BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|113424119 PREDICTED: similar to FRAS1 related extracellular matrix protein 2 [Homo sapiens] (322 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|113424309 PREDICTED: similar to FRAS1 related extracellular m... 645 0.0 gi|113424119 PREDICTED: similar to FRAS1 related extracellular m... 645 0.0 gi|169206056 PREDICTED: similar to FRAS1 related extracellular m... 639 0.0 gi|79749430 FRAS1-related extracellular matrix protein 2 precurs... 99 5e-21 gi|55770854 N-methyl-D-aspartate receptor subunit 2C precursor [... 40 0.002 gi|225690497 tight junction associated protein 1 isoform b [Homo... 37 0.024 gi|225690495 tight junction associated protein 1 isoform b [Homo... 37 0.024 gi|225690493 tight junction associated protein 1 isoform b [Homo... 37 0.024 gi|225690491 tight junction associated protein 1 isoform b [Homo... 37 0.024 gi|225690489 tight junction associated protein 1 isoform a [Homo... 37 0.024 gi|225690487 tight junction associated protein 1 isoform a [Homo... 37 0.024 gi|224926824 SH2B adaptor protein 1 isoform 2 [Homo sapiens] 35 0.12 gi|224926830 SH2B adaptor protein 1 isoform 3 [Homo sapiens] 35 0.12 gi|224926828 SH2B adaptor protein 1 isoform 2 [Homo sapiens] 35 0.12 gi|224926826 SH2B adaptor protein 1 isoform 1 [Homo sapiens] 35 0.12 gi|224926822 SH2B adaptor protein 1 isoform 2 [Homo sapiens] 35 0.12 gi|150170670 piccolo isoform 2 [Homo sapiens] 34 0.15 gi|150378539 piccolo isoform 1 [Homo sapiens] 34 0.15 gi|110225353 sprouty-related, EVH1 domain containing 3 isoform a... 34 0.15 gi|12669915 E2F transcription factor 4 [Homo sapiens] 34 0.20 gi|116006967 neuregulin 1 isoform GGF2 [Homo sapiens] 33 0.26 gi|239758013 PREDICTED: hypothetical protein [Homo sapiens] 33 0.26 gi|91208423 thyroid receptor-interacting protein 6 [Homo sapiens] 33 0.26 gi|112380630 leiomodin 1 (smooth muscle) [Homo sapiens] 33 0.26 gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 33 0.34 gi|118402590 myosin XV [Homo sapiens] 33 0.34 gi|197276594 RNA binding motif protein 20 [Homo sapiens] 33 0.34 gi|4505195 mitogen-activated protein kinase kinase kinase 11 [Ho... 33 0.34 gi|239754512 PREDICTED: hypothetical protein [Homo sapiens] 33 0.44 gi|239749073 PREDICTED: hypothetical protein [Homo sapiens] 33 0.44 >gi|113424309 PREDICTED: similar to FRAS1 related extracellular matrix protein 2 [Homo sapiens] Length = 322 Score = 645 bits (1664), Expect = 0.0 Identities = 322/322 (100%), Positives = 322/322 (100%) Query: 1 MKRPGPCDSSRDSTSQVLRDLRGRESWAGDRRAQPTPSPRERASPSSPPSQPPPGPLPLL 60 MKRPGPCDSSRDSTSQVLRDLRGRESWAGDRRAQPTPSPRERASPSSPPSQPPPGPLPLL Sbjct: 1 MKRPGPCDSSRDSTSQVLRDLRGRESWAGDRRAQPTPSPRERASPSSPPSQPPPGPLPLL 60 Query: 61 LVSLVQARVPEHENELHSGDYAPPGSSVEIAKIFQADVVPRLQEGAVIVLGSTAHAVLAA 120 LVSLVQARVPEHENELHSGDYAPPGSSVEIAKIFQADVVPRLQEGAVIVLGSTAHAVLAA Sbjct: 61 LVSLVQARVPEHENELHSGDYAPPGSSVEIAKIFQADVVPRLQEGAVIVLGSTAHAVLAA 120 Query: 121 PPYSIIKTSETENPCILELMDDVLYEAVEELRLRLIKFGETKFNVTEPKEPGESVVIRIP 180 PPYSIIKTSETENPCILELMDDVLYEAVEELRLRLIKFGETKFNVTEPKEPGESVVIRIP Sbjct: 121 PPYSIIKTSETENPCILELMDDVLYEAVEELRLRLIKFGETKFNVTEPKEPGESVVIRIP 180 Query: 181 VIHQGDTSKVSIRQEALCSDGGRESVGATLLLWTPTCPRRGRAQTRRRGRHVGQRGPLPW 240 VIHQGDTSKVSIRQEALCSDGGRESVGATLLLWTPTCPRRGRAQTRRRGRHVGQRGPLPW Sbjct: 181 VIHQGDTSKVSIRQEALCSDGGRESVGATLLLWTPTCPRRGRAQTRRRGRHVGQRGPLPW 240 Query: 241 KRRARAPGKGCYAQDRVLTVEERTSAGYHAVRQKAGRLRSQSSGSAAQAAGRGSLEAGIR 300 KRRARAPGKGCYAQDRVLTVEERTSAGYHAVRQKAGRLRSQSSGSAAQAAGRGSLEAGIR Sbjct: 241 KRRARAPGKGCYAQDRVLTVEERTSAGYHAVRQKAGRLRSQSSGSAAQAAGRGSLEAGIR 300 Query: 301 PEGVFLEFLSSVPQKAHTSYEI 322 PEGVFLEFLSSVPQKAHTSYEI Sbjct: 301 PEGVFLEFLSSVPQKAHTSYEI 322 >gi|113424119 PREDICTED: similar to FRAS1 related extracellular matrix protein 2 [Homo sapiens] Length = 322 Score = 645 bits (1664), Expect = 0.0 Identities = 322/322 (100%), Positives = 322/322 (100%) Query: 1 MKRPGPCDSSRDSTSQVLRDLRGRESWAGDRRAQPTPSPRERASPSSPPSQPPPGPLPLL 60 MKRPGPCDSSRDSTSQVLRDLRGRESWAGDRRAQPTPSPRERASPSSPPSQPPPGPLPLL Sbjct: 1 MKRPGPCDSSRDSTSQVLRDLRGRESWAGDRRAQPTPSPRERASPSSPPSQPPPGPLPLL 60 Query: 61 LVSLVQARVPEHENELHSGDYAPPGSSVEIAKIFQADVVPRLQEGAVIVLGSTAHAVLAA 120 LVSLVQARVPEHENELHSGDYAPPGSSVEIAKIFQADVVPRLQEGAVIVLGSTAHAVLAA Sbjct: 61 LVSLVQARVPEHENELHSGDYAPPGSSVEIAKIFQADVVPRLQEGAVIVLGSTAHAVLAA 120 Query: 121 PPYSIIKTSETENPCILELMDDVLYEAVEELRLRLIKFGETKFNVTEPKEPGESVVIRIP 180 PPYSIIKTSETENPCILELMDDVLYEAVEELRLRLIKFGETKFNVTEPKEPGESVVIRIP Sbjct: 121 PPYSIIKTSETENPCILELMDDVLYEAVEELRLRLIKFGETKFNVTEPKEPGESVVIRIP 180 Query: 181 VIHQGDTSKVSIRQEALCSDGGRESVGATLLLWTPTCPRRGRAQTRRRGRHVGQRGPLPW 240 VIHQGDTSKVSIRQEALCSDGGRESVGATLLLWTPTCPRRGRAQTRRRGRHVGQRGPLPW Sbjct: 181 VIHQGDTSKVSIRQEALCSDGGRESVGATLLLWTPTCPRRGRAQTRRRGRHVGQRGPLPW 240 Query: 241 KRRARAPGKGCYAQDRVLTVEERTSAGYHAVRQKAGRLRSQSSGSAAQAAGRGSLEAGIR 300 KRRARAPGKGCYAQDRVLTVEERTSAGYHAVRQKAGRLRSQSSGSAAQAAGRGSLEAGIR Sbjct: 241 KRRARAPGKGCYAQDRVLTVEERTSAGYHAVRQKAGRLRSQSSGSAAQAAGRGSLEAGIR 300 Query: 301 PEGVFLEFLSSVPQKAHTSYEI 322 PEGVFLEFLSSVPQKAHTSYEI Sbjct: 301 PEGVFLEFLSSVPQKAHTSYEI 322 >gi|169206056 PREDICTED: similar to FRAS1 related extracellular matrix protein 2 [Homo sapiens] Length = 322 Score = 639 bits (1647), Expect = 0.0 Identities = 320/322 (99%), Positives = 320/322 (99%) Query: 1 MKRPGPCDSSRDSTSQVLRDLRGRESWAGDRRAQPTPSPRERASPSSPPSQPPPGPLPLL 60 MKRPGPCDSSRDSTSQVLRDLRGRESWAGDRRAQPTPSPRERASPSSPPSQPPPGPLPLL Sbjct: 1 MKRPGPCDSSRDSTSQVLRDLRGRESWAGDRRAQPTPSPRERASPSSPPSQPPPGPLPLL 60 Query: 61 LVSLVQARVPEHENELHSGDYAPPGSSVEIAKIFQADVVPRLQEGAVIVLGSTAHAVLAA 120 LVSLVQARVPEHENELHSGDYAPPGSSVEIAKIFQADVVPRLQEGAVIVLGSTAHAVLAA Sbjct: 61 LVSLVQARVPEHENELHSGDYAPPGSSVEIAKIFQADVVPRLQEGAVIVLGSTAHAVLAA 120 Query: 121 PPYSIIKTSETENPCILELMDDVLYEAVEELRLRLIKFGETKFNVTEPKEPGESVVIRIP 180 PPYSIIKTSETENPCILELMDDVLYEAVEELRLRLIKFGETKFNVTEPKEPGESVVIRIP Sbjct: 121 PPYSIIKTSETENPCILELMDDVLYEAVEELRLRLIKFGETKFNVTEPKEPGESVVIRIP 180 Query: 181 VIHQGDTSKVSIRQEALCSDGGRESVGATLLLWTPTCPRRGRAQTRRRGRHVGQRGPLPW 240 VIHQGDTSKVSIRQEALCSDGGRESVGATLLLWT TCPRRGRAQTRRRGRHVGQRGPLPW Sbjct: 181 VIHQGDTSKVSIRQEALCSDGGRESVGATLLLWTSTCPRRGRAQTRRRGRHVGQRGPLPW 240 Query: 241 KRRARAPGKGCYAQDRVLTVEERTSAGYHAVRQKAGRLRSQSSGSAAQAAGRGSLEAGIR 300 KRRARAPGKGC AQDRVLTVEERTSAGYHAVRQKAGRLRSQSSGSAAQAAGRGSLEAGIR Sbjct: 241 KRRARAPGKGCCAQDRVLTVEERTSAGYHAVRQKAGRLRSQSSGSAAQAAGRGSLEAGIR 300 Query: 301 PEGVFLEFLSSVPQKAHTSYEI 322 PEGVFLEFLSSVPQKAHTSYEI Sbjct: 301 PEGVFLEFLSSVPQKAHTSYEI 322 >gi|79749430 FRAS1-related extracellular matrix protein 2 precursor [Homo sapiens] Length = 3169 Score = 99.0 bits (245), Expect = 5e-21 Identities = 58/94 (61%), Positives = 59/94 (62%), Gaps = 31/94 (32%) Query: 130 ETENPCILELMDDVLYEAVEELRLRL-------------------------------IKF 158 ETE PCILELMDDVLYE VEELRL L IKF Sbjct: 2194 ETEKPCILELMDDVLYEEVEELRLVLGTPQSNSPFGAAVGEQNETLIRIRDDADKTVIKF 2253 Query: 159 GETKFNVTEPKEPGESVVIRIPVIHQGDTSKVSI 192 GETKF+VTEPKEPGESVVIRIPVI QGDTSKVSI Sbjct: 2254 GETKFSVTEPKEPGESVVIRIPVIRQGDTSKVSI 2287 >gi|55770854 N-methyl-D-aspartate receptor subunit 2C precursor [Homo sapiens] Length = 1233 Score = 40.4 bits (93), Expect = 0.002 Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 3/48 (6%) Query: 14 TSQVLRDLRGRESWAGDRRA---QPTPSPRERASPSSPPSQPPPGPLP 58 +S + R R E+W G RRA P P+PR SP P PPP P P Sbjct: 910 SSSLDRATRTIENWGGGRRAPPPSPCPTPRSGPSPCLPTPDPPPEPSP 957 >gi|225690497 tight junction associated protein 1 isoform b [Homo sapiens] Length = 547 Score = 37.0 bits (84), Expect = 0.024 Identities = 29/81 (35%), Positives = 37/81 (45%), Gaps = 9/81 (11%) Query: 29 GDRRAQPTPSPRERAS-PSSPPSQPPPGPLPLLLVSLVQARVPEHENELHSG-----DYA 82 G RA+P+P P AS +SP QP P PL L S + E+ L S D Sbjct: 356 GSERARPSPVPSTPASAQASPHHQPSPAPLTL---SAPASSASSEEDLLVSWQRAFVDRT 412 Query: 83 PPGSSVEIAKIFQADVVPRLQ 103 PP ++V F D +P LQ Sbjct: 413 PPPAAVAQRTAFGRDALPELQ 433 >gi|225690495 tight junction associated protein 1 isoform b [Homo sapiens] Length = 547 Score = 37.0 bits (84), Expect = 0.024 Identities = 29/81 (35%), Positives = 37/81 (45%), Gaps = 9/81 (11%) Query: 29 GDRRAQPTPSPRERAS-PSSPPSQPPPGPLPLLLVSLVQARVPEHENELHSG-----DYA 82 G RA+P+P P AS +SP QP P PL L S + E+ L S D Sbjct: 356 GSERARPSPVPSTPASAQASPHHQPSPAPLTL---SAPASSASSEEDLLVSWQRAFVDRT 412 Query: 83 PPGSSVEIAKIFQADVVPRLQ 103 PP ++V F D +P LQ Sbjct: 413 PPPAAVAQRTAFGRDALPELQ 433 >gi|225690493 tight junction associated protein 1 isoform b [Homo sapiens] Length = 547 Score = 37.0 bits (84), Expect = 0.024 Identities = 29/81 (35%), Positives = 37/81 (45%), Gaps = 9/81 (11%) Query: 29 GDRRAQPTPSPRERAS-PSSPPSQPPPGPLPLLLVSLVQARVPEHENELHSG-----DYA 82 G RA+P+P P AS +SP QP P PL L S + E+ L S D Sbjct: 356 GSERARPSPVPSTPASAQASPHHQPSPAPLTL---SAPASSASSEEDLLVSWQRAFVDRT 412 Query: 83 PPGSSVEIAKIFQADVVPRLQ 103 PP ++V F D +P LQ Sbjct: 413 PPPAAVAQRTAFGRDALPELQ 433 >gi|225690491 tight junction associated protein 1 isoform b [Homo sapiens] Length = 547 Score = 37.0 bits (84), Expect = 0.024 Identities = 29/81 (35%), Positives = 37/81 (45%), Gaps = 9/81 (11%) Query: 29 GDRRAQPTPSPRERAS-PSSPPSQPPPGPLPLLLVSLVQARVPEHENELHSG-----DYA 82 G RA+P+P P AS +SP QP P PL L S + E+ L S D Sbjct: 356 GSERARPSPVPSTPASAQASPHHQPSPAPLTL---SAPASSASSEEDLLVSWQRAFVDRT 412 Query: 83 PPGSSVEIAKIFQADVVPRLQ 103 PP ++V F D +P LQ Sbjct: 413 PPPAAVAQRTAFGRDALPELQ 433 >gi|225690489 tight junction associated protein 1 isoform a [Homo sapiens] Length = 557 Score = 37.0 bits (84), Expect = 0.024 Identities = 29/81 (35%), Positives = 37/81 (45%), Gaps = 9/81 (11%) Query: 29 GDRRAQPTPSPRERAS-PSSPPSQPPPGPLPLLLVSLVQARVPEHENELHSG-----DYA 82 G RA+P+P P AS +SP QP P PL L S + E+ L S D Sbjct: 366 GSERARPSPVPSTPASAQASPHHQPSPAPLTL---SAPASSASSEEDLLVSWQRAFVDRT 422 Query: 83 PPGSSVEIAKIFQADVVPRLQ 103 PP ++V F D +P LQ Sbjct: 423 PPPAAVAQRTAFGRDALPELQ 443 >gi|225690487 tight junction associated protein 1 isoform a [Homo sapiens] Length = 557 Score = 37.0 bits (84), Expect = 0.024 Identities = 29/81 (35%), Positives = 37/81 (45%), Gaps = 9/81 (11%) Query: 29 GDRRAQPTPSPRERAS-PSSPPSQPPPGPLPLLLVSLVQARVPEHENELHSG-----DYA 82 G RA+P+P P AS +SP QP P PL L S + E+ L S D Sbjct: 366 GSERARPSPVPSTPASAQASPHHQPSPAPLTL---SAPASSASSEEDLLVSWQRAFVDRT 422 Query: 83 PPGSSVEIAKIFQADVVPRLQ 103 PP ++V F D +P LQ Sbjct: 423 PPPAAVAQRTAFGRDALPELQ 443 >gi|224926824 SH2B adaptor protein 1 isoform 2 [Homo sapiens] Length = 671 Score = 34.7 bits (78), Expect = 0.12 Identities = 14/20 (70%), Positives = 15/20 (75%) Query: 37 PSPRERASPSSPPSQPPPGP 56 PSP + ASPSSPP PPP P Sbjct: 5 PSPEDGASPSSPPLPPPPPP 24 >gi|224926830 SH2B adaptor protein 1 isoform 3 [Homo sapiens] Length = 683 Score = 34.7 bits (78), Expect = 0.12 Identities = 14/20 (70%), Positives = 15/20 (75%) Query: 37 PSPRERASPSSPPSQPPPGP 56 PSP + ASPSSPP PPP P Sbjct: 5 PSPEDGASPSSPPLPPPPPP 24 >gi|224926828 SH2B adaptor protein 1 isoform 2 [Homo sapiens] Length = 671 Score = 34.7 bits (78), Expect = 0.12 Identities = 14/20 (70%), Positives = 15/20 (75%) Query: 37 PSPRERASPSSPPSQPPPGP 56 PSP + ASPSSPP PPP P Sbjct: 5 PSPEDGASPSSPPLPPPPPP 24 >gi|224926826 SH2B adaptor protein 1 isoform 1 [Homo sapiens] Length = 756 Score = 34.7 bits (78), Expect = 0.12 Identities = 14/20 (70%), Positives = 15/20 (75%) Query: 37 PSPRERASPSSPPSQPPPGP 56 PSP + ASPSSPP PPP P Sbjct: 5 PSPEDGASPSSPPLPPPPPP 24 >gi|224926822 SH2B adaptor protein 1 isoform 2 [Homo sapiens] Length = 671 Score = 34.7 bits (78), Expect = 0.12 Identities = 14/20 (70%), Positives = 15/20 (75%) Query: 37 PSPRERASPSSPPSQPPPGP 56 PSP + ASPSSPP PPP P Sbjct: 5 PSPEDGASPSSPPLPPPPPP 24 >gi|150170670 piccolo isoform 2 [Homo sapiens] Length = 4935 Score = 34.3 bits (77), Expect = 0.15 Identities = 15/29 (51%), Positives = 15/29 (51%) Query: 30 DRRAQPTPSPRERASPSSPPSQPPPGPLP 58 D AQP P P P PP PPP PLP Sbjct: 2400 DISAQPPPPPPPPPPPPPPPPPPPPPPLP 2428 Score = 28.5 bits (62), Expect = 8.4 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 5/58 (8%) Query: 1 MKRPGPCDSSRDSTSQVLRDLRGRESWAGDRRAQPTPSPRERASPSSPPSQPPPGPLP 58 + PGP SS + + ++ +E ++AQ SP+ A P S PPGP P Sbjct: 831 ISHPGP--SSESKGQKQVDPVQKKEE---PKKAQTKMSPKPDAKPMPKGSPTPPGPRP 883 >gi|150378539 piccolo isoform 1 [Homo sapiens] Length = 5142 Score = 34.3 bits (77), Expect = 0.15 Identities = 15/29 (51%), Positives = 15/29 (51%) Query: 30 DRRAQPTPSPRERASPSSPPSQPPPGPLP 58 D AQP P P P PP PPP PLP Sbjct: 2400 DISAQPPPPPPPPPPPPPPPPPPPPPPLP 2428 Score = 28.5 bits (62), Expect = 8.4 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 5/58 (8%) Query: 1 MKRPGPCDSSRDSTSQVLRDLRGRESWAGDRRAQPTPSPRERASPSSPPSQPPPGPLP 58 + PGP SS + + ++ +E ++AQ SP+ A P S PPGP P Sbjct: 831 ISHPGP--SSESKGQKQVDPVQKKEE---PKKAQTKMSPKPDAKPMPKGSPTPPGPRP 883 >gi|110225353 sprouty-related, EVH1 domain containing 3 isoform a [Homo sapiens] Length = 410 Score = 34.3 bits (77), Expect = 0.15 Identities = 12/22 (54%), Positives = 17/22 (77%) Query: 37 PSPRERASPSSPPSQPPPGPLP 58 P+P A+P +PP++PPPGP P Sbjct: 259 PAPLTEAAPPAPPARPPPGPGP 280 >gi|12669915 E2F transcription factor 4 [Homo sapiens] Length = 413 Score = 33.9 bits (76), Expect = 0.20 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 4/67 (5%) Query: 21 LRGRESWAGDRRAQPTPSPRERASPSSPPSQPPPGPLPLLLVSLVQARVPEHENELHSGD 80 L +E+W+ A P P P + S S PPP P P +L Q++ N Sbjct: 194 LVNKEAWSSPPVAVPVPPPEDLLQSPSAVSTPPPLPKP----ALAQSQEASRPNSPQLTP 249 Query: 81 YAPPGSS 87 A PGS+ Sbjct: 250 TAVPGSA 256 >gi|116006967 neuregulin 1 isoform GGF2 [Homo sapiens] Length = 422 Score = 33.5 bits (75), Expect = 0.26 Identities = 26/89 (29%), Positives = 35/89 (39%), Gaps = 3/89 (3%) Query: 27 WAGDRRAQPTPSPRERASPSSPPSQPPPGPLPLLLVSLVQARVPEHENELHSGDYAPPGS 86 W R P PR + S+ S PP LPLLL+ A P + AP G+ Sbjct: 3 WRRAPRRSGRPGPRAQRPGSAARSSPPLPLLPLLLLLGTAALAP---GAAAGNEAAPAGA 59 Query: 87 SVEIAKIFQADVVPRLQEGAVIVLGSTAH 115 SV + V L + A +V+ H Sbjct: 60 SVCYSSPPSVGSVQELAQRAAVVIEGKVH 88 >gi|239758013 PREDICTED: hypothetical protein [Homo sapiens] Length = 819 Score = 33.5 bits (75), Expect = 0.26 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 12/75 (16%) Query: 218 PRRGRAQTRRRGRHVGQRGPLPWKRRARAPGKGCYAQDRVLTVEERTSAGYHAVRQKAGR 277 PRR RA++R G G PW+RR + P G ++ G A + +G Sbjct: 689 PRRRRAKSRGDGGQNAAVGINPWQRRGKKPRLG------------KSRGGGGAKSRGSGG 736 Query: 278 LRSQSSGSAAQAAGR 292 +S+ SG A +G+ Sbjct: 737 AKSRGSGGAKSRSGK 751 >gi|91208423 thyroid receptor-interacting protein 6 [Homo sapiens] Length = 476 Score = 33.5 bits (75), Expect = 0.26 Identities = 26/66 (39%), Positives = 32/66 (48%), Gaps = 10/66 (15%) Query: 3 RPGPCDSSRDSTSQVLRDL---RGRESWAGDRRAQ-PTPSPRERA-----SPSSP-PSQP 52 RPG D+ D S L +L RG S DR+A P P P R +P+SP P+ P Sbjct: 89 RPGSLDAEIDLLSSTLAELNGGRGHASRRPDRQAYEPPPPPAYRTGSLKPNPASPLPASP 148 Query: 53 PPGPLP 58 GP P Sbjct: 149 YGGPTP 154 >gi|112380630 leiomodin 1 (smooth muscle) [Homo sapiens] Length = 600 Score = 33.5 bits (75), Expect = 0.26 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 2/53 (3%) Query: 32 RAQPTPSPRERASPSSPPSQPPPGPLPLLLVSLVQARVPEHENELHSGDYAPP 84 + P SP++ +P++PP PPP PL++ +L + P + ++ GD P Sbjct: 518 KPSPKNSPKKGGAPAAPPPPPPPLAPPLIMENLKNSLSPATQRKM--GDKVLP 568 Score = 28.9 bits (63), Expect = 6.4 Identities = 11/25 (44%), Positives = 13/25 (52%) Query: 35 PTPSPRERASPSSPPSQPPPGPLPL 59 P PSP+ P+ PPP P PL Sbjct: 517 PKPSPKNSPKKGGAPAAPPPPPPPL 541 >gi|156071470 hyperpolarization activated cyclic nucleotide-gated potassium channel 2 [Homo sapiens] Length = 889 Score = 33.1 bits (74), Expect = 0.34 Identities = 12/24 (50%), Positives = 15/24 (62%) Query: 35 PTPSPRERASPSSPPSQPPPGPLP 58 P P+P ++ P PP PPPGP P Sbjct: 26 PPPAPPQQQPPPPPPPAPPPGPGP 49 Score = 30.0 bits (66), Expect = 2.9 Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 1/40 (2%) Query: 20 DLRGRESWAGDRR-AQPTPSPRERASPSSPPSQPPPGPLP 58 D RG G+ A P P P P+ P QPPP P P Sbjct: 2 DARGGGGRPGESPGATPAPGPPPPPPPAPPQQQPPPPPPP 41 >gi|118402590 myosin XV [Homo sapiens] Length = 3530 Score = 33.1 bits (74), Expect = 0.34 Identities = 25/85 (29%), Positives = 32/85 (37%), Gaps = 8/85 (9%) Query: 8 DSSRDSTSQVLRDLRGRESWAGDRRAQPTPSPRERA--------SPSSPPSQPPPGPLPL 59 D + T VLR + R + D R P P P R SP PP P GP P Sbjct: 618 DPEKPGTPIVLRRAQPRARSSNDARRPPAPQPAPRTLSHWSALLSPPVPPRPPSSGPPPA 677 Query: 60 LLVSLVQARVPEHENELHSGDYAPP 84 +S + +P + S PP Sbjct: 678 PPLSPALSGLPRPASPYGSLRRHPP 702 >gi|197276594 RNA binding motif protein 20 [Homo sapiens] Length = 1227 Score = 33.1 bits (74), Expect = 0.34 Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 3/102 (2%) Query: 32 RAQPTPS-PRERASPSSPPSQPPP--GPLPLLLVSLVQARVPEHENELHSGDYAPPGSSV 88 RA P PS PR P PP PPP LP ++ + + + + P +S+ Sbjct: 30 RASPAPSGPRGMQQPPPPPQPPPPPQAGLPQIIQNAAKLLDKNPFSVSNPNPLLPSPASL 89 Query: 89 EIAKIFQADVVPRLQEGAVIVLGSTAHAVLAAPPYSIIKTSE 130 ++A++ + RL+ V +TA A + S + S+ Sbjct: 90 QLAQLQAQLTLHRLKLAQTAVTNNTAAATVLNQVLSKVAMSQ 131 >gi|4505195 mitogen-activated protein kinase kinase kinase 11 [Homo sapiens] Length = 847 Score = 33.1 bits (74), Expect = 0.34 Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 3/54 (5%) Query: 34 QPTPSPRERASPSSPPSQPPPGPLPLLL---VSLVQARVPEHENELHSGDYAPP 84 +P PSP S +P S P P PL L L V A+ P E E G +PP Sbjct: 689 EPPPSPLICFSLKTPDSPPTPAPLLLDLGIPVGQRSAKSPRREEEPRGGTVSPP 742 >gi|239754512 PREDICTED: hypothetical protein [Homo sapiens] Length = 556 Score = 32.7 bits (73), Expect = 0.44 Identities = 14/28 (50%), Positives = 15/28 (53%) Query: 31 RRAQPTPSPRERASPSSPPSQPPPGPLP 58 R A P P+P R P PP PPP P P Sbjct: 434 RDAPPGPTPARRGLPRPPPPPPPPLPPP 461 >gi|239749073 PREDICTED: hypothetical protein [Homo sapiens] Length = 884 Score = 32.7 bits (73), Expect = 0.44 Identities = 14/28 (50%), Positives = 15/28 (53%) Query: 31 RRAQPTPSPRERASPSSPPSQPPPGPLP 58 R A P P+P R P PP PPP P P Sbjct: 762 RDAPPGPTPARRGLPRPPPPPPPPLPPP 789 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.315 0.132 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 14,752,966 Number of Sequences: 37866 Number of extensions: 805412 Number of successful extensions: 8886 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 131 Number of HSP's successfully gapped in prelim test: 216 Number of HSP's that attempted gapping in prelim test: 7261 Number of HSP's gapped (non-prelim): 1508 length of query: 322 length of database: 18,247,518 effective HSP length: 102 effective length of query: 220 effective length of database: 14,385,186 effective search space: 3164740920 effective search space used: 3164740920 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.