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Search of human proteins with 113424309
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|113424309 PREDICTED: similar to FRAS1 related extracellular
matrix protein 2 [Homo sapiens]
(322 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|113424309 PREDICTED: similar to FRAS1 related extracellular m... 645 0.0
gi|113424119 PREDICTED: similar to FRAS1 related extracellular m... 645 0.0
gi|169206056 PREDICTED: similar to FRAS1 related extracellular m... 639 0.0
gi|79749430 FRAS1-related extracellular matrix protein 2 precurs... 99 5e-21
gi|55770854 N-methyl-D-aspartate receptor subunit 2C precursor [... 40 0.002
gi|225690497 tight junction associated protein 1 isoform b [Homo... 37 0.024
gi|225690495 tight junction associated protein 1 isoform b [Homo... 37 0.024
gi|225690493 tight junction associated protein 1 isoform b [Homo... 37 0.024
gi|225690491 tight junction associated protein 1 isoform b [Homo... 37 0.024
gi|225690489 tight junction associated protein 1 isoform a [Homo... 37 0.024
gi|225690487 tight junction associated protein 1 isoform a [Homo... 37 0.024
gi|224926824 SH2B adaptor protein 1 isoform 2 [Homo sapiens] 35 0.12
gi|224926830 SH2B adaptor protein 1 isoform 3 [Homo sapiens] 35 0.12
gi|224926828 SH2B adaptor protein 1 isoform 2 [Homo sapiens] 35 0.12
gi|224926826 SH2B adaptor protein 1 isoform 1 [Homo sapiens] 35 0.12
gi|224926822 SH2B adaptor protein 1 isoform 2 [Homo sapiens] 35 0.12
gi|150170670 piccolo isoform 2 [Homo sapiens] 34 0.15
gi|150378539 piccolo isoform 1 [Homo sapiens] 34 0.15
gi|110225353 sprouty-related, EVH1 domain containing 3 isoform a... 34 0.15
gi|12669915 E2F transcription factor 4 [Homo sapiens] 34 0.20
gi|116006967 neuregulin 1 isoform GGF2 [Homo sapiens] 33 0.26
gi|239758013 PREDICTED: hypothetical protein [Homo sapiens] 33 0.26
gi|91208423 thyroid receptor-interacting protein 6 [Homo sapiens] 33 0.26
gi|112380630 leiomodin 1 (smooth muscle) [Homo sapiens] 33 0.26
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 33 0.34
gi|118402590 myosin XV [Homo sapiens] 33 0.34
gi|197276594 RNA binding motif protein 20 [Homo sapiens] 33 0.34
gi|4505195 mitogen-activated protein kinase kinase kinase 11 [Ho... 33 0.34
gi|239754512 PREDICTED: hypothetical protein [Homo sapiens] 33 0.44
gi|239749073 PREDICTED: hypothetical protein [Homo sapiens] 33 0.44
>gi|113424309 PREDICTED: similar to FRAS1 related extracellular
matrix protein 2 [Homo sapiens]
Length = 322
Score = 645 bits (1664), Expect = 0.0
Identities = 322/322 (100%), Positives = 322/322 (100%)
Query: 1 MKRPGPCDSSRDSTSQVLRDLRGRESWAGDRRAQPTPSPRERASPSSPPSQPPPGPLPLL 60
MKRPGPCDSSRDSTSQVLRDLRGRESWAGDRRAQPTPSPRERASPSSPPSQPPPGPLPLL
Sbjct: 1 MKRPGPCDSSRDSTSQVLRDLRGRESWAGDRRAQPTPSPRERASPSSPPSQPPPGPLPLL 60
Query: 61 LVSLVQARVPEHENELHSGDYAPPGSSVEIAKIFQADVVPRLQEGAVIVLGSTAHAVLAA 120
LVSLVQARVPEHENELHSGDYAPPGSSVEIAKIFQADVVPRLQEGAVIVLGSTAHAVLAA
Sbjct: 61 LVSLVQARVPEHENELHSGDYAPPGSSVEIAKIFQADVVPRLQEGAVIVLGSTAHAVLAA 120
Query: 121 PPYSIIKTSETENPCILELMDDVLYEAVEELRLRLIKFGETKFNVTEPKEPGESVVIRIP 180
PPYSIIKTSETENPCILELMDDVLYEAVEELRLRLIKFGETKFNVTEPKEPGESVVIRIP
Sbjct: 121 PPYSIIKTSETENPCILELMDDVLYEAVEELRLRLIKFGETKFNVTEPKEPGESVVIRIP 180
Query: 181 VIHQGDTSKVSIRQEALCSDGGRESVGATLLLWTPTCPRRGRAQTRRRGRHVGQRGPLPW 240
VIHQGDTSKVSIRQEALCSDGGRESVGATLLLWTPTCPRRGRAQTRRRGRHVGQRGPLPW
Sbjct: 181 VIHQGDTSKVSIRQEALCSDGGRESVGATLLLWTPTCPRRGRAQTRRRGRHVGQRGPLPW 240
Query: 241 KRRARAPGKGCYAQDRVLTVEERTSAGYHAVRQKAGRLRSQSSGSAAQAAGRGSLEAGIR 300
KRRARAPGKGCYAQDRVLTVEERTSAGYHAVRQKAGRLRSQSSGSAAQAAGRGSLEAGIR
Sbjct: 241 KRRARAPGKGCYAQDRVLTVEERTSAGYHAVRQKAGRLRSQSSGSAAQAAGRGSLEAGIR 300
Query: 301 PEGVFLEFLSSVPQKAHTSYEI 322
PEGVFLEFLSSVPQKAHTSYEI
Sbjct: 301 PEGVFLEFLSSVPQKAHTSYEI 322
>gi|113424119 PREDICTED: similar to FRAS1 related extracellular
matrix protein 2 [Homo sapiens]
Length = 322
Score = 645 bits (1664), Expect = 0.0
Identities = 322/322 (100%), Positives = 322/322 (100%)
Query: 1 MKRPGPCDSSRDSTSQVLRDLRGRESWAGDRRAQPTPSPRERASPSSPPSQPPPGPLPLL 60
MKRPGPCDSSRDSTSQVLRDLRGRESWAGDRRAQPTPSPRERASPSSPPSQPPPGPLPLL
Sbjct: 1 MKRPGPCDSSRDSTSQVLRDLRGRESWAGDRRAQPTPSPRERASPSSPPSQPPPGPLPLL 60
Query: 61 LVSLVQARVPEHENELHSGDYAPPGSSVEIAKIFQADVVPRLQEGAVIVLGSTAHAVLAA 120
LVSLVQARVPEHENELHSGDYAPPGSSVEIAKIFQADVVPRLQEGAVIVLGSTAHAVLAA
Sbjct: 61 LVSLVQARVPEHENELHSGDYAPPGSSVEIAKIFQADVVPRLQEGAVIVLGSTAHAVLAA 120
Query: 121 PPYSIIKTSETENPCILELMDDVLYEAVEELRLRLIKFGETKFNVTEPKEPGESVVIRIP 180
PPYSIIKTSETENPCILELMDDVLYEAVEELRLRLIKFGETKFNVTEPKEPGESVVIRIP
Sbjct: 121 PPYSIIKTSETENPCILELMDDVLYEAVEELRLRLIKFGETKFNVTEPKEPGESVVIRIP 180
Query: 181 VIHQGDTSKVSIRQEALCSDGGRESVGATLLLWTPTCPRRGRAQTRRRGRHVGQRGPLPW 240
VIHQGDTSKVSIRQEALCSDGGRESVGATLLLWTPTCPRRGRAQTRRRGRHVGQRGPLPW
Sbjct: 181 VIHQGDTSKVSIRQEALCSDGGRESVGATLLLWTPTCPRRGRAQTRRRGRHVGQRGPLPW 240
Query: 241 KRRARAPGKGCYAQDRVLTVEERTSAGYHAVRQKAGRLRSQSSGSAAQAAGRGSLEAGIR 300
KRRARAPGKGCYAQDRVLTVEERTSAGYHAVRQKAGRLRSQSSGSAAQAAGRGSLEAGIR
Sbjct: 241 KRRARAPGKGCYAQDRVLTVEERTSAGYHAVRQKAGRLRSQSSGSAAQAAGRGSLEAGIR 300
Query: 301 PEGVFLEFLSSVPQKAHTSYEI 322
PEGVFLEFLSSVPQKAHTSYEI
Sbjct: 301 PEGVFLEFLSSVPQKAHTSYEI 322
>gi|169206056 PREDICTED: similar to FRAS1 related extracellular
matrix protein 2 [Homo sapiens]
Length = 322
Score = 639 bits (1647), Expect = 0.0
Identities = 320/322 (99%), Positives = 320/322 (99%)
Query: 1 MKRPGPCDSSRDSTSQVLRDLRGRESWAGDRRAQPTPSPRERASPSSPPSQPPPGPLPLL 60
MKRPGPCDSSRDSTSQVLRDLRGRESWAGDRRAQPTPSPRERASPSSPPSQPPPGPLPLL
Sbjct: 1 MKRPGPCDSSRDSTSQVLRDLRGRESWAGDRRAQPTPSPRERASPSSPPSQPPPGPLPLL 60
Query: 61 LVSLVQARVPEHENELHSGDYAPPGSSVEIAKIFQADVVPRLQEGAVIVLGSTAHAVLAA 120
LVSLVQARVPEHENELHSGDYAPPGSSVEIAKIFQADVVPRLQEGAVIVLGSTAHAVLAA
Sbjct: 61 LVSLVQARVPEHENELHSGDYAPPGSSVEIAKIFQADVVPRLQEGAVIVLGSTAHAVLAA 120
Query: 121 PPYSIIKTSETENPCILELMDDVLYEAVEELRLRLIKFGETKFNVTEPKEPGESVVIRIP 180
PPYSIIKTSETENPCILELMDDVLYEAVEELRLRLIKFGETKFNVTEPKEPGESVVIRIP
Sbjct: 121 PPYSIIKTSETENPCILELMDDVLYEAVEELRLRLIKFGETKFNVTEPKEPGESVVIRIP 180
Query: 181 VIHQGDTSKVSIRQEALCSDGGRESVGATLLLWTPTCPRRGRAQTRRRGRHVGQRGPLPW 240
VIHQGDTSKVSIRQEALCSDGGRESVGATLLLWT TCPRRGRAQTRRRGRHVGQRGPLPW
Sbjct: 181 VIHQGDTSKVSIRQEALCSDGGRESVGATLLLWTSTCPRRGRAQTRRRGRHVGQRGPLPW 240
Query: 241 KRRARAPGKGCYAQDRVLTVEERTSAGYHAVRQKAGRLRSQSSGSAAQAAGRGSLEAGIR 300
KRRARAPGKGC AQDRVLTVEERTSAGYHAVRQKAGRLRSQSSGSAAQAAGRGSLEAGIR
Sbjct: 241 KRRARAPGKGCCAQDRVLTVEERTSAGYHAVRQKAGRLRSQSSGSAAQAAGRGSLEAGIR 300
Query: 301 PEGVFLEFLSSVPQKAHTSYEI 322
PEGVFLEFLSSVPQKAHTSYEI
Sbjct: 301 PEGVFLEFLSSVPQKAHTSYEI 322
>gi|79749430 FRAS1-related extracellular matrix protein 2 precursor
[Homo sapiens]
Length = 3169
Score = 99.0 bits (245), Expect = 5e-21
Identities = 58/94 (61%), Positives = 59/94 (62%), Gaps = 31/94 (32%)
Query: 130 ETENPCILELMDDVLYEAVEELRLRL-------------------------------IKF 158
ETE PCILELMDDVLYE VEELRL L IKF
Sbjct: 2194 ETEKPCILELMDDVLYEEVEELRLVLGTPQSNSPFGAAVGEQNETLIRIRDDADKTVIKF 2253
Query: 159 GETKFNVTEPKEPGESVVIRIPVIHQGDTSKVSI 192
GETKF+VTEPKEPGESVVIRIPVI QGDTSKVSI
Sbjct: 2254 GETKFSVTEPKEPGESVVIRIPVIRQGDTSKVSI 2287
>gi|55770854 N-methyl-D-aspartate receptor subunit 2C precursor
[Homo sapiens]
Length = 1233
Score = 40.4 bits (93), Expect = 0.002
Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 14 TSQVLRDLRGRESWAGDRRA---QPTPSPRERASPSSPPSQPPPGPLP 58
+S + R R E+W G RRA P P+PR SP P PPP P P
Sbjct: 910 SSSLDRATRTIENWGGGRRAPPPSPCPTPRSGPSPCLPTPDPPPEPSP 957
>gi|225690497 tight junction associated protein 1 isoform b [Homo
sapiens]
Length = 547
Score = 37.0 bits (84), Expect = 0.024
Identities = 29/81 (35%), Positives = 37/81 (45%), Gaps = 9/81 (11%)
Query: 29 GDRRAQPTPSPRERAS-PSSPPSQPPPGPLPLLLVSLVQARVPEHENELHSG-----DYA 82
G RA+P+P P AS +SP QP P PL L S + E+ L S D
Sbjct: 356 GSERARPSPVPSTPASAQASPHHQPSPAPLTL---SAPASSASSEEDLLVSWQRAFVDRT 412
Query: 83 PPGSSVEIAKIFQADVVPRLQ 103
PP ++V F D +P LQ
Sbjct: 413 PPPAAVAQRTAFGRDALPELQ 433
>gi|225690495 tight junction associated protein 1 isoform b [Homo
sapiens]
Length = 547
Score = 37.0 bits (84), Expect = 0.024
Identities = 29/81 (35%), Positives = 37/81 (45%), Gaps = 9/81 (11%)
Query: 29 GDRRAQPTPSPRERAS-PSSPPSQPPPGPLPLLLVSLVQARVPEHENELHSG-----DYA 82
G RA+P+P P AS +SP QP P PL L S + E+ L S D
Sbjct: 356 GSERARPSPVPSTPASAQASPHHQPSPAPLTL---SAPASSASSEEDLLVSWQRAFVDRT 412
Query: 83 PPGSSVEIAKIFQADVVPRLQ 103
PP ++V F D +P LQ
Sbjct: 413 PPPAAVAQRTAFGRDALPELQ 433
>gi|225690493 tight junction associated protein 1 isoform b [Homo
sapiens]
Length = 547
Score = 37.0 bits (84), Expect = 0.024
Identities = 29/81 (35%), Positives = 37/81 (45%), Gaps = 9/81 (11%)
Query: 29 GDRRAQPTPSPRERAS-PSSPPSQPPPGPLPLLLVSLVQARVPEHENELHSG-----DYA 82
G RA+P+P P AS +SP QP P PL L S + E+ L S D
Sbjct: 356 GSERARPSPVPSTPASAQASPHHQPSPAPLTL---SAPASSASSEEDLLVSWQRAFVDRT 412
Query: 83 PPGSSVEIAKIFQADVVPRLQ 103
PP ++V F D +P LQ
Sbjct: 413 PPPAAVAQRTAFGRDALPELQ 433
>gi|225690491 tight junction associated protein 1 isoform b [Homo
sapiens]
Length = 547
Score = 37.0 bits (84), Expect = 0.024
Identities = 29/81 (35%), Positives = 37/81 (45%), Gaps = 9/81 (11%)
Query: 29 GDRRAQPTPSPRERAS-PSSPPSQPPPGPLPLLLVSLVQARVPEHENELHSG-----DYA 82
G RA+P+P P AS +SP QP P PL L S + E+ L S D
Sbjct: 356 GSERARPSPVPSTPASAQASPHHQPSPAPLTL---SAPASSASSEEDLLVSWQRAFVDRT 412
Query: 83 PPGSSVEIAKIFQADVVPRLQ 103
PP ++V F D +P LQ
Sbjct: 413 PPPAAVAQRTAFGRDALPELQ 433
>gi|225690489 tight junction associated protein 1 isoform a [Homo
sapiens]
Length = 557
Score = 37.0 bits (84), Expect = 0.024
Identities = 29/81 (35%), Positives = 37/81 (45%), Gaps = 9/81 (11%)
Query: 29 GDRRAQPTPSPRERAS-PSSPPSQPPPGPLPLLLVSLVQARVPEHENELHSG-----DYA 82
G RA+P+P P AS +SP QP P PL L S + E+ L S D
Sbjct: 366 GSERARPSPVPSTPASAQASPHHQPSPAPLTL---SAPASSASSEEDLLVSWQRAFVDRT 422
Query: 83 PPGSSVEIAKIFQADVVPRLQ 103
PP ++V F D +P LQ
Sbjct: 423 PPPAAVAQRTAFGRDALPELQ 443
>gi|225690487 tight junction associated protein 1 isoform a [Homo
sapiens]
Length = 557
Score = 37.0 bits (84), Expect = 0.024
Identities = 29/81 (35%), Positives = 37/81 (45%), Gaps = 9/81 (11%)
Query: 29 GDRRAQPTPSPRERAS-PSSPPSQPPPGPLPLLLVSLVQARVPEHENELHSG-----DYA 82
G RA+P+P P AS +SP QP P PL L S + E+ L S D
Sbjct: 366 GSERARPSPVPSTPASAQASPHHQPSPAPLTL---SAPASSASSEEDLLVSWQRAFVDRT 422
Query: 83 PPGSSVEIAKIFQADVVPRLQ 103
PP ++V F D +P LQ
Sbjct: 423 PPPAAVAQRTAFGRDALPELQ 443
>gi|224926824 SH2B adaptor protein 1 isoform 2 [Homo sapiens]
Length = 671
Score = 34.7 bits (78), Expect = 0.12
Identities = 14/20 (70%), Positives = 15/20 (75%)
Query: 37 PSPRERASPSSPPSQPPPGP 56
PSP + ASPSSPP PPP P
Sbjct: 5 PSPEDGASPSSPPLPPPPPP 24
>gi|224926830 SH2B adaptor protein 1 isoform 3 [Homo sapiens]
Length = 683
Score = 34.7 bits (78), Expect = 0.12
Identities = 14/20 (70%), Positives = 15/20 (75%)
Query: 37 PSPRERASPSSPPSQPPPGP 56
PSP + ASPSSPP PPP P
Sbjct: 5 PSPEDGASPSSPPLPPPPPP 24
>gi|224926828 SH2B adaptor protein 1 isoform 2 [Homo sapiens]
Length = 671
Score = 34.7 bits (78), Expect = 0.12
Identities = 14/20 (70%), Positives = 15/20 (75%)
Query: 37 PSPRERASPSSPPSQPPPGP 56
PSP + ASPSSPP PPP P
Sbjct: 5 PSPEDGASPSSPPLPPPPPP 24
>gi|224926826 SH2B adaptor protein 1 isoform 1 [Homo sapiens]
Length = 756
Score = 34.7 bits (78), Expect = 0.12
Identities = 14/20 (70%), Positives = 15/20 (75%)
Query: 37 PSPRERASPSSPPSQPPPGP 56
PSP + ASPSSPP PPP P
Sbjct: 5 PSPEDGASPSSPPLPPPPPP 24
>gi|224926822 SH2B adaptor protein 1 isoform 2 [Homo sapiens]
Length = 671
Score = 34.7 bits (78), Expect = 0.12
Identities = 14/20 (70%), Positives = 15/20 (75%)
Query: 37 PSPRERASPSSPPSQPPPGP 56
PSP + ASPSSPP PPP P
Sbjct: 5 PSPEDGASPSSPPLPPPPPP 24
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 34.3 bits (77), Expect = 0.15
Identities = 15/29 (51%), Positives = 15/29 (51%)
Query: 30 DRRAQPTPSPRERASPSSPPSQPPPGPLP 58
D AQP P P P PP PPP PLP
Sbjct: 2400 DISAQPPPPPPPPPPPPPPPPPPPPPPLP 2428
Score = 28.5 bits (62), Expect = 8.4
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 1 MKRPGPCDSSRDSTSQVLRDLRGRESWAGDRRAQPTPSPRERASPSSPPSQPPPGPLP 58
+ PGP SS + + ++ +E ++AQ SP+ A P S PPGP P
Sbjct: 831 ISHPGP--SSESKGQKQVDPVQKKEE---PKKAQTKMSPKPDAKPMPKGSPTPPGPRP 883
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 34.3 bits (77), Expect = 0.15
Identities = 15/29 (51%), Positives = 15/29 (51%)
Query: 30 DRRAQPTPSPRERASPSSPPSQPPPGPLP 58
D AQP P P P PP PPP PLP
Sbjct: 2400 DISAQPPPPPPPPPPPPPPPPPPPPPPLP 2428
Score = 28.5 bits (62), Expect = 8.4
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 1 MKRPGPCDSSRDSTSQVLRDLRGRESWAGDRRAQPTPSPRERASPSSPPSQPPPGPLP 58
+ PGP SS + + ++ +E ++AQ SP+ A P S PPGP P
Sbjct: 831 ISHPGP--SSESKGQKQVDPVQKKEE---PKKAQTKMSPKPDAKPMPKGSPTPPGPRP 883
>gi|110225353 sprouty-related, EVH1 domain containing 3 isoform a
[Homo sapiens]
Length = 410
Score = 34.3 bits (77), Expect = 0.15
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 37 PSPRERASPSSPPSQPPPGPLP 58
P+P A+P +PP++PPPGP P
Sbjct: 259 PAPLTEAAPPAPPARPPPGPGP 280
>gi|12669915 E2F transcription factor 4 [Homo sapiens]
Length = 413
Score = 33.9 bits (76), Expect = 0.20
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Query: 21 LRGRESWAGDRRAQPTPSPRERASPSSPPSQPPPGPLPLLLVSLVQARVPEHENELHSGD 80
L +E+W+ A P P P + S S PPP P P +L Q++ N
Sbjct: 194 LVNKEAWSSPPVAVPVPPPEDLLQSPSAVSTPPPLPKP----ALAQSQEASRPNSPQLTP 249
Query: 81 YAPPGSS 87
A PGS+
Sbjct: 250 TAVPGSA 256
>gi|116006967 neuregulin 1 isoform GGF2 [Homo sapiens]
Length = 422
Score = 33.5 bits (75), Expect = 0.26
Identities = 26/89 (29%), Positives = 35/89 (39%), Gaps = 3/89 (3%)
Query: 27 WAGDRRAQPTPSPRERASPSSPPSQPPPGPLPLLLVSLVQARVPEHENELHSGDYAPPGS 86
W R P PR + S+ S PP LPLLL+ A P + AP G+
Sbjct: 3 WRRAPRRSGRPGPRAQRPGSAARSSPPLPLLPLLLLLGTAALAP---GAAAGNEAAPAGA 59
Query: 87 SVEIAKIFQADVVPRLQEGAVIVLGSTAH 115
SV + V L + A +V+ H
Sbjct: 60 SVCYSSPPSVGSVQELAQRAAVVIEGKVH 88
>gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]
Length = 819
Score = 33.5 bits (75), Expect = 0.26
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 12/75 (16%)
Query: 218 PRRGRAQTRRRGRHVGQRGPLPWKRRARAPGKGCYAQDRVLTVEERTSAGYHAVRQKAGR 277
PRR RA++R G G PW+RR + P G ++ G A + +G
Sbjct: 689 PRRRRAKSRGDGGQNAAVGINPWQRRGKKPRLG------------KSRGGGGAKSRGSGG 736
Query: 278 LRSQSSGSAAQAAGR 292
+S+ SG A +G+
Sbjct: 737 AKSRGSGGAKSRSGK 751
>gi|91208423 thyroid receptor-interacting protein 6 [Homo sapiens]
Length = 476
Score = 33.5 bits (75), Expect = 0.26
Identities = 26/66 (39%), Positives = 32/66 (48%), Gaps = 10/66 (15%)
Query: 3 RPGPCDSSRDSTSQVLRDL---RGRESWAGDRRAQ-PTPSPRERA-----SPSSP-PSQP 52
RPG D+ D S L +L RG S DR+A P P P R +P+SP P+ P
Sbjct: 89 RPGSLDAEIDLLSSTLAELNGGRGHASRRPDRQAYEPPPPPAYRTGSLKPNPASPLPASP 148
Query: 53 PPGPLP 58
GP P
Sbjct: 149 YGGPTP 154
>gi|112380630 leiomodin 1 (smooth muscle) [Homo sapiens]
Length = 600
Score = 33.5 bits (75), Expect = 0.26
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 32 RAQPTPSPRERASPSSPPSQPPPGPLPLLLVSLVQARVPEHENELHSGDYAPP 84
+ P SP++ +P++PP PPP PL++ +L + P + ++ GD P
Sbjct: 518 KPSPKNSPKKGGAPAAPPPPPPPLAPPLIMENLKNSLSPATQRKM--GDKVLP 568
Score = 28.9 bits (63), Expect = 6.4
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 35 PTPSPRERASPSSPPSQPPPGPLPL 59
P PSP+ P+ PPP P PL
Sbjct: 517 PKPSPKNSPKKGGAPAAPPPPPPPL 541
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 33.1 bits (74), Expect = 0.34
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 35 PTPSPRERASPSSPPSQPPPGPLP 58
P P+P ++ P PP PPPGP P
Sbjct: 26 PPPAPPQQQPPPPPPPAPPPGPGP 49
Score = 30.0 bits (66), Expect = 2.9
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 20 DLRGRESWAGDRR-AQPTPSPRERASPSSPPSQPPPGPLP 58
D RG G+ A P P P P+ P QPPP P P
Sbjct: 2 DARGGGGRPGESPGATPAPGPPPPPPPAPPQQQPPPPPPP 41
>gi|118402590 myosin XV [Homo sapiens]
Length = 3530
Score = 33.1 bits (74), Expect = 0.34
Identities = 25/85 (29%), Positives = 32/85 (37%), Gaps = 8/85 (9%)
Query: 8 DSSRDSTSQVLRDLRGRESWAGDRRAQPTPSPRERA--------SPSSPPSQPPPGPLPL 59
D + T VLR + R + D R P P P R SP PP P GP P
Sbjct: 618 DPEKPGTPIVLRRAQPRARSSNDARRPPAPQPAPRTLSHWSALLSPPVPPRPPSSGPPPA 677
Query: 60 LLVSLVQARVPEHENELHSGDYAPP 84
+S + +P + S PP
Sbjct: 678 PPLSPALSGLPRPASPYGSLRRHPP 702
>gi|197276594 RNA binding motif protein 20 [Homo sapiens]
Length = 1227
Score = 33.1 bits (74), Expect = 0.34
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 3/102 (2%)
Query: 32 RAQPTPS-PRERASPSSPPSQPPP--GPLPLLLVSLVQARVPEHENELHSGDYAPPGSSV 88
RA P PS PR P PP PPP LP ++ + + + + P +S+
Sbjct: 30 RASPAPSGPRGMQQPPPPPQPPPPPQAGLPQIIQNAAKLLDKNPFSVSNPNPLLPSPASL 89
Query: 89 EIAKIFQADVVPRLQEGAVIVLGSTAHAVLAAPPYSIIKTSE 130
++A++ + RL+ V +TA A + S + S+
Sbjct: 90 QLAQLQAQLTLHRLKLAQTAVTNNTAAATVLNQVLSKVAMSQ 131
>gi|4505195 mitogen-activated protein kinase kinase kinase 11 [Homo
sapiens]
Length = 847
Score = 33.1 bits (74), Expect = 0.34
Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 34 QPTPSPRERASPSSPPSQPPPGPLPLLL---VSLVQARVPEHENELHSGDYAPP 84
+P PSP S +P S P P PL L L V A+ P E E G +PP
Sbjct: 689 EPPPSPLICFSLKTPDSPPTPAPLLLDLGIPVGQRSAKSPRREEEPRGGTVSPP 742
>gi|239754512 PREDICTED: hypothetical protein [Homo sapiens]
Length = 556
Score = 32.7 bits (73), Expect = 0.44
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 31 RRAQPTPSPRERASPSSPPSQPPPGPLP 58
R A P P+P R P PP PPP P P
Sbjct: 434 RDAPPGPTPARRGLPRPPPPPPPPLPPP 461
>gi|239749073 PREDICTED: hypothetical protein [Homo sapiens]
Length = 884
Score = 32.7 bits (73), Expect = 0.44
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 31 RRAQPTPSPRERASPSSPPSQPPPGPLP 58
R A P P+P R P PP PPP P P
Sbjct: 762 RDAPPGPTPARRGLPRPPPPPPPPLPPP 789
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.132 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,752,966
Number of Sequences: 37866
Number of extensions: 805412
Number of successful extensions: 8886
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 216
Number of HSP's that attempted gapping in prelim test: 7261
Number of HSP's gapped (non-prelim): 1508
length of query: 322
length of database: 18,247,518
effective HSP length: 102
effective length of query: 220
effective length of database: 14,385,186
effective search space: 3164740920
effective search space used: 3164740920
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.