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Search of human proteins with 113424485
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|113424485 PREDICTED: hypothetical protein [Homo sapiens]
(107 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169206294 PREDICTED: hypothetical protein [Homo sapiens] 218 6e-58
gi|113424485 PREDICTED: hypothetical protein [Homo sapiens] 218 6e-58
gi|113424213 PREDICTED: hypothetical protein [Homo sapiens] 217 2e-57
gi|21536369 TBP-associated factor 1C isoform 1 [Homo sapiens] 33 0.038
gi|21536367 TBP-associated factor 1C isoform 2 [Homo sapiens] 33 0.038
gi|239758167 PREDICTED: hypothetical protein XP_002346321 [Homo ... 33 0.065
gi|56549696 E1A binding protein p400 [Homo sapiens] 32 0.11
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa... 32 0.11
gi|239757729 PREDICTED: hypothetical protein [Homo sapiens] 31 0.19
gi|239752222 PREDICTED: hypothetical protein [Homo sapiens] 31 0.19
gi|239746743 PREDICTED: hypothetical protein [Homo sapiens] 31 0.19
gi|40255047 pleckstrin homology domain containing, family H (wit... 30 0.42
gi|66773030 solute carrier family 1, member 1 [Homo sapiens] 30 0.55
gi|149944560 forkhead box D4-like 2 [Homo sapiens] 29 0.71
gi|76880472 forkhead box D4-like 4 [Homo sapiens] 29 0.71
gi|17149834 sortilin 1 preproprotein [Homo sapiens] 29 0.93
gi|239746776 PREDICTED: hypothetical protein XP_002343846 [Homo ... 29 0.93
gi|119433677 chloride channel 1, skeletal muscle [Homo sapiens] 28 1.2
gi|239753500 PREDICTED: hypothetical protein [Homo sapiens] 28 1.2
gi|239748051 PREDICTED: hypothetical protein XP_002346521 [Homo ... 28 1.2
gi|239745773 PREDICTED: hypothetical protein XP_002343550 [Homo ... 28 1.2
gi|239745771 PREDICTED: hypothetical protein XP_002343549 [Homo ... 28 1.2
gi|239745769 PREDICTED: hypothetical protein XP_002343548 [Homo ... 28 1.2
gi|239741944 PREDICTED: hypothetical protein XP_002342359 [Homo ... 28 1.2
gi|209954781 neurotrophic factor artemin isoform 1 precursor [Ho... 28 1.2
gi|209954776 neurotrophic factor artemin isoform 1 precursor [Ho... 28 1.2
gi|148746187 zinc finger CCCH-type containing 12B [Homo sapiens] 28 1.2
gi|112421108 capicua homolog [Homo sapiens] 28 1.2
gi|24586686 voltage-dependent calcium channel gamma-8 subunit [H... 28 1.2
gi|153946391 N-methyl-D-aspartate receptor subunit 2D precursor ... 28 1.6
>gi|169206294 PREDICTED: hypothetical protein [Homo sapiens]
Length = 107
Score = 218 bits (556), Expect = 6e-58
Identities = 107/107 (100%), Positives = 107/107 (100%)
Query: 1 MPRRRREKWNSSFWLATHLVLLPEQGTATGSSISAPPKPQQPVPVSIPPASVARGSRALV 60
MPRRRREKWNSSFWLATHLVLLPEQGTATGSSISAPPKPQQPVPVSIPPASVARGSRALV
Sbjct: 1 MPRRRREKWNSSFWLATHLVLLPEQGTATGSSISAPPKPQQPVPVSIPPASVARGSRALV 60
Query: 61 GLAEASVTRQLTYDWLAERARRAPPGKALGSGLADPTTSVFLDWLKE 107
GLAEASVTRQLTYDWLAERARRAPPGKALGSGLADPTTSVFLDWLKE
Sbjct: 61 GLAEASVTRQLTYDWLAERARRAPPGKALGSGLADPTTSVFLDWLKE 107
>gi|113424485 PREDICTED: hypothetical protein [Homo sapiens]
Length = 107
Score = 218 bits (556), Expect = 6e-58
Identities = 107/107 (100%), Positives = 107/107 (100%)
Query: 1 MPRRRREKWNSSFWLATHLVLLPEQGTATGSSISAPPKPQQPVPVSIPPASVARGSRALV 60
MPRRRREKWNSSFWLATHLVLLPEQGTATGSSISAPPKPQQPVPVSIPPASVARGSRALV
Sbjct: 1 MPRRRREKWNSSFWLATHLVLLPEQGTATGSSISAPPKPQQPVPVSIPPASVARGSRALV 60
Query: 61 GLAEASVTRQLTYDWLAERARRAPPGKALGSGLADPTTSVFLDWLKE 107
GLAEASVTRQLTYDWLAERARRAPPGKALGSGLADPTTSVFLDWLKE
Sbjct: 61 GLAEASVTRQLTYDWLAERARRAPPGKALGSGLADPTTSVFLDWLKE 107
>gi|113424213 PREDICTED: hypothetical protein [Homo sapiens]
Length = 107
Score = 217 bits (552), Expect = 2e-57
Identities = 106/107 (99%), Positives = 106/107 (99%)
Query: 1 MPRRRREKWNSSFWLATHLVLLPEQGTATGSSISAPPKPQQPVPVSIPPASVARGSRALV 60
MPRRRREKWNSSFWLATHLVLLPEQGTATGSSISAPPKPQQPVPVSIPPASVARGSRALV
Sbjct: 1 MPRRRREKWNSSFWLATHLVLLPEQGTATGSSISAPPKPQQPVPVSIPPASVARGSRALV 60
Query: 61 GLAEASVTRQLTYDWLAERARRAPPGKALGSGLADPTTSVFLDWLKE 107
GLAEASVTRQLTYDWLAERARRAPPGKALG GLADPTTSVFLDWLKE
Sbjct: 61 GLAEASVTRQLTYDWLAERARRAPPGKALGGGLADPTTSVFLDWLKE 107
>gi|21536369 TBP-associated factor 1C isoform 1 [Homo sapiens]
Length = 869
Score = 33.5 bits (75), Expect = 0.038
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 4 RRREKWNSSFWLATHLVLLPEQGTATGSSISAPPKPQQPVPVSIPPASVARGSRALVGLA 63
+RR + +SSF L+ H+ P + T++ S PP P+P + PP+ G+
Sbjct: 751 KRRTQLSSSFSLSGHVD--PSEDTSSPHSPEWPPADALPLPPTTPPSQELTPDACAQGV- 807
Query: 64 EASVTRQLTYDWLAE-RARRAPPGKA 88
S RQ+ D++A+ +R PG A
Sbjct: 808 -PSEQRQMLRDYMAKLPPQRDTPGCA 832
>gi|21536367 TBP-associated factor 1C isoform 2 [Homo sapiens]
Length = 775
Score = 33.5 bits (75), Expect = 0.038
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 4 RRREKWNSSFWLATHLVLLPEQGTATGSSISAPPKPQQPVPVSIPPASVARGSRALVGLA 63
+RR + +SSF L+ H+ P + T++ S PP P+P + PP+ G+
Sbjct: 657 KRRTQLSSSFSLSGHVD--PSEDTSSPHSPEWPPADALPLPPTTPPSQELTPDACAQGV- 713
Query: 64 EASVTRQLTYDWLAE-RARRAPPGKA 88
S RQ+ D++A+ +R PG A
Sbjct: 714 -PSEQRQMLRDYMAKLPPQRDTPGCA 738
>gi|239758167 PREDICTED: hypothetical protein XP_002346321 [Homo
sapiens]
Length = 271
Score = 32.7 bits (73), Expect = 0.065
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Query: 37 PKPQQPVPVSIPPASVARGSRALVGLAEASVTRQLTYDWLAERAR------RAP-PGKAL 89
P P PV V++PP RG +++ R W A +R R P PG+AL
Sbjct: 89 PDPALPVSVAVPPCPACRGPQSISRSRPRRAVRPRPGPWPAAPSRGPVRSCRGPRPGRAL 148
Query: 90 GS 91
GS
Sbjct: 149 GS 150
>gi|56549696 E1A binding protein p400 [Homo sapiens]
Length = 3122
Score = 32.0 bits (71), Expect = 0.11
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 20 VLLPEQGTATGSSISAPPKPQQPVPVSIPP 49
VLLP G A G +++PP P P ++PP
Sbjct: 300 VLLPGAGGAAGFGMTSPPPPTSPSRTAVPP 329
>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
sapiens]
Length = 2715
Score = 32.0 bits (71), Expect = 0.11
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 34 SAPPKPQQPVPVSIPPASVARGSRALVGLAE--ASVTRQLTYDWLAERARRAPPGKA 88
++PP PQ+P PV PP + S V L E S+ R+ T+ W + PP A
Sbjct: 569 TSPPVPQEPAPVPSPPRAPTPPSTP-VPLPEKRRSILREPTFRWTSLTRELPPPPPA 624
>gi|239757729 PREDICTED: hypothetical protein [Homo sapiens]
Length = 329
Score = 31.2 bits (69), Expect = 0.19
Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 2 PRRRREKWNSSFWLATHLVLLPEQGTATGSSISAPPKPQQPVPVSIPPASVARGSR 57
P R R W SF L PE+GT ++ P P+ P + PP S RG R
Sbjct: 32 PERDRPDWPRSF----KPPLSPEKGTKASGPQTSAPSPRDP-GLHTPPCSPRRGRR 82
>gi|239752222 PREDICTED: hypothetical protein [Homo sapiens]
Length = 329
Score = 31.2 bits (69), Expect = 0.19
Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 2 PRRRREKWNSSFWLATHLVLLPEQGTATGSSISAPPKPQQPVPVSIPPASVARGSR 57
P R R W SF L PE+GT ++ P P+ P + PP S RG R
Sbjct: 32 PERDRPDWPRSF----KPPLSPEKGTKASGPQTSAPSPRDP-GLHTPPCSPRRGRR 82
>gi|239746743 PREDICTED: hypothetical protein [Homo sapiens]
Length = 329
Score = 31.2 bits (69), Expect = 0.19
Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 2 PRRRREKWNSSFWLATHLVLLPEQGTATGSSISAPPKPQQPVPVSIPPASVARGSR 57
P R R W SF L PE+GT ++ P P+ P + PP S RG R
Sbjct: 32 PERDRPDWPRSF----KPPLSPEKGTKASGPQTSAPSPRDP-GLHTPPCSPRRGRR 82
>gi|40255047 pleckstrin homology domain containing, family H (with
MyTH4 domain) member 3 [Homo sapiens]
Length = 793
Score = 30.0 bits (66), Expect = 0.42
Identities = 23/59 (38%), Positives = 27/59 (45%), Gaps = 12/59 (20%)
Query: 35 APPKPQQPVPVSIPPASVARGSRAL--VGLAEASVTRQLTYDWLAERARRAPPGKALGS 91
APP+ P P PP S A + AL GLA+ AERARR G+ GS
Sbjct: 567 APPREDPPRPTPRPPPSAALLAGALWSPGLAKRR----------AERARRGGAGRTAGS 615
>gi|66773030 solute carrier family 1, member 1 [Homo sapiens]
Length = 524
Score = 29.6 bits (65), Expect = 0.55
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 9/71 (12%)
Query: 27 TATGSSISAPPKPQQPVPVSIPPASVARGSRALVGLAEASVTRQLTYDWLAERARRAPP- 85
TAT +SI A PQ + + S VGL VT + DWL +R R
Sbjct: 400 TATSASIGAAGVPQAGLVTMVIVLSA-------VGLPAEDVTLIIAVDWLLDRFRTMVNV 452
Query: 86 -GKALGSGLAD 95
G A G+G+ +
Sbjct: 453 LGDAFGTGIVE 463
>gi|149944560 forkhead box D4-like 2 [Homo sapiens]
Length = 416
Score = 29.3 bits (64), Expect = 0.71
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
Query: 37 PKPQQPVPVSIPPASVARGSRALVGLAEASVTRQLTYDWLAERARRAPPGKALGSGLADP 96
P P QPVP + P + R AL+ L Y L+ R P KA G+ LA P
Sbjct: 240 PAPPQPVPGAYPNTAPGRRPYALLH------PHPLRYLLLSARVYAGAPKKAEGADLATP 293
>gi|76880472 forkhead box D4-like 4 [Homo sapiens]
Length = 416
Score = 29.3 bits (64), Expect = 0.71
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
Query: 37 PKPQQPVPVSIPPASVARGSRALVGLAEASVTRQLTYDWLAERARRAPPGKALGSGLADP 96
P P QPVP + P + R AL+ L Y L+ R P KA G+ LA P
Sbjct: 240 PAPPQPVPGAYPNTAPGRRPYALLH------PHPLRYLLLSARVYAGAPKKAEGADLATP 293
>gi|17149834 sortilin 1 preproprotein [Homo sapiens]
Length = 831
Score = 28.9 bits (63), Expect = 0.93
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 8 KWNSSFWLATHLVLLPEQGTATGSSISAPPKPQQPVPVSIPPASVARGSRA 58
+W L L LLP T + + APP P P+P P V+ G RA
Sbjct: 13 RWPHGLGLLLLLQLLPPS-TLSQDRLDAPPPPAAPLPRWSGPIGVSWGLRA 62
>gi|239746776 PREDICTED: hypothetical protein XP_002343846 [Homo
sapiens]
Length = 210
Score = 28.9 bits (63), Expect = 0.93
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Query: 12 SFWLATHLVLLPEQGTAT-----GSSISAPPKPQQPVPVSIPPAS 51
S W +TH V+LP + + GS S P P+ P V PP S
Sbjct: 55 SSWPSTHSVVLPSRSPDSVVPPPGSPDSVVPPPRSPDSVVPPPGS 99
>gi|119433677 chloride channel 1, skeletal muscle [Homo sapiens]
Length = 988
Score = 28.5 bits (62), Expect = 1.2
Identities = 20/57 (35%), Positives = 23/57 (40%), Gaps = 14/57 (24%)
Query: 2 PRRRREKWNSSFWLATHLVLLPEQ---GTATGSSISAPPKPQQPVPVSIPPASVARG 55
P E WN LPE T TG I+A P+ P P PP S+A G
Sbjct: 900 PPSSAENWN-----------LPEDRPGATGTGDVIAASPETPVPSPSPEPPLSLAPG 945
>gi|239753500 PREDICTED: hypothetical protein [Homo sapiens]
Length = 213
Score = 28.5 bits (62), Expect = 1.2
Identities = 24/72 (33%), Positives = 29/72 (40%), Gaps = 8/72 (11%)
Query: 26 GTATGSSISAPPKPQQPVPVSIPPASVARGSRA-----LVGLAEASVTRQLTYDWLAERA 80
G A +S PP+ + VP P S AR A V L + TR L E
Sbjct: 73 GLAASRELSPPPRAPRTVPAPHPRLSPARRPGAEPENKFVALRGSHKTRNREPGMLREAF 132
Query: 81 RRAPPGKALGSG 92
+ APP GSG
Sbjct: 133 KSAPP---TGSG 141
>gi|239748051 PREDICTED: hypothetical protein XP_002346521 [Homo
sapiens]
Length = 213
Score = 28.5 bits (62), Expect = 1.2
Identities = 24/72 (33%), Positives = 29/72 (40%), Gaps = 8/72 (11%)
Query: 26 GTATGSSISAPPKPQQPVPVSIPPASVARGSRA-----LVGLAEASVTRQLTYDWLAERA 80
G A +S PP+ + VP P S AR A V L + TR L E
Sbjct: 73 GLAASRELSPPPRAPRTVPAPHPRLSPARRPGAEPENKFVALRGSHKTRNREPGMLREAF 132
Query: 81 RRAPPGKALGSG 92
+ APP GSG
Sbjct: 133 KSAPP---TGSG 141
>gi|239745773 PREDICTED: hypothetical protein XP_002343550 [Homo
sapiens]
Length = 323
Score = 28.5 bits (62), Expect = 1.2
Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 7/88 (7%)
Query: 5 RREKWNSSFWLATHLVLLPEQGTATGSSISAPPKPQQPVPVSIPPASVARGSRALVGLAE 64
R E W W++ +G A GS A P P+ A+ G +
Sbjct: 81 RWEVWGHPLWVSRF------RGWAPGSRRGARSLPASPLGAQARAAACVPGKGGAASRGD 134
Query: 65 ASVTRQLTYDWLAERARRAPPGKALGSG 92
+RQ + LA R+ RAP + +G+G
Sbjct: 135 TPCSRQPSRSPLAGRSVRAPQ-RRVGAG 161
>gi|239745771 PREDICTED: hypothetical protein XP_002343549 [Homo
sapiens]
Length = 323
Score = 28.5 bits (62), Expect = 1.2
Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 7/88 (7%)
Query: 5 RREKWNSSFWLATHLVLLPEQGTATGSSISAPPKPQQPVPVSIPPASVARGSRALVGLAE 64
R E W W++ +G A GS A P P+ A+ G +
Sbjct: 81 RWEVWGHPLWVSRF------RGWAPGSRRGARSLPASPLGAQARAAACVPGKGGAASRGD 134
Query: 65 ASVTRQLTYDWLAERARRAPPGKALGSG 92
+RQ + LA R+ RAP + +G+G
Sbjct: 135 TPCSRQPSRSPLAGRSVRAPQ-RRVGAG 161
>gi|239745769 PREDICTED: hypothetical protein XP_002343548 [Homo
sapiens]
Length = 323
Score = 28.5 bits (62), Expect = 1.2
Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 7/88 (7%)
Query: 5 RREKWNSSFWLATHLVLLPEQGTATGSSISAPPKPQQPVPVSIPPASVARGSRALVGLAE 64
R E W W++ +G A GS A P P+ A+ G +
Sbjct: 81 RWEVWGHPLWVSRF------RGWAPGSRRGARSLPASPLGAQARAAACVPGKGGAASRGD 134
Query: 65 ASVTRQLTYDWLAERARRAPPGKALGSG 92
+RQ + LA R+ RAP + +G+G
Sbjct: 135 TPCSRQPSRSPLAGRSVRAPQ-RRVGAG 161
>gi|239741944 PREDICTED: hypothetical protein XP_002342359 [Homo
sapiens]
Length = 213
Score = 28.5 bits (62), Expect = 1.2
Identities = 24/72 (33%), Positives = 29/72 (40%), Gaps = 8/72 (11%)
Query: 26 GTATGSSISAPPKPQQPVPVSIPPASVARGSRA-----LVGLAEASVTRQLTYDWLAERA 80
G A +S PP+ + VP P S AR A V L + TR L E
Sbjct: 73 GLAASRELSPPPRAPRTVPAPHPRLSPARRPGAEPENKFVALRGSHKTRNREPGMLREAF 132
Query: 81 RRAPPGKALGSG 92
+ APP GSG
Sbjct: 133 KSAPP---TGSG 141
>gi|209954781 neurotrophic factor artemin isoform 1 precursor
[Homo sapiens]
Length = 220
Score = 28.5 bits (62), Expect = 1.2
Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 17/84 (20%)
Query: 2 PRRRREKWNSSFWLATHLVLLPEQGTATGSSISAPPKPQQPVPVSIPPASVARGSRALVG 61
PR++ W + LA +L + GS+ +P + P PV PA G R
Sbjct: 17 PRQQPALWPT---LAALALLSSVAEASLGSAPRSPAPREGPPPVLASPAGHLPGGR---- 69
Query: 62 LAEASVTRQLTYDWLAERARRAPP 85
T W + RARR PP
Sbjct: 70 ----------TARWCSGRARRPPP 83
Score = 27.3 bits (59), Expect = 2.7
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 29 TGSSISAPPKPQQPV-PVSIPPASVARGSRA 58
+G + PP+P +P P PP+++ RG RA
Sbjct: 75 SGRARRPPPQPSRPAPPPPAPPSALPRGGRA 105
>gi|209954776 neurotrophic factor artemin isoform 1 precursor
[Homo sapiens]
Length = 220
Score = 28.5 bits (62), Expect = 1.2
Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 17/84 (20%)
Query: 2 PRRRREKWNSSFWLATHLVLLPEQGTATGSSISAPPKPQQPVPVSIPPASVARGSRALVG 61
PR++ W + LA +L + GS+ +P + P PV PA G R
Sbjct: 17 PRQQPALWPT---LAALALLSSVAEASLGSAPRSPAPREGPPPVLASPAGHLPGGR---- 69
Query: 62 LAEASVTRQLTYDWLAERARRAPP 85
T W + RARR PP
Sbjct: 70 ----------TARWCSGRARRPPP 83
Score = 27.3 bits (59), Expect = 2.7
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 29 TGSSISAPPKPQQPV-PVSIPPASVARGSRA 58
+G + PP+P +P P PP+++ RG RA
Sbjct: 75 SGRARRPPPQPSRPAPPPPAPPSALPRGGRA 105
>gi|148746187 zinc finger CCCH-type containing 12B [Homo sapiens]
Length = 825
Score = 28.5 bits (62), Expect = 1.2
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 22 LPEQGTATGSSISAPPKPQQPVPVSIPPASVARGSRALVGLAEASVTRQLTYDWLAERAR 81
L Q +TG+ S P P+P +I P + + RALV S++ Y+ R R
Sbjct: 650 LHAQHPSTGTRSSCPA--DYPMPPNIHPGATPQPGRALVMTRMDSISDSRLYESNPVRQR 707
Query: 82 RAP 84
R P
Sbjct: 708 RPP 710
>gi|112421108 capicua homolog [Homo sapiens]
Length = 1608
Score = 28.5 bits (62), Expect = 1.2
Identities = 26/80 (32%), Positives = 32/80 (40%), Gaps = 5/80 (6%)
Query: 23 PEQGTATGSSISAPPKPQQPVPVSI--PPASVARGSRALVGLAEASVTRQLTYDWLAERA 80
P GT GS A P PVP+ I P A G V ++ +QL +A
Sbjct: 786 PGGGTTAGSGAGAGSGPNGPVPLGILQPGALGKAGGITQVQYILPTLPQQLQ---VAPAP 842
Query: 81 RRAPPGKALGSGLADPTTSV 100
AP KA PTTS+
Sbjct: 843 APAPGTKAAAPSGPAPTTSI 862
>gi|24586686 voltage-dependent calcium channel gamma-8 subunit [Homo
sapiens]
Length = 425
Score = 28.5 bits (62), Expect = 1.2
Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Query: 6 REKWNSSFWLATHLVLLPEQGTATGSSISAPPKPQQPVPVSIPPASVARGSRALVGLAEA 65
R++ +S +L H E G +++ PP P P PPA A L A A
Sbjct: 357 RDRGGASGFLTLHNAFPKEAGGGVTVTVTGPPAP----PAPAPPAPSAPAPGTLAKEAAA 412
Query: 66 SVTRQL 71
S T L
Sbjct: 413 SNTNTL 418
>gi|153946391 N-methyl-D-aspartate receptor subunit 2D precursor
[Homo sapiens]
Length = 1336
Score = 28.1 bits (61), Expect = 1.6
Identities = 24/61 (39%), Positives = 27/61 (44%), Gaps = 10/61 (16%)
Query: 36 PPKPQQPVPVSIPPA-SVARGSRALVGLAEASVTRQLTYDWLAERARRAPPGKALGSGLA 94
PP P QP+P PA A G V ASV R W + PPG G+GLA
Sbjct: 908 PPPPPQPLPSPAYPAPRPAPGPAPFVPRERASVDR-----WRRTKG-AGPPG---GAGLA 958
Query: 95 D 95
D
Sbjct: 959 D 959
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.130 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,208,277
Number of Sequences: 37866
Number of extensions: 237076
Number of successful extensions: 2150
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 102
Number of HSP's that attempted gapping in prelim test: 2015
Number of HSP's gapped (non-prelim): 237
length of query: 107
length of database: 18,247,518
effective HSP length: 77
effective length of query: 30
effective length of database: 15,331,836
effective search space: 459955080
effective search space used: 459955080
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.