q+T G+
Sbjct: 1700 GPPGSEPPRRPPPAPHDGDRKELPREQPLPPGPIGTERSQRTDRGT 1745
>gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2
preproprotein [Homo sapiens]
Length = 198
Score = 30.0 bits (66), Expect = 2.2
Identities = 23/69 (33%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
Query: 2 GPP--GSSPTPEPPQKEVQKEGAADP-KQVGEPSGQKTLDGSSRSAELVPQGEDDSEYLE 58
GPP G P PPQ + +G P K G P+ + S+RS PQG E
Sbjct: 99 GPPPQGGKPQGPPPQGGNKPQGPPPPGKPQGPPAQGGSKSQSARSPPGKPQGPPQQEGNN 158
Query: 59 RDAPAGDAG 67
P AG
Sbjct: 159 PQGPPPPAG 167
>gi|153070260 myristoylated alanine-rich protein kinase C substrate
[Homo sapiens]
Length = 332
Score = 29.6 bits (65), Expect = 2.9
Identities = 22/97 (22%), Positives = 43/97 (44%), Gaps = 6/97 (6%)
Query: 2 GPPGSSPTPEPPQKEVQKEGAADPK--QVGEPSGQKTLDGSSRSAELVPQGEDDSEYLER 59
G P ++ PE V+KE A+ + + G P+ + S+ S+ P+ ED +
Sbjct: 88 GEPAAAAAPEAGASPVEKEAPAEGEAAEPGSPTAAEGEAASAASSTSSPKAEDGA----T 143
Query: 60 DAPAGDAGRWLRVSFGLFGSVWVNDFSRAKKANKRGD 96
+P+ + + + F S ++ FS K + G+
Sbjct: 144 PSPSNETPKKKKKRFSFKKSFKLSGFSFKKNKKEAGE 180
>gi|4505419 nucleolar protein 3 [Homo sapiens]
Length = 208
Score = 29.6 bits (65), Expect = 2.9
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 2 GPPGS----SPTPEPPQKEVQKEGA--ADPKQVGEPSGQKTLDGSSR-SAELVPQGEDDS 54
GP GS S TPE P+ E++ E + A+P+ EP + + E P E +
Sbjct: 138 GPEGSEAVQSGTPEEPEPELEAEASKEAEPEPEPEPELEPEAEAEPEPELEPEPDPEPEP 197
Query: 55 EYLERD 60
++ ERD
Sbjct: 198 DFEERD 203
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 29.6 bits (65), Expect = 2.9
Identities = 21/66 (31%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Query: 3 PPGSSPTPEPPQKEVQKEGAADP-KQVGEPSGQKTLDGSSRSAELVPQGEDDSEYLERDA 61
PP P PPQ + +G P K G P+ + S+RS PQG E
Sbjct: 235 PPPGKPQGPPPQGGNKPQGPPPPGKPQGPPAQGGSKSQSARSPPGKPQGPPQQEGNNPQG 294
Query: 62 PAGDAG 67
P AG
Sbjct: 295 PPPPAG 300
>gi|29648305 zinc finger, CCHC domain containing 3 [Homo sapiens]
Length = 403
Score = 29.6 bits (65), Expect = 2.9
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Query: 5 GSSPTPEPPQKEVQKEGAADPKQVGEPSGQKTLDGSSRSAELVPQGEDDSEYLERDAPAG 64
G P PP++E + G +G P+G D + P G D + RD PAG
Sbjct: 52 GEFREPRPPRREEESGGGGGSAGLGGPAGLAAPD----LGDFPPAGRGDPKGRRRD-PAG 106
Query: 65 DA 66
+A
Sbjct: 107 EA 108
>gi|148922852 general transcription factor IIH, polypeptide 2C [Homo
sapiens]
Length = 395
Score = 29.3 bits (64), Expect = 3.8
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 217 GRPQHTQVYQKEQCPAGHQVMKEAFG-PEDGLQRLTWWCPQCQPQLSEEPEQCQ 269
G PQHT +Q M G E GL ++CPQC+ + E P +C+
Sbjct: 253 GFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCELPVECK 306
>gi|148922900 general transcription factor IIH, polypeptide 2B [Homo
sapiens]
Length = 395
Score = 29.3 bits (64), Expect = 3.8
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 217 GRPQHTQVYQKEQCPAGHQVMKEAFG-PEDGLQRLTWWCPQCQPQLSEEPEQCQ 269
G PQHT +Q M G E GL ++CPQC+ + E P +C+
Sbjct: 253 GFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCELPVECK 306
>gi|73476377 LBXCOR1 homolog [Homo sapiens]
Length = 921
Score = 29.3 bits (64), Expect = 3.8
Identities = 24/79 (30%), Positives = 30/79 (37%), Gaps = 2/79 (2%)
Query: 2 GPPGSSPTPEPPQKEVQKEGAADPKQVGEPSGQKTL--DGSSRSAELVPQGEDDSEYLER 59
GP G PT P +G A+ G P ++ L + R A ED ER
Sbjct: 644 GPDGEQPTGPPSATSSGADGPANSPDGGSPRPRRRLGPPPAGRPAFGDLAAEDLVRRPER 703
Query: 60 DAPAGDAGRWLRVSFGLFG 78
P+G G LR G G
Sbjct: 704 SPPSGGGGYELREPCGPLG 722
>gi|6681762 general transcription factor IIH, polypeptide 2, 44kD
subunit [Homo sapiens]
Length = 395
Score = 29.3 bits (64), Expect = 3.8
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 217 GRPQHTQVYQKEQCPAGHQVMKEAFG-PEDGLQRLTWWCPQCQPQLSEEPEQCQ 269
G PQHT +Q M G E GL ++CPQC+ + E P +C+
Sbjct: 253 GFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCELPVECK 306
>gi|109809737 general transcription factor IIH, polypeptide 2D [Homo
sapiens]
Length = 395
Score = 29.3 bits (64), Expect = 3.8
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 217 GRPQHTQVYQKEQCPAGHQVMKEAFG-PEDGLQRLTWWCPQCQPQLSEEPEQCQ 269
G PQHT +Q M G E GL ++CPQC+ + E P +C+
Sbjct: 253 GFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCELPVECK 306
>gi|13124883 HsKin17 protein [Homo sapiens]
Length = 393
Score = 29.3 bits (64), Expect = 3.8
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 246 GLQRLTWWCPQCQPQLSEE 264
GLQ+L W+C CQ Q +E
Sbjct: 20 GLQKLRWYCQMCQKQCRDE 38
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.134 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,014,293
Number of Sequences: 37866
Number of extensions: 665548
Number of successful extensions: 3130
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 3090
Number of HSP's gapped (non-prelim): 94
length of query: 271
length of database: 18,247,518
effective HSP length: 101
effective length of query: 170
effective length of database: 14,423,052
effective search space: 2451918840
effective search space used: 2451918840
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.