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Search of human proteins with 207028935
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|207028935 microfibrillar-associated protein 2 isoform b
precursor [Homo sapiens]
(182 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|207028935 microfibrillar-associated protein 2 isoform b precu... 390 e-109
gi|207028905 microfibrillar-associated protein 2 isoform b precu... 390 e-109
gi|4505157 microfibrillar-associated protein 2 isoform a precurs... 385 e-108
gi|9665259 microfibrillar-associated protein 2 isoform a precurs... 385 e-108
gi|4505089 microfibrillar associated protein 5 [Homo sapiens] 87 1e-17
gi|118600967 shroom family member 4 [Homo sapiens] 36 0.016
gi|122937283 6720455I24Rik homolog [Homo sapiens] 35 0.027
gi|163914392 glioma tumor suppressor candidate region gene 1 [Ho... 33 0.10
gi|116805330 small conductance calcium-activated potassium chann... 33 0.18
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 32 0.23
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 32 0.23
gi|54792138 helicase with zinc finger domain [Homo sapiens] 32 0.30
gi|66932986 filamin-binding LIM protein-1 isoform b [Homo sapiens] 32 0.39
gi|66932982 filamin-binding LIM protein-1 isoform a [Homo sapiens] 32 0.39
gi|221139761 zinc finger protein 853 [Homo sapiens] 31 0.67
gi|195972805 myocyte enhancer factor 2A isoform 4 [Homo sapiens] 31 0.67
gi|195972803 myocyte enhancer factor 2A isoform 3 [Homo sapiens] 31 0.67
gi|195972801 myocyte enhancer factor 2A isoform 2 [Homo sapiens] 31 0.67
gi|195972799 myocyte enhancer factor 2A isoform 1 [Homo sapiens] 31 0.67
gi|53692189 adipocyte enhancer binding protein 1 precursor [Homo... 31 0.67
gi|150170670 piccolo isoform 2 [Homo sapiens] 31 0.67
gi|150378539 piccolo isoform 1 [Homo sapiens] 31 0.67
gi|38348304 von Willebrand factor A domain containing 2 [Homo sa... 31 0.67
gi|225543461 tetratricopeptide repeat, ankyrin repeat and coiled... 30 0.88
gi|90903231 huntingtin [Homo sapiens] 30 0.88
gi|196114999 special AT-rich sequence binding protein 1 [Homo sa... 30 0.88
gi|4506791 special AT-rich sequence binding protein 1 [Homo sapi... 30 0.88
gi|93141033 PAX interacting protein 1 [Homo sapiens] 30 0.88
gi|221316616 extracellular matrix protein 1 isoform 2 precursor ... 30 1.1
gi|221316614 extracellular matrix protein 1 isoform 1 precursor ... 30 1.1
>gi|207028935 microfibrillar-associated protein 2 isoform b
precursor [Homo sapiens]
Length = 182
Score = 390 bits (1002), Expect = e-109
Identities = 182/182 (100%), Positives = 182/182 (100%)
Query: 1 MRAAYLFLLFLPGLLAQGQYDLDPLPPFPDHVQYTHYSDQIDNPDYYDYQEVTPRPSEEQ 60
MRAAYLFLLFLPGLLAQGQYDLDPLPPFPDHVQYTHYSDQIDNPDYYDYQEVTPRPSEEQ
Sbjct: 1 MRAAYLFLLFLPGLLAQGQYDLDPLPPFPDHVQYTHYSDQIDNPDYYDYQEVTPRPSEEQ 60
Query: 61 FQFQSQQQVQQEVIPAPTPEPGNAELEPTEPGPLDCREEQYPCTRLYSIHRPCKQCLNEV 120
FQFQSQQQVQQEVIPAPTPEPGNAELEPTEPGPLDCREEQYPCTRLYSIHRPCKQCLNEV
Sbjct: 61 FQFQSQQQVQQEVIPAPTPEPGNAELEPTEPGPLDCREEQYPCTRLYSIHRPCKQCLNEV 120
Query: 121 CFYSLRRVYVINKEICVRTVCAHEELLRADLCRDKFSKCGVMASSGLCQSVAASCARSCG 180
CFYSLRRVYVINKEICVRTVCAHEELLRADLCRDKFSKCGVMASSGLCQSVAASCARSCG
Sbjct: 121 CFYSLRRVYVINKEICVRTVCAHEELLRADLCRDKFSKCGVMASSGLCQSVAASCARSCG 180
Query: 181 SC 182
SC
Sbjct: 181 SC 182
>gi|207028905 microfibrillar-associated protein 2 isoform b
precursor [Homo sapiens]
Length = 182
Score = 390 bits (1002), Expect = e-109
Identities = 182/182 (100%), Positives = 182/182 (100%)
Query: 1 MRAAYLFLLFLPGLLAQGQYDLDPLPPFPDHVQYTHYSDQIDNPDYYDYQEVTPRPSEEQ 60
MRAAYLFLLFLPGLLAQGQYDLDPLPPFPDHVQYTHYSDQIDNPDYYDYQEVTPRPSEEQ
Sbjct: 1 MRAAYLFLLFLPGLLAQGQYDLDPLPPFPDHVQYTHYSDQIDNPDYYDYQEVTPRPSEEQ 60
Query: 61 FQFQSQQQVQQEVIPAPTPEPGNAELEPTEPGPLDCREEQYPCTRLYSIHRPCKQCLNEV 120
FQFQSQQQVQQEVIPAPTPEPGNAELEPTEPGPLDCREEQYPCTRLYSIHRPCKQCLNEV
Sbjct: 61 FQFQSQQQVQQEVIPAPTPEPGNAELEPTEPGPLDCREEQYPCTRLYSIHRPCKQCLNEV 120
Query: 121 CFYSLRRVYVINKEICVRTVCAHEELLRADLCRDKFSKCGVMASSGLCQSVAASCARSCG 180
CFYSLRRVYVINKEICVRTVCAHEELLRADLCRDKFSKCGVMASSGLCQSVAASCARSCG
Sbjct: 121 CFYSLRRVYVINKEICVRTVCAHEELLRADLCRDKFSKCGVMASSGLCQSVAASCARSCG 180
Query: 181 SC 182
SC
Sbjct: 181 SC 182
>gi|4505157 microfibrillar-associated protein 2 isoform a precursor
[Homo sapiens]
Length = 183
Score = 385 bits (990), Expect = e-108
Identities = 182/183 (99%), Positives = 182/183 (99%), Gaps = 1/183 (0%)
Query: 1 MRAAYLFLLFLP-GLLAQGQYDLDPLPPFPDHVQYTHYSDQIDNPDYYDYQEVTPRPSEE 59
MRAAYLFLLFLP GLLAQGQYDLDPLPPFPDHVQYTHYSDQIDNPDYYDYQEVTPRPSEE
Sbjct: 1 MRAAYLFLLFLPAGLLAQGQYDLDPLPPFPDHVQYTHYSDQIDNPDYYDYQEVTPRPSEE 60
Query: 60 QFQFQSQQQVQQEVIPAPTPEPGNAELEPTEPGPLDCREEQYPCTRLYSIHRPCKQCLNE 119
QFQFQSQQQVQQEVIPAPTPEPGNAELEPTEPGPLDCREEQYPCTRLYSIHRPCKQCLNE
Sbjct: 61 QFQFQSQQQVQQEVIPAPTPEPGNAELEPTEPGPLDCREEQYPCTRLYSIHRPCKQCLNE 120
Query: 120 VCFYSLRRVYVINKEICVRTVCAHEELLRADLCRDKFSKCGVMASSGLCQSVAASCARSC 179
VCFYSLRRVYVINKEICVRTVCAHEELLRADLCRDKFSKCGVMASSGLCQSVAASCARSC
Sbjct: 121 VCFYSLRRVYVINKEICVRTVCAHEELLRADLCRDKFSKCGVMASSGLCQSVAASCARSC 180
Query: 180 GSC 182
GSC
Sbjct: 181 GSC 183
>gi|9665259 microfibrillar-associated protein 2 isoform a precursor
[Homo sapiens]
Length = 183
Score = 385 bits (990), Expect = e-108
Identities = 182/183 (99%), Positives = 182/183 (99%), Gaps = 1/183 (0%)
Query: 1 MRAAYLFLLFLP-GLLAQGQYDLDPLPPFPDHVQYTHYSDQIDNPDYYDYQEVTPRPSEE 59
MRAAYLFLLFLP GLLAQGQYDLDPLPPFPDHVQYTHYSDQIDNPDYYDYQEVTPRPSEE
Sbjct: 1 MRAAYLFLLFLPAGLLAQGQYDLDPLPPFPDHVQYTHYSDQIDNPDYYDYQEVTPRPSEE 60
Query: 60 QFQFQSQQQVQQEVIPAPTPEPGNAELEPTEPGPLDCREEQYPCTRLYSIHRPCKQCLNE 119
QFQFQSQQQVQQEVIPAPTPEPGNAELEPTEPGPLDCREEQYPCTRLYSIHRPCKQCLNE
Sbjct: 61 QFQFQSQQQVQQEVIPAPTPEPGNAELEPTEPGPLDCREEQYPCTRLYSIHRPCKQCLNE 120
Query: 120 VCFYSLRRVYVINKEICVRTVCAHEELLRADLCRDKFSKCGVMASSGLCQSVAASCARSC 179
VCFYSLRRVYVINKEICVRTVCAHEELLRADLCRDKFSKCGVMASSGLCQSVAASCARSC
Sbjct: 121 VCFYSLRRVYVINKEICVRTVCAHEELLRADLCRDKFSKCGVMASSGLCQSVAASCARSC 180
Query: 180 GSC 182
GSC
Sbjct: 181 GSC 183
>gi|4505089 microfibrillar associated protein 5 [Homo sapiens]
Length = 173
Score = 86.7 bits (213), Expect = 1e-17
Identities = 33/59 (55%), Positives = 48/59 (81%)
Query: 95 DCREEQYPCTRLYSIHRPCKQCLNEVCFYSLRRVYVINKEICVRTVCAHEELLRADLCR 153
+C +E++ CTRLYS+HRP KQC++++CF SLRR+Y++NKEIC R VC E ++ +LCR
Sbjct: 83 ECWDEKFTCTRLYSVHRPVKQCIHQLCFTSLRRMYIVNKEICSRLVCKEHEAMKDELCR 141
>gi|118600967 shroom family member 4 [Homo sapiens]
Length = 1493
Score = 36.2 bits (82), Expect = 0.016
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 10/67 (14%)
Query: 93 PLDCREEQYPCTRLYS-------IHRPCKQCLNEVCFYSLRRVYVINKEICVRTVCAHEE 145
PL C + Y T YS +H PC C E+C L+R + N C C H +
Sbjct: 874 PLHCGDFDYHRTCSYSCSVQGALVHDPCIYCSGEICPALLKRNMMPN---CYNCRCHHHQ 930
Query: 146 LLRADLC 152
+R +C
Sbjct: 931 CIRCSVC 937
>gi|122937283 6720455I24Rik homolog [Homo sapiens]
Length = 1413
Score = 35.4 bits (80), Expect = 0.027
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 94 LDCREEQYPCTRLYSIHRPCKQCLNEVCFYSLRRVYVINKEICVRTVCAHEEL 146
L C + PCTRL+S + VC + +RVY ++++IC + C L
Sbjct: 1344 LACIKVSRPCTRLFSETKAFPVWEGGVCHHVYKRVYRVHQDICFKESCESTSL 1396
>gi|163914392 glioma tumor suppressor candidate region gene 1 [Homo
sapiens]
Length = 1560
Score = 33.5 bits (75), Expect = 0.10
Identities = 27/86 (31%), Positives = 34/86 (39%), Gaps = 9/86 (10%)
Query: 12 PGLLAQGQYDLDPLPPFPDHVQYTHYSDQIDNPDYYDYQEVTPRPSEEQFQFQSQQQVQQ 71
P L Q Q PLPP P H+ + S + + + P PS+ Q QF Q +
Sbjct: 860 PPLRPQSQPPEGPLPPAP-HLPPSSTSSAVASSSETSSRLPAPTPSDFQLQFPPSQGPHK 918
Query: 72 EVIPAPT----PEPGNAELEPTEPGP 93
P PT PEP P P P
Sbjct: 919 SPTPPPTLHLVPEPA----APPPPPP 940
>gi|116805330 small conductance calcium-activated potassium channel
protein 3 isoform a [Homo sapiens]
Length = 731
Score = 32.7 bits (73), Expect = 0.18
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 54 PRPSEEQFQFQSQQQVQQEVIPAPTPEPGNAELEPTEPGPL 94
P+P + Q Q Q QQQ QQ+ P P + + +P PG L
Sbjct: 61 PQPPQLQQQQQQQQQQQQQQPPHPLSQLAQLQSQPVHPGLL 101
Score = 30.4 bits (67), Expect = 0.88
Identities = 17/47 (36%), Positives = 22/47 (46%)
Query: 54 PRPSEEQFQFQSQQQVQQEVIPAPTPEPGNAELEPTEPGPLDCREEQ 100
P +EQ Q Q QQQ QQ PAP P +P P +++Q
Sbjct: 24 PSSGDEQQQQQQQQQQQQPPPPAPPAAPQQPLGPSLQPQPPQLQQQQ 70
Score = 28.9 bits (63), Expect = 2.6
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
Query: 54 PRPSEEQFQFQSQQQVQQEVIPAPTP-----EPGNAELEPTEP 91
P PS Q Q QQQ QQ+ P P P +P L+P P
Sbjct: 22 PCPSSGDEQQQQQQQQQQQQPPPPAPPAAPQQPLGPSLQPQPP 64
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
[Homo sapiens]
Length = 2231
Score = 32.3 bits (72), Expect = 0.23
Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 9/69 (13%)
Query: 12 PGLLAQGQYDLDPLPPFPDHVQYTHYSDQIDNPDYYDYQEVTPR--------PSEEQFQF 63
PG +A QY +PP + Y Q P YY Q P PS+ Q ++
Sbjct: 509 PGAMAGMQYPQQQMPPQYGQQGVSGYCQQGQQP-YYSQQPQPPHLPPQAQYLPSQSQQRY 567
Query: 64 QSQQQVQQE 72
Q QQ + QE
Sbjct: 568 QPQQDMSQE 576
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
[Homo sapiens]
Length = 2178
Score = 32.3 bits (72), Expect = 0.23
Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 9/69 (13%)
Query: 12 PGLLAQGQYDLDPLPPFPDHVQYTHYSDQIDNPDYYDYQEVTPR--------PSEEQFQF 63
PG +A QY +PP + Y Q P YY Q P PS+ Q ++
Sbjct: 509 PGAMAGMQYPQQQMPPQYGQQGVSGYCQQGQQP-YYSQQPQPPHLPPQAQYLPSQSQQRY 567
Query: 64 QSQQQVQQE 72
Q QQ + QE
Sbjct: 568 QPQQDMSQE 576
>gi|54792138 helicase with zinc finger domain [Homo sapiens]
Length = 1942
Score = 32.0 bits (71), Expect = 0.30
Identities = 32/102 (31%), Positives = 44/102 (43%), Gaps = 13/102 (12%)
Query: 24 PLPPFPDHVQYTHYSDQIDN-PDYYDYQEVTPRPSE-EQFQFQSQQQVQQ---EVIPAPT 78
P PPFP Q+T + Q +N P+ ++ P+P++ Q Q Q QQ QQ ++ PA
Sbjct: 1367 PRPPFPIPQQHTLLNQQQNNLPE--QPNQIPPQPNQVVQQQSQLNQQPQQPPPQLSPAYQ 1424
Query: 79 PEPGNAEL------EPTEPGPLDCREEQYPCTRLYSIHRPCK 114
P NA P P EQ P L H P +
Sbjct: 1425 AGPNNAFFNSAVAHRPQSPPAEAVIPEQQPPPMLQEGHSPLR 1466
>gi|66932986 filamin-binding LIM protein-1 isoform b [Homo sapiens]
Length = 374
Score = 31.6 bits (70), Expect = 0.39
Identities = 38/166 (22%), Positives = 55/166 (33%), Gaps = 23/166 (13%)
Query: 21 DLDPLPPFPDHVQYTHYSDQIDNPDYYDYQEVTPRPSEEQFQFQSQQQVQQEVIPAPTPE 80
DLD LPP P P +E P P +Q + P P P
Sbjct: 100 DLDLLPPPPP-----------PPPVLLPSEEEAPAPMGASLIADLEQL---HLSPPPPPP 145
Query: 81 PGNAELEPTEPGPLDCREEQYPCTRLYSIHRPCKQCLNEVCFYSLRRVYVINKEICVRTV 140
AE +PGPL EE+ P + K ++C + + V +E+ V +
Sbjct: 146 QAPAEGPSVQPGPLRPMEEELPPPPAEPVE---KGASTDICAFCHKT--VSPRELAVEAM 200
Query: 141 CA--HEELLRADLCRDKFSKCGVMASSG--LCQSVAASCARSCGSC 182
H + CR + + G LC+ CG C
Sbjct: 201 KRQYHAQCFTCRTCRRQLAGQSFYQKDGRPLCEPCYQDTLERCGKC 246
>gi|66932982 filamin-binding LIM protein-1 isoform a [Homo sapiens]
Length = 373
Score = 31.6 bits (70), Expect = 0.39
Identities = 38/166 (22%), Positives = 55/166 (33%), Gaps = 23/166 (13%)
Query: 21 DLDPLPPFPDHVQYTHYSDQIDNPDYYDYQEVTPRPSEEQFQFQSQQQVQQEVIPAPTPE 80
DLD LPP P P +E P P +Q + P P P
Sbjct: 100 DLDLLPPPPP-----------PPPVLLPSEEEAPAPMGASLIADLEQL---HLSPPPPPP 145
Query: 81 PGNAELEPTEPGPLDCREEQYPCTRLYSIHRPCKQCLNEVCFYSLRRVYVINKEICVRTV 140
AE +PGPL EE+ P + K ++C + + V +E+ V +
Sbjct: 146 QAPAEGPSVQPGPLRPMEEELPPPPAEPVE---KGASTDICAFCHKT--VSPRELAVEAM 200
Query: 141 CA--HEELLRADLCRDKFSKCGVMASSG--LCQSVAASCARSCGSC 182
H + CR + + G LC+ CG C
Sbjct: 201 KRQYHAQCFTCRTCRRQLAGQSFYQKDGRPLCEPCYQDTLERCGKC 246
>gi|221139761 zinc finger protein 853 [Homo sapiens]
Length = 659
Score = 30.8 bits (68), Expect = 0.67
Identities = 17/51 (33%), Positives = 25/51 (49%)
Query: 50 QEVTPRPSEEQFQFQSQQQVQQEVIPAPTPEPGNAELEPTEPGPLDCREEQ 100
QE + ++Q Q Q+Q+QQ+ + P EP E E P+D EQ
Sbjct: 283 QEQLQQQQQQQLLQQQQEQLQQQQLQPPPLEPEEEEEVELELMPVDLGSEQ 333
>gi|195972805 myocyte enhancer factor 2A isoform 4 [Homo sapiens]
Length = 429
Score = 30.8 bits (68), Expect = 0.67
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
Query: 55 RPSEEQFQFQSQQQVQQEVIPAPTPEPGNAELEPTEPGP 93
R + FQ Q QQQ QQ+ P P P+P +P +P P
Sbjct: 335 RMTPSGFQQQQQQQQQQQPPPPPQPQP-----QPPQPQP 368
>gi|195972803 myocyte enhancer factor 2A isoform 3 [Homo sapiens]
Length = 437
Score = 30.8 bits (68), Expect = 0.67
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
Query: 55 RPSEEQFQFQSQQQVQQEVIPAPTPEPGNAELEPTEPGP 93
R + FQ Q QQQ QQ+ P P P+P +P +P P
Sbjct: 343 RMTPSGFQQQQQQQQQQQPPPPPQPQP-----QPPQPQP 376
>gi|195972801 myocyte enhancer factor 2A isoform 2 [Homo sapiens]
Length = 497
Score = 30.8 bits (68), Expect = 0.67
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
Query: 55 RPSEEQFQFQSQQQVQQEVIPAPTPEPGNAELEPTEPGP 93
R + FQ Q QQQ QQ+ P P P+P +P +P P
Sbjct: 403 RMTPSGFQQQQQQQQQQQPPPPPQPQP-----QPPQPQP 436
>gi|195972799 myocyte enhancer factor 2A isoform 1 [Homo sapiens]
Length = 499
Score = 30.8 bits (68), Expect = 0.67
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
Query: 55 RPSEEQFQFQSQQQVQQEVIPAPTPEPGNAELEPTEPGP 93
R + FQ Q QQQ QQ+ P P P+P +P +P P
Sbjct: 405 RMTPSGFQQQQQQQQQQQPPPPPQPQP-----QPPQPQP 438
>gi|53692189 adipocyte enhancer binding protein 1 precursor [Homo
sapiens]
Length = 1158
Score = 30.8 bits (68), Expect = 0.67
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 37 YSDQIDNPDYYDYQEV------TPRPSEEQFQFQSQQQVQQEVIPAPTPE 80
Y+DQI+ DY D++ + P PS + + + +E PAP PE
Sbjct: 235 YNDQIEREDYEDFEYIRRQKQPRPPPSRRRRPERVWPEPPEEKAPAPAPE 284
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 30.8 bits (68), Expect = 0.67
Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 16/88 (18%)
Query: 7 FLLFLPGLLAQGQYDLDPLPPFPDHVQYTHYSDQIDN--PDYYD-----------YQEVT 53
F F+P Q Q + +PP + QY + S + P Y +Q+V+
Sbjct: 3864 FSQFIP---PQTQTESQLVPPTSPYTQYQYSSPALPTQAPTSYTQQSHFEQQTLYHQQVS 3920
Query: 54 PRPSEEQFQFQSQQQVQQEVIPAPTPEP 81
P ++ FQ + +V P PTP+P
Sbjct: 3921 PYQTQPTFQAVATMSFTPQVQPTPTPQP 3948
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 30.8 bits (68), Expect = 0.67
Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 16/88 (18%)
Query: 7 FLLFLPGLLAQGQYDLDPLPPFPDHVQYTHYSDQIDN--PDYYD-----------YQEVT 53
F F+P Q Q + +PP + QY + S + P Y +Q+V+
Sbjct: 3864 FSQFIP---PQTQTESQLVPPTSPYTQYQYSSPALPTQAPTSYTQQSHFEQQTLYHQQVS 3920
Query: 54 PRPSEEQFQFQSQQQVQQEVIPAPTPEP 81
P ++ FQ + +V P PTP+P
Sbjct: 3921 PYQTQPTFQAVATMSFTPQVQPTPTPQP 3948
>gi|38348304 von Willebrand factor A domain containing 2 [Homo
sapiens]
Length = 725
Score = 30.8 bits (68), Expect = 0.67
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 15/62 (24%)
Query: 95 DCREEQYPC-------TRLYSIHRPCKQ-------CLNEVC-FYSLRRVYVINKEICVRT 139
DCR E +PC R ++ + PC + L C FYS +RV++ + C RT
Sbjct: 234 DCRVEAHPCEHRTLEMVREFAGNAPCWRGSRRTLAVLAAHCPFYSWKRVFLTHPATCYRT 293
Query: 140 VC 141
C
Sbjct: 294 TC 295
>gi|225543461 tetratricopeptide repeat, ankyrin repeat and coiled-coil
containing 1 isoform 1 [Homo sapiens]
Length = 1861
Score = 30.4 bits (67), Expect = 0.88
Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 44 PDYYDYQEVTPRPSEEQFQFQ-SQQQVQQEVIPAPTPEPGNAELEPTEPGPLD 95
P + + + R EE Q Q SQQQ QQ +PAP + N E PT PG D
Sbjct: 1401 PTNQEVKRLLARVEEECKQLQRSQQQKQQGPLPAPLNDSENEEDTPT-PGLSD 1452
>gi|90903231 huntingtin [Homo sapiens]
Length = 3144
Score = 30.4 bits (67), Expect = 0.88
Identities = 16/45 (35%), Positives = 21/45 (46%)
Query: 50 QEVTPRPSEEQFQFQSQQQVQQEVIPAPTPEPGNAELEPTEPGPL 94
Q+ + ++Q Q Q QQQ QQ P P P P P + PL
Sbjct: 19 QQQQQQQQQQQQQQQQQQQQQQPPPPPPPPPPPQLPQPPPQAQPL 63
Score = 29.6 bits (65), Expect = 1.5
Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 10/77 (12%)
Query: 49 YQEVTPRPSEEQFQFQSQQQVQQEVIPAPTPEP----------GNAELEPTEPGPLDCRE 98
+Q+ + ++Q Q Q QQQ QQ+ P P P P L +P P
Sbjct: 17 FQQQQQQQQQQQQQQQQQQQQQQQPPPPPPPPPPPQLPQPPPQAQPLLPQPQPPPPPPPP 76
Query: 99 EQYPCTRLYSIHRPCKQ 115
P +HRP K+
Sbjct: 77 PPGPAVAEEPLHRPKKE 93
>gi|196114999 special AT-rich sequence binding protein 1 [Homo
sapiens]
Length = 763
Score = 30.4 bits (67), Expect = 0.88
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 58 EEQFQFQSQQQVQQEVIPAPTPE------PGNAELEPTEPGPLDCREEQYPCTR 105
++Q Q Q QQQ QQ+ P P P+ P +PT P + EE TR
Sbjct: 593 QQQQQQQQQQQQQQQAPPPPQPQQQPQTGPRLPPRQPTVASPAESDEENRQKTR 646
>gi|4506791 special AT-rich sequence binding protein 1 [Homo
sapiens]
Length = 763
Score = 30.4 bits (67), Expect = 0.88
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 58 EEQFQFQSQQQVQQEVIPAPTPE------PGNAELEPTEPGPLDCREEQYPCTR 105
++Q Q Q QQQ QQ+ P P P+ P +PT P + EE TR
Sbjct: 593 QQQQQQQQQQQQQQQAPPPPQPQQQPQTGPRLPPRQPTVASPAESDEENRQKTR 646
>gi|93141033 PAX interacting protein 1 [Homo sapiens]
Length = 1069
Score = 30.4 bits (67), Expect = 0.88
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Query: 60 QFQFQSQQQVQQEVIPAPTPEPGNAELEPTE---PGPLDCREEQYPCTRLY---SIHRPC 113
Q Q Q QQQ+ Q+ P P P + + + + P ++ Q+P +L+ +HRP
Sbjct: 426 QLQQQQQQQISQQPYPQQPPHPFSQQQQQQQQAHPHQFSQQQLQFPQQQLHPPQQLHRPQ 485
Query: 114 KQ 115
+Q
Sbjct: 486 QQ 487
>gi|221316616 extracellular matrix protein 1 isoform 2 precursor
[Homo sapiens]
Length = 415
Score = 30.0 bits (66), Expect = 1.1
Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 14/97 (14%)
Query: 20 YDLDPLPPFPDHVQYTHYSDQIDNPDYYDYQEVTPRPSEEQFQFQSQQQVQQEVIPAPTP 79
Y P PP + H P + +V P PS+E Q Q++++PA P
Sbjct: 43 YAAPPSPPLSRSLPMDHPDSSQHGPPFEGQSQVQPPPSQEATPLQ-----QEKLLPAQLP 97
Query: 80 EPGNAELEPTEPGPLDCREEQYPCTR-LYSIHRPCKQ 115
AE E P P +E P + L S+ P +Q
Sbjct: 98 ----AEKEVGPPLP----QEAVPLQKELPSLQHPNEQ 126
>gi|221316614 extracellular matrix protein 1 isoform 1 precursor
[Homo sapiens]
Length = 540
Score = 30.0 bits (66), Expect = 1.1
Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 14/97 (14%)
Query: 20 YDLDPLPPFPDHVQYTHYSDQIDNPDYYDYQEVTPRPSEEQFQFQSQQQVQQEVIPAPTP 79
Y P PP + H P + +V P PS+E Q Q++++PA P
Sbjct: 43 YAAPPSPPLSRSLPMDHPDSSQHGPPFEGQSQVQPPPSQEATPLQ-----QEKLLPAQLP 97
Query: 80 EPGNAELEPTEPGPLDCREEQYPCTR-LYSIHRPCKQ 115
AE E P P +E P + L S+ P +Q
Sbjct: 98 ----AEKEVGPPLP----QEAVPLQKELPSLQHPNEQ 126
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.138 0.444
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,164,037
Number of Sequences: 37866
Number of extensions: 524836
Number of successful extensions: 3240
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 80
Number of HSP's that attempted gapping in prelim test: 3013
Number of HSP's gapped (non-prelim): 251
length of query: 182
length of database: 18,247,518
effective HSP length: 96
effective length of query: 86
effective length of database: 14,612,382
effective search space: 1256664852
effective search space used: 1256664852
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.