Guide to the Human Genome
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Name: OPA1 Sequence: fasta or formatted (997aa) NCBI GI: 224831251
Description:

optic atrophy 1 isoform 7

Referenced in:

Additional Brain Proteins
Additional Membrane Functions

Other entries for this name:
alt prot [924aa] optic atrophy 1 isoform 2
alt prot [942aa] optic atrophy 1 isoform 3
alt prot [961aa] optic atrophy 1 isoform 4
alt prot [979aa] optic atrophy 1 isoform 6
alt prot [960aa] optic atrophy 1 isoform 1
alt prot [978aa] optic atrophy 1 isoform 5
alt prot [1015aa] optic atrophy 1 isoform 8
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7         57           2
 C cysteine            1.0         10           1
 D aspartate           5.7         57           2
 E glutamate           9.3         93           3
 F phenylalanine       3.6         36           2
 G glycine             3.6         36           3
 H histidine           2.8         28           2
 I isoleucine          5.3         53           2
 K lysine              8.7         87           2
 L leucine            10.6        106           2
 M methionine          2.0         20           2
 N asparagine          3.7         37           2
 P proline             3.2         32           1
 Q glutamine           5.4         54           3
 R arginine            6.5         65           2
 S serine              6.8         68           2
 T threonine           5.2         52           2
 V valine              6.3         63           4
 W tryptophan          1.8         18           1
 Y tyrosine            2.5         25           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   optic atrophy 1 isoform 7 
OPA1                  0.994   optic atrophy 1 isoform 8 
OPA1                  0.960   optic atrophy 1 isoform 6 
OPA1                  0.957   optic atrophy 1 isoform 4 
OPA1                  0.955   optic atrophy 1 isoform 1 
OPA1                  0.949   optic atrophy 1 isoform 5 
OPA1                  0.915   optic atrophy 1 isoform 3 
OPA1                  0.911   optic atrophy 1 isoform 2 
DNM2                  0.045   dynamin 2 isoform 4 
DNM2                  0.045   dynamin 2 isoform 2 
DNM2                  0.045   dynamin 2 isoform 1 
DNM2                  0.045   dynamin 2 isoform 3 
DNM1                  0.042   dynamin 1 isoform 2 
DNM1                  0.042   dynamin 1 isoform 1 
DNM1L                 0.040   dynamin 1-like isoform 1 
DNM1L                 0.040   dynamin 1-like isoform 3 
DNM1L                 0.040   dynamin 1-like isoform 2 
DNM3                  0.040   dynamin 3 isoform a 
DNM3                  0.040   dynamin 3 isoform b 
MX1                   0.039   myxovirus resistance protein 1 
MX1                   0.039   myxovirus resistance protein 1 
MX2                   0.038   myxovirus resistance protein 2 
RNF214                0.009   ring finger protein 214 
RNF214                0.009   ring finger protein 214 
ALS2CR12              0.009   amyotrophic lateral sclerosis 2 (juvenile) chromoso...
MYH13                 0.009   myosin, heavy polypeptide 13, skeletal muscle [Homo...
ALS2CR12              0.009   amyotrophic lateral sclerosis 2 (juvenile) chromoso...
BAZ2B                 0.008   bromodomain adjacent to zinc finger domain, 2B [Homo...
C1orf65               0.008   hypothetical protein LOC164127 
RB1CC1                0.007   Rb1-inducible coiled coil protein 1 isoform 2 [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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