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Search of human proteins with 206597481
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|206597481 achaete-scute complex-like 4 [Homo sapiens]
(173 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|206597481 achaete-scute complex-like 4 [Homo sapiens] 355 1e-98
gi|239752994 PREDICTED: achaete-scute complex homolog 5 (Drosoph... 109 1e-24
gi|239747548 PREDICTED: achaete-scute complex homolog 5 (Drosoph... 109 1e-24
gi|239741422 PREDICTED: achaete-scute complex homolog 5 [Homo sa... 109 1e-24
gi|10190680 ASCL3 [Homo sapiens] 96 2e-20
gi|55743094 achaete-scute complex homolog 1 [Homo sapiens] 79 3e-15
gi|4885665 achaete-scute complex homolog-like 2 [Homo sapiens] 77 7e-15
gi|30039710 pancreas specific transcription factor, 1a [Homo sap... 59 3e-09
gi|148922889 scleraxis homolog B [Homo sapiens] 55 4e-08
gi|186972126 scleraxis homolog A [Homo sapiens] 55 4e-08
gi|116805332 musculin [Homo sapiens] 54 7e-08
gi|12545384 basic helix-loop-helix transcription factor HAND2 [H... 53 2e-07
gi|29126247 basic helix-loop-helix family, member a15 [Homo sapi... 52 2e-07
gi|116517330 factor in the germline alpha [Homo sapiens] 52 2e-07
gi|34147558 lymphoblastic leukemia derived sequence 1 [Homo sapi... 52 2e-07
gi|48255909 basic helix-loop-helix transcription factor 15 [Homo... 52 3e-07
gi|4758506 basic helix-loop-helix transcription factor HAND1 [Ho... 51 4e-07
gi|38455396 neurogenin 1 [Homo sapiens] 51 6e-07
gi|4885075 atonal homolog 1 [Homo sapiens] 51 6e-07
gi|23097242 nephew of atonal 3 [Homo sapiens] 50 1e-06
gi|4885619 T-cell acute lymphocytic leukemia 2 [Homo sapiens] 49 2e-06
gi|38202237 transcription factor 21 [Homo sapiens] 49 2e-06
gi|38202239 transcription factor 21 [Homo sapiens] 49 2e-06
gi|4507363 T-cell acute lymphocytic leukemia 1 [Homo sapiens] 47 6e-06
gi|23111009 myogenic differentiation 1 [Homo sapiens] 47 1e-05
gi|161484632 nescient helix loop helix 2 [Homo sapiens] 46 1e-05
gi|5031945 nescient helix loop helix 2 [Homo sapiens] 46 1e-05
gi|31077092 neurogenin 2 [Homo sapiens] 46 1e-05
gi|5031943 nescient helix loop helix 1 [Homo sapiens] 46 1e-05
gi|21553337 atonal homolog 7 [Homo sapiens] 46 2e-05
>gi|206597481 achaete-scute complex-like 4 [Homo sapiens]
Length = 173
Score = 355 bits (910), Expect = 1e-98
Identities = 173/173 (100%), Positives = 173/173 (100%)
Query: 1 MMETRKPAERLALPYSLRTAPLGVPGTLPGLPRRDPLRVALRLDAACWEWARSGCARGWQ 60
MMETRKPAERLALPYSLRTAPLGVPGTLPGLPRRDPLRVALRLDAACWEWARSGCARGWQ
Sbjct: 1 MMETRKPAERLALPYSLRTAPLGVPGTLPGLPRRDPLRVALRLDAACWEWARSGCARGWQ 60
Query: 61 YLPVPLDSAFEPAFLRKRNERERQRVRCVNEGYARLRDHLPRELADKRLSKVETLRAAID 120
YLPVPLDSAFEPAFLRKRNERERQRVRCVNEGYARLRDHLPRELADKRLSKVETLRAAID
Sbjct: 61 YLPVPLDSAFEPAFLRKRNERERQRVRCVNEGYARLRDHLPRELADKRLSKVETLRAAID 120
Query: 121 YIKHLQELLERQAWGLEGAAGAVPQRRAECNSDGESKASSAPSPSSEPEEGGS 173
YIKHLQELLERQAWGLEGAAGAVPQRRAECNSDGESKASSAPSPSSEPEEGGS
Sbjct: 121 YIKHLQELLERQAWGLEGAAGAVPQRRAECNSDGESKASSAPSPSSEPEEGGS 173
>gi|239752994 PREDICTED: achaete-scute complex homolog 5
(Drosophila) [Homo sapiens]
Length = 313
Score = 109 bits (272), Expect = 1e-24
Identities = 66/122 (54%), Positives = 77/122 (63%), Gaps = 16/122 (13%)
Query: 61 YLPVP-----LDSAFEPAFLRKRNERERQRVRCVNEGYARLRDHLPRELADKRLSKVETL 115
Y+P P + FEPAF++KRNERERQRV+CVNEGYARLR HLP LA+KRLSKVETL
Sbjct: 173 YVPFPGAFGVYEYPFEPAFIQKRNERERQRVKCVNEGYARLRGHLPGALAEKRLSKVETL 232
Query: 116 RAAIDYIKHLQELLERQAWG-----LEGAAGAVP------QRRAECNSDGESKASSAPSP 164
RAAI YIK+LQELL G G G P R + DGE++A S+ P
Sbjct: 233 RAAIRYIKYLQELLSSAPDGSTPPASRGLPGTGPCPAPPATPRPDRPGDGEARAPSSLVP 292
Query: 165 SS 166
S
Sbjct: 293 ES 294
>gi|239747548 PREDICTED: achaete-scute complex homolog 5
(Drosophila) [Homo sapiens]
Length = 313
Score = 109 bits (272), Expect = 1e-24
Identities = 66/122 (54%), Positives = 77/122 (63%), Gaps = 16/122 (13%)
Query: 61 YLPVP-----LDSAFEPAFLRKRNERERQRVRCVNEGYARLRDHLPRELADKRLSKVETL 115
Y+P P + FEPAF++KRNERERQRV+CVNEGYARLR HLP LA+KRLSKVETL
Sbjct: 173 YVPFPGAFGVYEYPFEPAFIQKRNERERQRVKCVNEGYARLRGHLPGALAEKRLSKVETL 232
Query: 116 RAAIDYIKHLQELLERQAWG-----LEGAAGAVP------QRRAECNSDGESKASSAPSP 164
RAAI YIK+LQELL G G G P R + DGE++A S+ P
Sbjct: 233 RAAIRYIKYLQELLSSAPDGSTPPASRGLPGTGPCPAPPATPRPDRPGDGEARAPSSLVP 292
Query: 165 SS 166
S
Sbjct: 293 ES 294
>gi|239741422 PREDICTED: achaete-scute complex homolog 5 [Homo
sapiens]
Length = 313
Score = 109 bits (272), Expect = 1e-24
Identities = 66/122 (54%), Positives = 77/122 (63%), Gaps = 16/122 (13%)
Query: 61 YLPVP-----LDSAFEPAFLRKRNERERQRVRCVNEGYARLRDHLPRELADKRLSKVETL 115
Y+P P + FEPAF++KRNERERQRV+CVNEGYARLR HLP LA+KRLSKVETL
Sbjct: 173 YVPFPGAFGVYEYPFEPAFIQKRNERERQRVKCVNEGYARLRGHLPGALAEKRLSKVETL 232
Query: 116 RAAIDYIKHLQELLERQAWG-----LEGAAGAVP------QRRAECNSDGESKASSAPSP 164
RAAI YIK+LQELL G G G P R + DGE++A S+ P
Sbjct: 233 RAAIRYIKYLQELLSSAPDGSTPPASRGLPGTGPCPAPPATPRPDRPGDGEARAPSSLVP 292
Query: 165 SS 166
S
Sbjct: 293 ES 294
>gi|10190680 ASCL3 [Homo sapiens]
Length = 181
Score = 95.5 bits (236), Expect = 2e-20
Identities = 46/61 (75%), Positives = 52/61 (85%)
Query: 69 AFEPAFLRKRNERERQRVRCVNEGYARLRDHLPRELADKRLSKVETLRAAIDYIKHLQEL 128
++ PAF RKRNERERQRV+CVNEGYA+LR HLP E +KRLSKVETLRAAI YI +LQ L
Sbjct: 89 SYGPAFTRKRNERERQRVKCVNEGYAQLRHHLPEEYLEKRLSKVETLRAAIKYINYLQSL 148
Query: 129 L 129
L
Sbjct: 149 L 149
>gi|55743094 achaete-scute complex homolog 1 [Homo sapiens]
Length = 236
Score = 78.6 bits (192), Expect = 3e-15
Identities = 43/102 (42%), Positives = 65/102 (63%), Gaps = 1/102 (0%)
Query: 71 EPAFLRKRNERERQRVRCVNEGYARLRDHLPRELADKRLSKVETLRAAIDYIKHLQELL- 129
+PA + +RNERER RV+ VN G+A LR+H+P A+K++SKVETLR+A++YI+ LQ+LL
Sbjct: 116 QPAAVARRNERERNRVKLVNLGFATLREHVPNGAANKKMSKVETLRSAVEYIRALQQLLD 175
Query: 130 ERQAWGLEGAAGAVPQRRAECNSDGESKASSAPSPSSEPEEG 171
E A AG + + S+ + + +P S +EG
Sbjct: 176 EHDAVSAAFQAGVLSPTISPNYSNDLNSMAGSPVSSYSSDEG 217
>gi|4885665 achaete-scute complex homolog-like 2 [Homo sapiens]
Length = 193
Score = 77.0 bits (188), Expect = 7e-15
Identities = 64/156 (41%), Positives = 83/156 (53%), Gaps = 12/156 (7%)
Query: 26 GTLP-GLPRRDPLRV--ALRLDAACWEWARSGCARGWQYLPVPLDSAFEPAFLRKRNERE 82
GTLP P P+ V A R A E R C+R + P ++ A + +RNERE
Sbjct: 4 GTLPRSAPPAPPVPVGCAARRRPASPELLR--CSR--RRRPATAETGGGAAAVARRNERE 59
Query: 83 RQRVRCVNEGYARLRDHLPRELADKRLSKVETLRAAIDYIKHLQELL-ERQAWGLEGAAG 141
R RV+ VN G+ LR H+P A K+LSKVETLR+A++YI+ LQ LL E A A G
Sbjct: 60 RNRVKLVNLGFQALRQHVPHGGASKKLSKVETLRSAVEYIRALQRLLAEHDAVRNALAGG 119
Query: 142 AVPQR---RAECNSDGESKASSAPS-PSSEPEEGGS 173
PQ A G + +++PS SS P GGS
Sbjct: 120 LRPQAVRPSAPRGPPGTTPVAASPSRASSSPGRGGS 155
>gi|30039710 pancreas specific transcription factor, 1a [Homo
sapiens]
Length = 328
Score = 58.5 bits (140), Expect = 3e-09
Identities = 34/92 (36%), Positives = 48/92 (52%), Gaps = 7/92 (7%)
Query: 79 NERERQRVRCVNEGYARLRDHLPRELADKRLSKVETLRAAIDYIKHLQELLERQAWGLEG 138
N RER+R++ +N+ + LR H+P +KRLSKV+TLR AI YI L EL++ G
Sbjct: 169 NVRERRRMQSINDAFEGLRSHIPTLPYEKRLSKVDTLRLAIGYINFLSELVQADLPLRGG 228
Query: 139 AAGAVPQRRAECNSDGESKASSAPSPSSEPEE 170
AG C G SP S+ ++
Sbjct: 229 GAGG-------CGGPGGGGRLGGDSPGSQAQK 253
>gi|148922889 scleraxis homolog B [Homo sapiens]
Length = 201
Score = 54.7 bits (130), Expect = 4e-08
Identities = 28/59 (47%), Positives = 34/59 (57%)
Query: 71 EPAFLRKRNERERQRVRCVNEGYARLRDHLPRELADKRLSKVETLRAAIDYIKHLQELL 129
EP N RER R VN + LR +P E AD++LSK+ETLR A YI HL +L
Sbjct: 73 EPRQRHTANARERDRTNSVNTAFTALRTLIPTEPADRKLSKIETLRLASSYISHLGNVL 131
>gi|186972126 scleraxis homolog A [Homo sapiens]
Length = 201
Score = 54.7 bits (130), Expect = 4e-08
Identities = 28/59 (47%), Positives = 34/59 (57%)
Query: 71 EPAFLRKRNERERQRVRCVNEGYARLRDHLPRELADKRLSKVETLRAAIDYIKHLQELL 129
EP N RER R VN + LR +P E AD++LSK+ETLR A YI HL +L
Sbjct: 73 EPRQRHTANARERDRTNSVNTAFTALRTLIPTEPADRKLSKIETLRLASSYISHLGNVL 131
>gi|116805332 musculin [Homo sapiens]
Length = 206
Score = 53.9 bits (128), Expect = 7e-08
Identities = 40/116 (34%), Positives = 59/116 (50%), Gaps = 11/116 (9%)
Query: 22 LGVPGTLPGLPRRDPLRVALRLDAACWEWARSGCARGWQYLPVPLDSAFEPAFLRKRNE- 80
LG G+ G R+ P RVA A G A G P+P + +RN
Sbjct: 61 LGTAGSAEGCKRKRP-RVAGGGGAG-------GSAGGGGKKPLPAKGSAAECKQSQRNAA 112
Query: 81 --RERQRVRCVNEGYARLRDHLPRELADKRLSKVETLRAAIDYIKHLQELLERQAW 134
RER R+R +++ ++RL+ LP D +LSK++TLR A YI HL++LL+ +
Sbjct: 113 NARERARMRVLSKAFSRLKTSLPWVPPDTKLSKLDTLRLASSYIAHLRQLLQEDRY 168
>gi|12545384 basic helix-loop-helix transcription factor HAND2 [Homo
sapiens]
Length = 217
Score = 52.8 bits (125), Expect = 2e-07
Identities = 26/79 (32%), Positives = 43/79 (54%)
Query: 79 NERERQRVRCVNEGYARLRDHLPRELADKRLSKVETLRAAIDYIKHLQELLERQAWGLEG 138
N +ER+R + +N +A LR+ +P AD +LSK++TLR A YI +L +LL + E
Sbjct: 105 NRKERRRTQSINSAFAELRECIPNVPADTKLSKIKTLRLATSYIAYLMDLLAKDDQNGEA 164
Query: 139 AAGAVPQRRAECNSDGESK 157
A ++ + + K
Sbjct: 165 EAFKAEIKKTDVKEEKRKK 183
>gi|29126247 basic helix-loop-helix family, member a15 [Homo
sapiens]
Length = 189
Score = 52.4 bits (124), Expect = 2e-07
Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 79 NERERQRVRCVNEGYARLRDHLPRELADKRLSKVETLRAAIDYIKHL-QELLERQAWGLE 137
NERERQR+ +N + LR+ +P ADK+LSK+ETL A +YIK L +L + L
Sbjct: 81 NERERQRMHKLNNAFQALREVIPHVRADKKLSKIETLTLAKNYIKSLTATILTMSSSRLP 140
Query: 138 GAAGAVPQ 145
G G P+
Sbjct: 141 GLEGPGPK 148
>gi|116517330 factor in the germline alpha [Homo sapiens]
Length = 219
Score = 52.4 bits (124), Expect = 2e-07
Identities = 45/150 (30%), Positives = 71/150 (47%), Gaps = 19/150 (12%)
Query: 21 PLGVPGTLPGLPRRDPLRVALR--------LDAAC-WEWARSGCARGWQYLPVPLDSAFE 71
P P L G P+ + L LR L A C + SG + L + L+
Sbjct: 10 PRAAPPALLGTPQAEVLEDVLREQFGPLPQLAAVCRLKRLPSGGYSSTENLQLVLERR-- 67
Query: 72 PAFLRKRNERERQRVRCVNEGYARLRDHLPRELADKRLSKVETLRAAIDYIKHLQELLER 131
R N +ER+R++ +N G+ARL+ +P ++ SKV+ L+ A +YI+ L +LLE
Sbjct: 68 ----RVANAKERERIKNLNRGFARLKALVPFLPQSRKPSKVDILKGATEYIQVLSDLLE- 122
Query: 132 QAWGLEGAAGAVPQRRAECNSDGESKASSA 161
G + + P ++ N+ ES SSA
Sbjct: 123 ---GAKDSKKQDPDEQSYSNNSSESHTSSA 149
>gi|34147558 lymphoblastic leukemia derived sequence 1 [Homo
sapiens]
Length = 280
Score = 52.4 bits (124), Expect = 2e-07
Identities = 39/105 (37%), Positives = 49/105 (46%), Gaps = 16/105 (15%)
Query: 79 NERERQRVRCVNEGYARLRDHLPRELADKRLSKVETLRAAIDYIKHLQELLERQAWGLEG 138
N RER R + VN +A LR LP D++LSK E LR A+ YI L LL QA L
Sbjct: 156 NSRERWRQQNVNGAFAELRKLLPTHPPDRKLSKNEVLRLAMKYIGFLVRLLRDQAAAL-- 213
Query: 139 AAGAVPQ--------------RRAECNSDGESKASSAPSPSSEPE 169
AAG P R E+ A S P+P ++P+
Sbjct: 214 AAGPTPPGPRKRPVHRVPDDGARRGSGRRAEAAARSQPAPPADPD 258
>gi|48255909 basic helix-loop-helix transcription factor 15 [Homo
sapiens]
Length = 199
Score = 52.0 bits (123), Expect = 3e-07
Identities = 25/51 (49%), Positives = 32/51 (62%)
Query: 79 NERERQRVRCVNEGYARLRDHLPRELADKRLSKVETLRAAIDYIKHLQELL 129
N RER R + VN + LR +P E D++LSK+ETLR A YI HL +L
Sbjct: 78 NARERDRTQSVNTAFTALRTLIPTEPVDRKLSKIETLRLASSYIAHLANVL 128
>gi|4758506 basic helix-loop-helix transcription factor HAND1 [Homo
sapiens]
Length = 215
Score = 51.2 bits (121), Expect = 4e-07
Identities = 25/78 (32%), Positives = 45/78 (57%)
Query: 80 ERERQRVRCVNEGYARLRDHLPRELADKRLSKVETLRAAIDYIKHLQELLERQAWGLEGA 139
++ER+R +N +A LR+ +P AD +LSK++TLR A YI +L ++L + A +
Sbjct: 101 KKERRRTESINSAFAELRECIPNVPADTKLSKIKTLRLATSYIAYLMDVLAKDAQSGDPE 160
Query: 140 AGAVPQRRAECNSDGESK 157
A ++A+ + + K
Sbjct: 161 AFKAELKKADGGRESKRK 178
>gi|38455396 neurogenin 1 [Homo sapiens]
Length = 237
Score = 50.8 bits (120), Expect = 6e-07
Identities = 36/100 (36%), Positives = 47/100 (47%), Gaps = 10/100 (10%)
Query: 77 KRNERERQRVRCVNEGYARLRDHLPRELADKRLSKVETLRAAIDYIKHLQELLERQAWGL 136
K N+RER R+ +N LR LP D +L+K+ETLR A +YI L E L GL
Sbjct: 96 KANDRERNRMHNLNAALDALRSVLPSFPDDTKLTKIETLRFAYNYIWALAETLRLADQGL 155
Query: 137 EGAAG---AVPQRRAECNSDGESKASSAPSPSSEPEEGGS 173
G +P + C PSP+S+ E GS
Sbjct: 156 PGGGARERLLPPQCVPC-------LPGPPSPASDAESWGS 188
>gi|4885075 atonal homolog 1 [Homo sapiens]
Length = 354
Score = 50.8 bits (120), Expect = 6e-07
Identities = 36/104 (34%), Positives = 52/104 (50%), Gaps = 14/104 (13%)
Query: 79 NERERQRVRCVNEGYARLRDHLPRELADKRLSKVETLRAAIDYIKHLQELLERQAWGLEG 138
N RER+R+ +N + +LR+ +P DK+LSK ETL+ A YI L ELL+ + G +
Sbjct: 165 NARERRRMHGLNHAFDQLRNVIPSFNNDKKLSKYETLQMAQIYINALSELLQTPSGGEQ- 223
Query: 139 AAGAVPQRRAECNSDG---------ESKASSAPSPSSEPEEGGS 173
P A C SD E A +A + ++ GGS
Sbjct: 224 ----PPPPPASCKSDHHHLRTAASYEGGAGNATAAGAQQASGGS 263
>gi|23097242 nephew of atonal 3 [Homo sapiens]
Length = 166
Score = 49.7 bits (117), Expect = 1e-06
Identities = 26/52 (50%), Positives = 36/52 (69%)
Query: 79 NERERQRVRCVNEGYARLRDHLPRELADKRLSKVETLRAAIDYIKHLQELLE 130
N RER+R+ +NE + +LR +P +KRLS++ETLR AI YI + ELLE
Sbjct: 107 NIRERKRMFNLNEAFDQLRRKVPTFAYEKRLSRIETLRLAIVYISFMTELLE 158
>gi|4885619 T-cell acute lymphocytic leukemia 2 [Homo sapiens]
Length = 108
Score = 49.3 bits (116), Expect = 2e-06
Identities = 28/62 (45%), Positives = 37/62 (59%)
Query: 79 NERERQRVRCVNEGYARLRDHLPRELADKRLSKVETLRAAIDYIKHLQELLERQAWGLEG 138
N RER R + VN +A+LR +P DK+LSK ETLR A+ YI L ++L Q+ G
Sbjct: 8 NTRERWRQQNVNSAFAKLRKLIPTHPPDKKLSKNETLRLAMRYINFLVKVLGEQSLQQTG 67
Query: 139 AA 140
A
Sbjct: 68 VA 69
>gi|38202237 transcription factor 21 [Homo sapiens]
Length = 179
Score = 48.9 bits (115), Expect = 2e-06
Identities = 23/51 (45%), Positives = 36/51 (70%)
Query: 79 NERERQRVRCVNEGYARLRDHLPRELADKRLSKVETLRAAIDYIKHLQELL 129
N RER R+R +++ ++RL+ LP D +LSK++TLR A YI HL+++L
Sbjct: 85 NARERARMRVLSKAFSRLKTTLPWVPPDTKLSKLDTLRLASSYIAHLRQIL 135
>gi|38202239 transcription factor 21 [Homo sapiens]
Length = 179
Score = 48.9 bits (115), Expect = 2e-06
Identities = 23/51 (45%), Positives = 36/51 (70%)
Query: 79 NERERQRVRCVNEGYARLRDHLPRELADKRLSKVETLRAAIDYIKHLQELL 129
N RER R+R +++ ++RL+ LP D +LSK++TLR A YI HL+++L
Sbjct: 85 NARERARMRVLSKAFSRLKTTLPWVPPDTKLSKLDTLRLASSYIAHLRQIL 135
>gi|4507363 T-cell acute lymphocytic leukemia 1 [Homo sapiens]
Length = 331
Score = 47.4 bits (111), Expect = 6e-06
Identities = 41/115 (35%), Positives = 47/115 (40%), Gaps = 23/115 (20%)
Query: 79 NERERQRVRCVNEGYARLRDHLPRELADKRLSKVETLRAAIDYIKHLQELLERQ------ 132
N RER R + VN +A LR +P DK+LSK E LR A+ YI L +LL Q
Sbjct: 193 NSRERWRQQNVNGAFAELRKLIPTHPPDKKLSKNEILRLAMKYINFLAKLLNDQEEEGTQ 252
Query: 133 -------------AWGLEGAAGAVP----QRRAECNSDGESKASSAPSPSSEPEE 170
G G GA P Q NS S A SP S EE
Sbjct: 253 RAKTGKDPVVGAGGGGGGGGGGAPPDDLLQDVLSPNSSCGSSLDGAASPDSYTEE 307
>gi|23111009 myogenic differentiation 1 [Homo sapiens]
Length = 320
Score = 46.6 bits (109), Expect = 1e-05
Identities = 37/93 (39%), Positives = 48/93 (51%), Gaps = 7/93 (7%)
Query: 81 RERQRVRCVNEGYARLRDHLPRELADKRLSKVETLRAAIDYIKHLQELLERQAWGLEGAA 140
RER+R+ VNE + L+ ++RL KVE LR AI YI+ LQ LL Q GAA
Sbjct: 117 RERRRLSKVNEAFETLK-RCTSSNPNQRLPKVEILRNAIRYIEGLQALLRDQDAAPPGAA 175
Query: 141 ------GAVPQRRAECNSDGESKASSAPSPSSE 167
G +P R + G+S ASS S S+
Sbjct: 176 AAFYAPGPLPPGRGGEHYSGDSDASSPRSNCSD 208
Score = 26.9 bits (58), Expect = 8.8
Identities = 38/147 (25%), Positives = 54/147 (36%), Gaps = 23/147 (15%)
Query: 25 PGTLPGLPRRDPLRVALRLDAACWEWARSGCARGWQYLPVPLDSAFEPAFLRKRNERERQ 84
PG LP P R + DA+ RS C+ G +D + P+ R+RN
Sbjct: 181 PGPLP--PGRGGEHYSGDSDASS---PRSNCSDGM------MDYSGPPSGARRRN----- 224
Query: 85 RVRCVNEGYARLRDHLPRELADKRLSKVETLRAAIDYIKHLQELLERQAWGLEGAAGAVP 144
C Y PR +S ++ L + ++ I E A L P
Sbjct: 225 ---CYEGAYYNEAPSEPRPGKSAAVSSLDCLSSIVERIS--TESPAAPALLLADVPSESP 279
Query: 145 QRRAECN--SDGESKASSAPSPSSEPE 169
RR E S+GES SP + P+
Sbjct: 280 PRRQEAAAPSEGESSGDPTQSPDAAPQ 306
>gi|161484632 nescient helix loop helix 2 [Homo sapiens]
Length = 135
Score = 46.2 bits (108), Expect = 1e-05
Identities = 25/50 (50%), Positives = 31/50 (62%)
Query: 81 RERQRVRCVNEGYARLRDHLPRELADKRLSKVETLRAAIDYIKHLQELLE 130
RER RV N +A LR LP DK+LSK+E LR AI YI +L +L+
Sbjct: 85 RERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILRLAICYISYLNHVLD 134
>gi|5031945 nescient helix loop helix 2 [Homo sapiens]
Length = 135
Score = 46.2 bits (108), Expect = 1e-05
Identities = 25/50 (50%), Positives = 31/50 (62%)
Query: 81 RERQRVRCVNEGYARLRDHLPRELADKRLSKVETLRAAIDYIKHLQELLE 130
RER RV N +A LR LP DK+LSK+E LR AI YI +L +L+
Sbjct: 85 RERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILRLAICYISYLNHVLD 134
>gi|31077092 neurogenin 2 [Homo sapiens]
Length = 272
Score = 46.2 bits (108), Expect = 1e-05
Identities = 36/97 (37%), Positives = 48/97 (49%), Gaps = 7/97 (7%)
Query: 77 KRNERERQRVRCVNEGYARLRDHLPRELADKRLSKVETLRAAIDYIKHLQE---LLERQA 133
K N RER R+ +N LR+ LP D +L+K+ETLR A +YI L E L +
Sbjct: 116 KANNRERNRMHNLNAALDALREVLPTFPEDAKLTKIETLRFAHNYIWALTETLRLADHCG 175
Query: 134 WGLEGAAGAVPQRRAECNSDGESKASS----APSPSS 166
G G GA+ + G S A S +PSP+S
Sbjct: 176 GGGGGLPGALFSEAVLLSPGGASAALSSSGDSPSPAS 212
>gi|5031943 nescient helix loop helix 1 [Homo sapiens]
Length = 133
Score = 46.2 bits (108), Expect = 1e-05
Identities = 25/50 (50%), Positives = 31/50 (62%)
Query: 81 RERQRVRCVNEGYARLRDHLPRELADKRLSKVETLRAAIDYIKHLQELLE 130
RER RV N +A LR LP DK+LSK+E LR AI YI +L +L+
Sbjct: 83 RERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILRLAICYISYLNHVLD 132
>gi|21553337 atonal homolog 7 [Homo sapiens]
Length = 152
Score = 45.8 bits (107), Expect = 2e-05
Identities = 26/60 (43%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 79 NERERQRVRCVNEGYARLRDHLPRELADKRLSKVETLRAAIDYIKHLQELL-ERQAWGLE 137
N RER+R++ +N + RLR +P+ DK+LSK ETL+ A+ YI L +L E + +G E
Sbjct: 46 NARERRRMQGLNTAFDRLRRVVPQWGQDKKLSKYETLQMALSYIMALTRILAEAERFGSE 105
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.133 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,562,076
Number of Sequences: 37866
Number of extensions: 357957
Number of successful extensions: 1667
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 63
Number of HSP's that attempted gapping in prelim test: 1539
Number of HSP's gapped (non-prelim): 177
length of query: 173
length of database: 18,247,518
effective HSP length: 95
effective length of query: 78
effective length of database: 14,650,248
effective search space: 1142719344
effective search space used: 1142719344
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.