Guide to the Human Genome
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Name: OPA1 Sequence: fasta or formatted (924aa) NCBI GI: 18860831
Description:

optic atrophy 1 isoform 2

Referenced in:

Additional Brain Proteins
Additional Membrane Functions

Other entries for this name:
alt prot [942aa] optic atrophy 1 isoform 3
alt prot [961aa] optic atrophy 1 isoform 4
alt prot [979aa] optic atrophy 1 isoform 6
alt prot [960aa] optic atrophy 1 isoform 1
alt prot [978aa] optic atrophy 1 isoform 5
alt prot [997aa] optic atrophy 1 isoform 7
alt prot [1015aa] optic atrophy 1 isoform 8
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5         51           2
 C cysteine            1.1         10           1
 D aspartate           5.7         53           2
 E glutamate           9.2         85           3
 F phenylalanine       3.6         33           2
 G glycine             3.6         33           3
 H histidine           2.9         27           2
 I isoleucine          5.3         49           2
 K lysine              8.7         80           2
 L leucine            10.3         95           2
 M methionine          2.2         20           2
 N asparagine          4.0         37           2
 P proline             3.2         30           1
 Q glutamine           5.1         47           2
 R arginine            6.6         61           2
 S serine              6.6         61           2
 T threonine           5.4         50           2
 V valine              6.6         61           4
 W tryptophan          1.9         18           1
 Y tyrosine            2.5         23           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   optic atrophy 1 isoform 2 
OPA1                  0.994   optic atrophy 1 isoform 3 
OPA1                  0.990   optic atrophy 1 isoform 1 
OPA1                  0.990   optic atrophy 1 isoform 4 
OPA1                  0.984   optic atrophy 1 isoform 5 
OPA1                  0.984   optic atrophy 1 isoform 6 
OPA1                  0.980   optic atrophy 1 isoform 7 
OPA1                  0.974   optic atrophy 1 isoform 8 
DNM2                  0.049   dynamin 2 isoform 4 
DNM2                  0.049   dynamin 2 isoform 2 
DNM2                  0.049   dynamin 2 isoform 1 
DNM2                  0.049   dynamin 2 isoform 3 
DNM1                  0.045   dynamin 1 isoform 2 
DNM1                  0.045   dynamin 1 isoform 1 
DNM1L                 0.043   dynamin 1-like isoform 1 
DNM1L                 0.043   dynamin 1-like isoform 3 
DNM1L                 0.043   dynamin 1-like isoform 2 
DNM3                  0.043   dynamin 3 isoform a 
DNM3                  0.043   dynamin 3 isoform b 
MX1                   0.042   myxovirus resistance protein 1 
MX1                   0.042   myxovirus resistance protein 1 
MX2                   0.041   myxovirus resistance protein 2 
GOLGA4                0.008   golgi autoantigen, golgin subfamily a, 4 
RB1CC1                0.008   Rb1-inducible coiled coil protein 1 isoform 2 [Homo...
RB1CC1                0.008   Rb1-inducible coiled coil protein 1 isoform 1 [Homo...
KRT73                 0.008   keratin 73 
KRT74                 0.007   keratin 6 irs4 
UACA                  0.007   uveal autoantigen with coiled-coil domains and ankyr...
UACA                  0.007   uveal autoantigen with coiled-coil domains and ankyr...
KRT71                 0.007   keratin 71 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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