Guide to the Human Genome
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Search of human proteins with 113424119

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|113424119 PREDICTED: similar to FRAS1 related extracellular
matrix protein 2 [Homo sapiens]
         (322 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|113424309 PREDICTED: similar to FRAS1 related extracellular m...   645   0.0  
gi|113424119 PREDICTED: similar to FRAS1 related extracellular m...   645   0.0  
gi|169206056 PREDICTED: similar to FRAS1 related extracellular m...   639   0.0  
gi|79749430 FRAS1-related extracellular matrix protein 2 precurs...    99   5e-21
gi|55770854 N-methyl-D-aspartate receptor subunit 2C precursor [...    40   0.002
gi|225690497 tight junction associated protein 1 isoform b [Homo...    37   0.024
gi|225690495 tight junction associated protein 1 isoform b [Homo...    37   0.024
gi|225690493 tight junction associated protein 1 isoform b [Homo...    37   0.024
gi|225690491 tight junction associated protein 1 isoform b [Homo...    37   0.024
gi|225690489 tight junction associated protein 1 isoform a [Homo...    37   0.024
gi|225690487 tight junction associated protein 1 isoform a [Homo...    37   0.024
gi|224926824 SH2B adaptor protein 1 isoform 2 [Homo sapiens]           35   0.12 
gi|224926830 SH2B adaptor protein 1 isoform 3 [Homo sapiens]           35   0.12 
gi|224926828 SH2B adaptor protein 1 isoform 2 [Homo sapiens]           35   0.12 
gi|224926826 SH2B adaptor protein 1 isoform 1 [Homo sapiens]           35   0.12 
gi|224926822 SH2B adaptor protein 1 isoform 2 [Homo sapiens]           35   0.12 
gi|150170670 piccolo isoform 2 [Homo sapiens]                          34   0.15 
gi|150378539 piccolo isoform 1 [Homo sapiens]                          34   0.15 
gi|110225353 sprouty-related, EVH1 domain containing 3 isoform a...    34   0.15 
gi|12669915 E2F transcription factor 4 [Homo sapiens]                  34   0.20 
gi|116006967 neuregulin 1 isoform GGF2 [Homo sapiens]                  33   0.26 
gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]            33   0.26 
gi|91208423 thyroid receptor-interacting protein 6 [Homo sapiens]      33   0.26 
gi|112380630 leiomodin 1 (smooth muscle) [Homo sapiens]                33   0.26 
gi|156071470 hyperpolarization activated cyclic nucleotide-gated...    33   0.34 
gi|118402590 myosin XV [Homo sapiens]                                  33   0.34 
gi|197276594 RNA binding motif protein 20 [Homo sapiens]               33   0.34 
gi|4505195 mitogen-activated protein kinase kinase kinase 11 [Ho...    33   0.34 
gi|239754512 PREDICTED: hypothetical protein [Homo sapiens]            33   0.44 
gi|239749073 PREDICTED: hypothetical protein [Homo sapiens]            33   0.44 

>gi|113424309 PREDICTED: similar to FRAS1 related extracellular
           matrix protein 2 [Homo sapiens]
          Length = 322

 Score =  645 bits (1664), Expect = 0.0
 Identities = 322/322 (100%), Positives = 322/322 (100%)

Query: 1   MKRPGPCDSSRDSTSQVLRDLRGRESWAGDRRAQPTPSPRERASPSSPPSQPPPGPLPLL 60
           MKRPGPCDSSRDSTSQVLRDLRGRESWAGDRRAQPTPSPRERASPSSPPSQPPPGPLPLL
Sbjct: 1   MKRPGPCDSSRDSTSQVLRDLRGRESWAGDRRAQPTPSPRERASPSSPPSQPPPGPLPLL 60

Query: 61  LVSLVQARVPEHENELHSGDYAPPGSSVEIAKIFQADVVPRLQEGAVIVLGSTAHAVLAA 120
           LVSLVQARVPEHENELHSGDYAPPGSSVEIAKIFQADVVPRLQEGAVIVLGSTAHAVLAA
Sbjct: 61  LVSLVQARVPEHENELHSGDYAPPGSSVEIAKIFQADVVPRLQEGAVIVLGSTAHAVLAA 120

Query: 121 PPYSIIKTSETENPCILELMDDVLYEAVEELRLRLIKFGETKFNVTEPKEPGESVVIRIP 180
           PPYSIIKTSETENPCILELMDDVLYEAVEELRLRLIKFGETKFNVTEPKEPGESVVIRIP
Sbjct: 121 PPYSIIKTSETENPCILELMDDVLYEAVEELRLRLIKFGETKFNVTEPKEPGESVVIRIP 180

Query: 181 VIHQGDTSKVSIRQEALCSDGGRESVGATLLLWTPTCPRRGRAQTRRRGRHVGQRGPLPW 240
           VIHQGDTSKVSIRQEALCSDGGRESVGATLLLWTPTCPRRGRAQTRRRGRHVGQRGPLPW
Sbjct: 181 VIHQGDTSKVSIRQEALCSDGGRESVGATLLLWTPTCPRRGRAQTRRRGRHVGQRGPLPW 240

Query: 241 KRRARAPGKGCYAQDRVLTVEERTSAGYHAVRQKAGRLRSQSSGSAAQAAGRGSLEAGIR 300
           KRRARAPGKGCYAQDRVLTVEERTSAGYHAVRQKAGRLRSQSSGSAAQAAGRGSLEAGIR
Sbjct: 241 KRRARAPGKGCYAQDRVLTVEERTSAGYHAVRQKAGRLRSQSSGSAAQAAGRGSLEAGIR 300

Query: 301 PEGVFLEFLSSVPQKAHTSYEI 322
           PEGVFLEFLSSVPQKAHTSYEI
Sbjct: 301 PEGVFLEFLSSVPQKAHTSYEI 322


>gi|113424119 PREDICTED: similar to FRAS1 related extracellular
           matrix protein 2 [Homo sapiens]
          Length = 322

 Score =  645 bits (1664), Expect = 0.0
 Identities = 322/322 (100%), Positives = 322/322 (100%)

Query: 1   MKRPGPCDSSRDSTSQVLRDLRGRESWAGDRRAQPTPSPRERASPSSPPSQPPPGPLPLL 60
           MKRPGPCDSSRDSTSQVLRDLRGRESWAGDRRAQPTPSPRERASPSSPPSQPPPGPLPLL
Sbjct: 1   MKRPGPCDSSRDSTSQVLRDLRGRESWAGDRRAQPTPSPRERASPSSPPSQPPPGPLPLL 60

Query: 61  LVSLVQARVPEHENELHSGDYAPPGSSVEIAKIFQADVVPRLQEGAVIVLGSTAHAVLAA 120
           LVSLVQARVPEHENELHSGDYAPPGSSVEIAKIFQADVVPRLQEGAVIVLGSTAHAVLAA
Sbjct: 61  LVSLVQARVPEHENELHSGDYAPPGSSVEIAKIFQADVVPRLQEGAVIVLGSTAHAVLAA 120

Query: 121 PPYSIIKTSETENPCILELMDDVLYEAVEELRLRLIKFGETKFNVTEPKEPGESVVIRIP 180
           PPYSIIKTSETENPCILELMDDVLYEAVEELRLRLIKFGETKFNVTEPKEPGESVVIRIP
Sbjct: 121 PPYSIIKTSETENPCILELMDDVLYEAVEELRLRLIKFGETKFNVTEPKEPGESVVIRIP 180

Query: 181 VIHQGDTSKVSIRQEALCSDGGRESVGATLLLWTPTCPRRGRAQTRRRGRHVGQRGPLPW 240
           VIHQGDTSKVSIRQEALCSDGGRESVGATLLLWTPTCPRRGRAQTRRRGRHVGQRGPLPW
Sbjct: 181 VIHQGDTSKVSIRQEALCSDGGRESVGATLLLWTPTCPRRGRAQTRRRGRHVGQRGPLPW 240

Query: 241 KRRARAPGKGCYAQDRVLTVEERTSAGYHAVRQKAGRLRSQSSGSAAQAAGRGSLEAGIR 300
           KRRARAPGKGCYAQDRVLTVEERTSAGYHAVRQKAGRLRSQSSGSAAQAAGRGSLEAGIR
Sbjct: 241 KRRARAPGKGCYAQDRVLTVEERTSAGYHAVRQKAGRLRSQSSGSAAQAAGRGSLEAGIR 300

Query: 301 PEGVFLEFLSSVPQKAHTSYEI 322
           PEGVFLEFLSSVPQKAHTSYEI
Sbjct: 301 PEGVFLEFLSSVPQKAHTSYEI 322


>gi|169206056 PREDICTED: similar to FRAS1 related extracellular
           matrix protein 2 [Homo sapiens]
          Length = 322

 Score =  639 bits (1647), Expect = 0.0
 Identities = 320/322 (99%), Positives = 320/322 (99%)

Query: 1   MKRPGPCDSSRDSTSQVLRDLRGRESWAGDRRAQPTPSPRERASPSSPPSQPPPGPLPLL 60
           MKRPGPCDSSRDSTSQVLRDLRGRESWAGDRRAQPTPSPRERASPSSPPSQPPPGPLPLL
Sbjct: 1   MKRPGPCDSSRDSTSQVLRDLRGRESWAGDRRAQPTPSPRERASPSSPPSQPPPGPLPLL 60

Query: 61  LVSLVQARVPEHENELHSGDYAPPGSSVEIAKIFQADVVPRLQEGAVIVLGSTAHAVLAA 120
           LVSLVQARVPEHENELHSGDYAPPGSSVEIAKIFQADVVPRLQEGAVIVLGSTAHAVLAA
Sbjct: 61  LVSLVQARVPEHENELHSGDYAPPGSSVEIAKIFQADVVPRLQEGAVIVLGSTAHAVLAA 120

Query: 121 PPYSIIKTSETENPCILELMDDVLYEAVEELRLRLIKFGETKFNVTEPKEPGESVVIRIP 180
           PPYSIIKTSETENPCILELMDDVLYEAVEELRLRLIKFGETKFNVTEPKEPGESVVIRIP
Sbjct: 121 PPYSIIKTSETENPCILELMDDVLYEAVEELRLRLIKFGETKFNVTEPKEPGESVVIRIP 180

Query: 181 VIHQGDTSKVSIRQEALCSDGGRESVGATLLLWTPTCPRRGRAQTRRRGRHVGQRGPLPW 240
           VIHQGDTSKVSIRQEALCSDGGRESVGATLLLWT TCPRRGRAQTRRRGRHVGQRGPLPW
Sbjct: 181 VIHQGDTSKVSIRQEALCSDGGRESVGATLLLWTSTCPRRGRAQTRRRGRHVGQRGPLPW 240

Query: 241 KRRARAPGKGCYAQDRVLTVEERTSAGYHAVRQKAGRLRSQSSGSAAQAAGRGSLEAGIR 300
           KRRARAPGKGC AQDRVLTVEERTSAGYHAVRQKAGRLRSQSSGSAAQAAGRGSLEAGIR
Sbjct: 241 KRRARAPGKGCCAQDRVLTVEERTSAGYHAVRQKAGRLRSQSSGSAAQAAGRGSLEAGIR 300

Query: 301 PEGVFLEFLSSVPQKAHTSYEI 322
           PEGVFLEFLSSVPQKAHTSYEI
Sbjct: 301 PEGVFLEFLSSVPQKAHTSYEI 322


>gi|79749430 FRAS1-related extracellular matrix protein 2 precursor
            [Homo sapiens]
          Length = 3169

 Score = 99.0 bits (245), Expect = 5e-21
 Identities = 58/94 (61%), Positives = 59/94 (62%), Gaps = 31/94 (32%)

Query: 130  ETENPCILELMDDVLYEAVEELRLRL-------------------------------IKF 158
            ETE PCILELMDDVLYE VEELRL L                               IKF
Sbjct: 2194 ETEKPCILELMDDVLYEEVEELRLVLGTPQSNSPFGAAVGEQNETLIRIRDDADKTVIKF 2253

Query: 159  GETKFNVTEPKEPGESVVIRIPVIHQGDTSKVSI 192
            GETKF+VTEPKEPGESVVIRIPVI QGDTSKVSI
Sbjct: 2254 GETKFSVTEPKEPGESVVIRIPVIRQGDTSKVSI 2287


>gi|55770854 N-methyl-D-aspartate receptor subunit 2C precursor
           [Homo sapiens]
          Length = 1233

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 3/48 (6%)

Query: 14  TSQVLRDLRGRESWAGDRRA---QPTPSPRERASPSSPPSQPPPGPLP 58
           +S + R  R  E+W G RRA    P P+PR   SP  P   PPP P P
Sbjct: 910 SSSLDRATRTIENWGGGRRAPPPSPCPTPRSGPSPCLPTPDPPPEPSP 957


>gi|225690497 tight junction associated protein 1 isoform b [Homo
           sapiens]
          Length = 547

 Score = 37.0 bits (84), Expect = 0.024
 Identities = 29/81 (35%), Positives = 37/81 (45%), Gaps = 9/81 (11%)

Query: 29  GDRRAQPTPSPRERAS-PSSPPSQPPPGPLPLLLVSLVQARVPEHENELHSG-----DYA 82
           G  RA+P+P P   AS  +SP  QP P PL L   S   +     E+ L S      D  
Sbjct: 356 GSERARPSPVPSTPASAQASPHHQPSPAPLTL---SAPASSASSEEDLLVSWQRAFVDRT 412

Query: 83  PPGSSVEIAKIFQADVVPRLQ 103
           PP ++V     F  D +P LQ
Sbjct: 413 PPPAAVAQRTAFGRDALPELQ 433


>gi|225690495 tight junction associated protein 1 isoform b [Homo
           sapiens]
          Length = 547

 Score = 37.0 bits (84), Expect = 0.024
 Identities = 29/81 (35%), Positives = 37/81 (45%), Gaps = 9/81 (11%)

Query: 29  GDRRAQPTPSPRERAS-PSSPPSQPPPGPLPLLLVSLVQARVPEHENELHSG-----DYA 82
           G  RA+P+P P   AS  +SP  QP P PL L   S   +     E+ L S      D  
Sbjct: 356 GSERARPSPVPSTPASAQASPHHQPSPAPLTL---SAPASSASSEEDLLVSWQRAFVDRT 412

Query: 83  PPGSSVEIAKIFQADVVPRLQ 103
           PP ++V     F  D +P LQ
Sbjct: 413 PPPAAVAQRTAFGRDALPELQ 433


>gi|225690493 tight junction associated protein 1 isoform b [Homo
           sapiens]
          Length = 547

 Score = 37.0 bits (84), Expect = 0.024
 Identities = 29/81 (35%), Positives = 37/81 (45%), Gaps = 9/81 (11%)

Query: 29  GDRRAQPTPSPRERAS-PSSPPSQPPPGPLPLLLVSLVQARVPEHENELHSG-----DYA 82
           G  RA+P+P P   AS  +SP  QP P PL L   S   +     E+ L S      D  
Sbjct: 356 GSERARPSPVPSTPASAQASPHHQPSPAPLTL---SAPASSASSEEDLLVSWQRAFVDRT 412

Query: 83  PPGSSVEIAKIFQADVVPRLQ 103
           PP ++V     F  D +P LQ
Sbjct: 413 PPPAAVAQRTAFGRDALPELQ 433


>gi|225690491 tight junction associated protein 1 isoform b [Homo
           sapiens]
          Length = 547

 Score = 37.0 bits (84), Expect = 0.024
 Identities = 29/81 (35%), Positives = 37/81 (45%), Gaps = 9/81 (11%)

Query: 29  GDRRAQPTPSPRERAS-PSSPPSQPPPGPLPLLLVSLVQARVPEHENELHSG-----DYA 82
           G  RA+P+P P   AS  +SP  QP P PL L   S   +     E+ L S      D  
Sbjct: 356 GSERARPSPVPSTPASAQASPHHQPSPAPLTL---SAPASSASSEEDLLVSWQRAFVDRT 412

Query: 83  PPGSSVEIAKIFQADVVPRLQ 103
           PP ++V     F  D +P LQ
Sbjct: 413 PPPAAVAQRTAFGRDALPELQ 433


>gi|225690489 tight junction associated protein 1 isoform a [Homo
           sapiens]
          Length = 557

 Score = 37.0 bits (84), Expect = 0.024
 Identities = 29/81 (35%), Positives = 37/81 (45%), Gaps = 9/81 (11%)

Query: 29  GDRRAQPTPSPRERAS-PSSPPSQPPPGPLPLLLVSLVQARVPEHENELHSG-----DYA 82
           G  RA+P+P P   AS  +SP  QP P PL L   S   +     E+ L S      D  
Sbjct: 366 GSERARPSPVPSTPASAQASPHHQPSPAPLTL---SAPASSASSEEDLLVSWQRAFVDRT 422

Query: 83  PPGSSVEIAKIFQADVVPRLQ 103
           PP ++V     F  D +P LQ
Sbjct: 423 PPPAAVAQRTAFGRDALPELQ 443


>gi|225690487 tight junction associated protein 1 isoform a [Homo
           sapiens]
          Length = 557

 Score = 37.0 bits (84), Expect = 0.024
 Identities = 29/81 (35%), Positives = 37/81 (45%), Gaps = 9/81 (11%)

Query: 29  GDRRAQPTPSPRERAS-PSSPPSQPPPGPLPLLLVSLVQARVPEHENELHSG-----DYA 82
           G  RA+P+P P   AS  +SP  QP P PL L   S   +     E+ L S      D  
Sbjct: 366 GSERARPSPVPSTPASAQASPHHQPSPAPLTL---SAPASSASSEEDLLVSWQRAFVDRT 422

Query: 83  PPGSSVEIAKIFQADVVPRLQ 103
           PP ++V     F  D +P LQ
Sbjct: 423 PPPAAVAQRTAFGRDALPELQ 443


>gi|224926824 SH2B adaptor protein 1 isoform 2 [Homo sapiens]
          Length = 671

 Score = 34.7 bits (78), Expect = 0.12
 Identities = 14/20 (70%), Positives = 15/20 (75%)

Query: 37 PSPRERASPSSPPSQPPPGP 56
          PSP + ASPSSPP  PPP P
Sbjct: 5  PSPEDGASPSSPPLPPPPPP 24


>gi|224926830 SH2B adaptor protein 1 isoform 3 [Homo sapiens]
          Length = 683

 Score = 34.7 bits (78), Expect = 0.12
 Identities = 14/20 (70%), Positives = 15/20 (75%)

Query: 37 PSPRERASPSSPPSQPPPGP 56
          PSP + ASPSSPP  PPP P
Sbjct: 5  PSPEDGASPSSPPLPPPPPP 24


>gi|224926828 SH2B adaptor protein 1 isoform 2 [Homo sapiens]
          Length = 671

 Score = 34.7 bits (78), Expect = 0.12
 Identities = 14/20 (70%), Positives = 15/20 (75%)

Query: 37 PSPRERASPSSPPSQPPPGP 56
          PSP + ASPSSPP  PPP P
Sbjct: 5  PSPEDGASPSSPPLPPPPPP 24


>gi|224926826 SH2B adaptor protein 1 isoform 1 [Homo sapiens]
          Length = 756

 Score = 34.7 bits (78), Expect = 0.12
 Identities = 14/20 (70%), Positives = 15/20 (75%)

Query: 37 PSPRERASPSSPPSQPPPGP 56
          PSP + ASPSSPP  PPP P
Sbjct: 5  PSPEDGASPSSPPLPPPPPP 24


>gi|224926822 SH2B adaptor protein 1 isoform 2 [Homo sapiens]
          Length = 671

 Score = 34.7 bits (78), Expect = 0.12
 Identities = 14/20 (70%), Positives = 15/20 (75%)

Query: 37 PSPRERASPSSPPSQPPPGP 56
          PSP + ASPSSPP  PPP P
Sbjct: 5  PSPEDGASPSSPPLPPPPPP 24


>gi|150170670 piccolo isoform 2 [Homo sapiens]
          Length = 4935

 Score = 34.3 bits (77), Expect = 0.15
 Identities = 15/29 (51%), Positives = 15/29 (51%)

Query: 30   DRRAQPTPSPRERASPSSPPSQPPPGPLP 58
            D  AQP P P     P  PP  PPP PLP
Sbjct: 2400 DISAQPPPPPPPPPPPPPPPPPPPPPPLP 2428



 Score = 28.5 bits (62), Expect = 8.4
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 5/58 (8%)

Query: 1   MKRPGPCDSSRDSTSQVLRDLRGRESWAGDRRAQPTPSPRERASPSSPPSQPPPGPLP 58
           +  PGP  SS     + +  ++ +E     ++AQ   SP+  A P    S  PPGP P
Sbjct: 831 ISHPGP--SSESKGQKQVDPVQKKEE---PKKAQTKMSPKPDAKPMPKGSPTPPGPRP 883


>gi|150378539 piccolo isoform 1 [Homo sapiens]
          Length = 5142

 Score = 34.3 bits (77), Expect = 0.15
 Identities = 15/29 (51%), Positives = 15/29 (51%)

Query: 30   DRRAQPTPSPRERASPSSPPSQPPPGPLP 58
            D  AQP P P     P  PP  PPP PLP
Sbjct: 2400 DISAQPPPPPPPPPPPPPPPPPPPPPPLP 2428



 Score = 28.5 bits (62), Expect = 8.4
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 5/58 (8%)

Query: 1   MKRPGPCDSSRDSTSQVLRDLRGRESWAGDRRAQPTPSPRERASPSSPPSQPPPGPLP 58
           +  PGP  SS     + +  ++ +E     ++AQ   SP+  A P    S  PPGP P
Sbjct: 831 ISHPGP--SSESKGQKQVDPVQKKEE---PKKAQTKMSPKPDAKPMPKGSPTPPGPRP 883


>gi|110225353 sprouty-related, EVH1 domain containing 3 isoform a
           [Homo sapiens]
          Length = 410

 Score = 34.3 bits (77), Expect = 0.15
 Identities = 12/22 (54%), Positives = 17/22 (77%)

Query: 37  PSPRERASPSSPPSQPPPGPLP 58
           P+P   A+P +PP++PPPGP P
Sbjct: 259 PAPLTEAAPPAPPARPPPGPGP 280


>gi|12669915 E2F transcription factor 4 [Homo sapiens]
          Length = 413

 Score = 33.9 bits (76), Expect = 0.20
 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 4/67 (5%)

Query: 21  LRGRESWAGDRRAQPTPSPRERASPSSPPSQPPPGPLPLLLVSLVQARVPEHENELHSGD 80
           L  +E+W+    A P P P +     S  S PPP P P    +L Q++     N      
Sbjct: 194 LVNKEAWSSPPVAVPVPPPEDLLQSPSAVSTPPPLPKP----ALAQSQEASRPNSPQLTP 249

Query: 81  YAPPGSS 87
            A PGS+
Sbjct: 250 TAVPGSA 256


>gi|116006967 neuregulin 1 isoform GGF2 [Homo sapiens]
          Length = 422

 Score = 33.5 bits (75), Expect = 0.26
 Identities = 26/89 (29%), Positives = 35/89 (39%), Gaps = 3/89 (3%)

Query: 27  WAGDRRAQPTPSPRERASPSSPPSQPPPGPLPLLLVSLVQARVPEHENELHSGDYAPPGS 86
           W    R    P PR +   S+  S PP   LPLLL+    A  P         + AP G+
Sbjct: 3   WRRAPRRSGRPGPRAQRPGSAARSSPPLPLLPLLLLLGTAALAP---GAAAGNEAAPAGA 59

Query: 87  SVEIAKIFQADVVPRLQEGAVIVLGSTAH 115
           SV  +       V  L + A +V+    H
Sbjct: 60  SVCYSSPPSVGSVQELAQRAAVVIEGKVH 88


>gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 819

 Score = 33.5 bits (75), Expect = 0.26
 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 12/75 (16%)

Query: 218 PRRGRAQTRRRGRHVGQRGPLPWKRRARAPGKGCYAQDRVLTVEERTSAGYHAVRQKAGR 277
           PRR RA++R  G      G  PW+RR + P  G            ++  G  A  + +G 
Sbjct: 689 PRRRRAKSRGDGGQNAAVGINPWQRRGKKPRLG------------KSRGGGGAKSRGSGG 736

Query: 278 LRSQSSGSAAQAAGR 292
            +S+ SG A   +G+
Sbjct: 737 AKSRGSGGAKSRSGK 751


>gi|91208423 thyroid receptor-interacting protein 6 [Homo sapiens]
          Length = 476

 Score = 33.5 bits (75), Expect = 0.26
 Identities = 26/66 (39%), Positives = 32/66 (48%), Gaps = 10/66 (15%)

Query: 3   RPGPCDSSRDSTSQVLRDL---RGRESWAGDRRAQ-PTPSPRERA-----SPSSP-PSQP 52
           RPG  D+  D  S  L +L   RG  S   DR+A  P P P  R      +P+SP P+ P
Sbjct: 89  RPGSLDAEIDLLSSTLAELNGGRGHASRRPDRQAYEPPPPPAYRTGSLKPNPASPLPASP 148

Query: 53  PPGPLP 58
             GP P
Sbjct: 149 YGGPTP 154


>gi|112380630 leiomodin 1 (smooth muscle) [Homo sapiens]
          Length = 600

 Score = 33.5 bits (75), Expect = 0.26
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 32  RAQPTPSPRERASPSSPPSQPPPGPLPLLLVSLVQARVPEHENELHSGDYAPP 84
           +  P  SP++  +P++PP  PPP   PL++ +L  +  P  + ++  GD   P
Sbjct: 518 KPSPKNSPKKGGAPAAPPPPPPPLAPPLIMENLKNSLSPATQRKM--GDKVLP 568



 Score = 28.9 bits (63), Expect = 6.4
 Identities = 11/25 (44%), Positives = 13/25 (52%)

Query: 35  PTPSPRERASPSSPPSQPPPGPLPL 59
           P PSP+        P+ PPP P PL
Sbjct: 517 PKPSPKNSPKKGGAPAAPPPPPPPL 541


>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
          potassium channel 2 [Homo sapiens]
          Length = 889

 Score = 33.1 bits (74), Expect = 0.34
 Identities = 12/24 (50%), Positives = 15/24 (62%)

Query: 35 PTPSPRERASPSSPPSQPPPGPLP 58
          P P+P ++  P  PP  PPPGP P
Sbjct: 26 PPPAPPQQQPPPPPPPAPPPGPGP 49



 Score = 30.0 bits (66), Expect = 2.9
 Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 20 DLRGRESWAGDRR-AQPTPSPRERASPSSPPSQPPPGPLP 58
          D RG     G+   A P P P     P+ P  QPPP P P
Sbjct: 2  DARGGGGRPGESPGATPAPGPPPPPPPAPPQQQPPPPPPP 41


>gi|118402590 myosin XV [Homo sapiens]
          Length = 3530

 Score = 33.1 bits (74), Expect = 0.34
 Identities = 25/85 (29%), Positives = 32/85 (37%), Gaps = 8/85 (9%)

Query: 8   DSSRDSTSQVLRDLRGRESWAGDRRAQPTPSPRERA--------SPSSPPSQPPPGPLPL 59
           D  +  T  VLR  + R   + D R  P P P  R         SP  PP  P  GP P 
Sbjct: 618 DPEKPGTPIVLRRAQPRARSSNDARRPPAPQPAPRTLSHWSALLSPPVPPRPPSSGPPPA 677

Query: 60  LLVSLVQARVPEHENELHSGDYAPP 84
             +S   + +P   +   S    PP
Sbjct: 678 PPLSPALSGLPRPASPYGSLRRHPP 702


>gi|197276594 RNA binding motif protein 20 [Homo sapiens]
          Length = 1227

 Score = 33.1 bits (74), Expect = 0.34
 Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 3/102 (2%)

Query: 32  RAQPTPS-PRERASPSSPPSQPPP--GPLPLLLVSLVQARVPEHENELHSGDYAPPGSSV 88
           RA P PS PR    P  PP  PPP    LP ++ +  +       +  +     P  +S+
Sbjct: 30  RASPAPSGPRGMQQPPPPPQPPPPPQAGLPQIIQNAAKLLDKNPFSVSNPNPLLPSPASL 89

Query: 89  EIAKIFQADVVPRLQEGAVIVLGSTAHAVLAAPPYSIIKTSE 130
           ++A++     + RL+     V  +TA A +     S +  S+
Sbjct: 90  QLAQLQAQLTLHRLKLAQTAVTNNTAAATVLNQVLSKVAMSQ 131


>gi|4505195 mitogen-activated protein kinase kinase kinase 11 [Homo
           sapiens]
          Length = 847

 Score = 33.1 bits (74), Expect = 0.34
 Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 34  QPTPSPRERASPSSPPSQPPPGPLPLLL---VSLVQARVPEHENELHSGDYAPP 84
           +P PSP    S  +P S P P PL L L   V    A+ P  E E   G  +PP
Sbjct: 689 EPPPSPLICFSLKTPDSPPTPAPLLLDLGIPVGQRSAKSPRREEEPRGGTVSPP 742


>gi|239754512 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 556

 Score = 32.7 bits (73), Expect = 0.44
 Identities = 14/28 (50%), Positives = 15/28 (53%)

Query: 31  RRAQPTPSPRERASPSSPPSQPPPGPLP 58
           R A P P+P  R  P  PP  PPP P P
Sbjct: 434 RDAPPGPTPARRGLPRPPPPPPPPLPPP 461


>gi|239749073 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 884

 Score = 32.7 bits (73), Expect = 0.44
 Identities = 14/28 (50%), Positives = 15/28 (53%)

Query: 31  RRAQPTPSPRERASPSSPPSQPPPGPLP 58
           R A P P+P  R  P  PP  PPP P P
Sbjct: 762 RDAPPGPTPARRGLPRPPPPPPPPLPPP 789


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.132    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,752,966
Number of Sequences: 37866
Number of extensions: 805412
Number of successful extensions: 8886
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 216
Number of HSP's that attempted gapping in prelim test: 7261
Number of HSP's gapped (non-prelim): 1508
length of query: 322
length of database: 18,247,518
effective HSP length: 102
effective length of query: 220
effective length of database: 14,385,186
effective search space: 3164740920
effective search space used: 3164740920
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (28.5 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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