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Search of human proteins with 20149695
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|20149695 receptor accessory protein 4 [Homo sapiens]
(257 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|20149695 receptor accessory protein 4 [Homo sapiens] 518 e-147
gi|47679089 receptor accessory protein 3 [Homo sapiens] 255 3e-68
gi|12597657 receptor accessory protein 1 [Homo sapiens] 250 7e-67
gi|42476206 receptor accessory protein 2 [Homo sapiens] 249 1e-66
gi|115430112 receptor accessory protein 5 [Homo sapiens] 104 7e-23
gi|19923919 receptor accessory protein 6 [Homo sapiens] 87 1e-17
gi|221136781 S1 RNA binding domain 1 [Homo sapiens] 32 0.71
gi|148806928 hypothetical protein LOC57482 [Homo sapiens] 32 0.71
gi|190886435 RALBP1 associated Eps domain containing 1 isoform a... 32 0.71
gi|190886437 RALBP1 associated Eps domain containing 1 isoform b... 32 0.71
gi|4758416 golgi-specific brefeldin A resistant guanine nucleoti... 31 0.93
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 31 0.93
gi|224994221 SH3-domain binding protein 2 isoform b [Homo sapiens] 30 1.6
gi|224994219 SH3-domain binding protein 2 isoform c [Homo sapiens] 30 1.6
gi|170014705 SH3-domain binding protein 2 isoform a [Homo sapiens] 30 1.6
gi|170014703 SH3-domain binding protein 2 isoform a [Homo sapiens] 30 1.6
gi|150170653 EF-hand calcium binding domain 4A [Homo sapiens] 30 2.7
gi|55742678 glucocorticoid induced transcript 1 [Homo sapiens] 29 3.5
gi|134142826 pericentriolar material 1 [Homo sapiens] 29 4.6
gi|66932994 histidine acid phosphatase domain containing 2A isof... 29 4.6
gi|239047795 pleckstrin homology domain containing, family A mem... 28 6.0
gi|145309324 FH2 domain containing 1 [Homo sapiens] 28 6.0
gi|89276756 serine/threonine-protein kinase PRP4K [Homo sapiens] 28 6.0
gi|16554449 zonadhesin isoform 3 [Homo sapiens] 28 6.0
gi|27881494 zonadhesin isoform 6 [Homo sapiens] 28 6.0
gi|239754597 PREDICTED: hypothetical protein [Homo sapiens] 28 7.9
gi|89060961 PREDICTED: FERM and PDZ domain containing 3 [Homo sa... 28 7.9
gi|239749137 PREDICTED: hypothetical protein XP_002346922 [Homo ... 28 7.9
gi|89059963 PREDICTED: FERM and PDZ domain containing 3 [Homo sa... 28 7.9
gi|239743209 PREDICTED: hypothetical protein XP_002342803 [Homo ... 28 7.9
>gi|20149695 receptor accessory protein 4 [Homo sapiens]
Length = 257
Score = 518 bits (1333), Expect = e-147
Identities = 257/257 (100%), Positives = 257/257 (100%)
Query: 1 MVSWMICRLVVLVFGMLCPAYASYKAVKTKNIREYVRWMMYWIVFALFMAAEIVTDIFIS 60
MVSWMICRLVVLVFGMLCPAYASYKAVKTKNIREYVRWMMYWIVFALFMAAEIVTDIFIS
Sbjct: 1 MVSWMICRLVVLVFGMLCPAYASYKAVKTKNIREYVRWMMYWIVFALFMAAEIVTDIFIS 60
Query: 61 WFPFYYEIKMAFVLWLLSPYTKGASLLYRKFVHPSLSRHEKEIDAYIVQAKERSYETVLS 120
WFPFYYEIKMAFVLWLLSPYTKGASLLYRKFVHPSLSRHEKEIDAYIVQAKERSYETVLS
Sbjct: 61 WFPFYYEIKMAFVLWLLSPYTKGASLLYRKFVHPSLSRHEKEIDAYIVQAKERSYETVLS 120
Query: 121 FGKRGLNIAASAAVQAATKSQGALAGRLRSFSMQDLRSISDAPAPAYHDPLYLEDQVSHR 180
FGKRGLNIAASAAVQAATKSQGALAGRLRSFSMQDLRSISDAPAPAYHDPLYLEDQVSHR
Sbjct: 121 FGKRGLNIAASAAVQAATKSQGALAGRLRSFSMQDLRSISDAPAPAYHDPLYLEDQVSHR 180
Query: 181 RPPIGYRAGGLQDSDTEDECWSDTEAVPRAPARPREKPLIRSQSLRVVKRKPPVREGTSR 240
RPPIGYRAGGLQDSDTEDECWSDTEAVPRAPARPREKPLIRSQSLRVVKRKPPVREGTSR
Sbjct: 181 RPPIGYRAGGLQDSDTEDECWSDTEAVPRAPARPREKPLIRSQSLRVVKRKPPVREGTSR 240
Query: 241 SLKVRTRKKTVPSDVDS 257
SLKVRTRKKTVPSDVDS
Sbjct: 241 SLKVRTRKKTVPSDVDS 257
>gi|47679089 receptor accessory protein 3 [Homo sapiens]
Length = 255
Score = 255 bits (651), Expect = 3e-68
Identities = 141/258 (54%), Positives = 175/258 (67%), Gaps = 17/258 (6%)
Query: 1 MVSWMICRLVVLVFGMLCPAYASYKAVKTKNIREYVRWMMYWIVFALFMAAEIVTDIFIS 60
MVSWMI R VVLVFGML PAY SYKAVKTKN++EYVRWMMYWIVFAL+ E V D ++
Sbjct: 1 MVSWMISRAVVLVFGMLYPAYYSYKAVKTKNVKEYVRWMMYWIVFALYTVIETVADQTVA 60
Query: 61 WFPFYYEIKMAFVLWLLSPYTKGASLLYRKFVHPSLSRHEKEIDAYIVQAKERSYETVLS 120
WFP YYE+K+AFV+WLLSPYTKGASL+YRKF+HP LS E+EID YIVQAKER YET+++
Sbjct: 61 WFPLYYELKIAFVIWLLSPYTKGASLIYRKFLHPLLSSKEREIDDYIVQAKERGYETMVN 120
Query: 121 FGKRGLNIAASAAVQAATKSQGALAGRLRSFSMQDLRSISDAPAPAYHDPLYLEDQVSHR 180
FG++GLN+AA+AAV AA KSQGA+ RLRSFSM DL +I P P + +
Sbjct: 121 FGRQGLNLAATAAVTAAVKSQGAITERLRSFSMHDLTTI-QGDEPVGQRPYQPLPEAKKK 179
Query: 181 RPPIGYRAGG----LQDSD--TEDEC---WSDTEAVPRAPARPREKPLIRSQSLRVVKRK 231
P + G L+D D T++E +SD E + K L RSQS++ VK
Sbjct: 180 SKPAPSESAGYGIPLKDGDEKTDEEAEGPYSDNEML-------THKGLRRSQSMKSVKTT 232
Query: 232 PPVREGTSRSLKVRTRKK 249
+E SLK + +K+
Sbjct: 233 KGRKEVRYGSLKYKVKKR 250
>gi|12597657 receptor accessory protein 1 [Homo sapiens]
Length = 201
Score = 250 bits (639), Expect = 7e-67
Identities = 121/170 (71%), Positives = 143/170 (84%)
Query: 1 MVSWMICRLVVLVFGMLCPAYASYKAVKTKNIREYVRWMMYWIVFALFMAAEIVTDIFIS 60
MVSW+I RLVVL+FG L PAY SYKAVK+K+I+EYV+WMMYWI+FALF AE TDIF+
Sbjct: 1 MVSWIISRLVVLIFGTLYPAYYSYKAVKSKDIKEYVKWMMYWIIFALFTTAETFTDIFLC 60
Query: 61 WFPFYYEIKMAFVLWLLSPYTKGASLLYRKFVHPSLSRHEKEIDAYIVQAKERSYETVLS 120
WFPFYYE+K+AFV WLLSPYTKG+SLLYRKFVHP+LS EKEID +VQAK+RSY+ ++
Sbjct: 61 WFPFYYELKIAFVAWLLSPYTKGSSLLYRKFVHPTLSSKEKEIDDCLVQAKDRSYDALVH 120
Query: 121 FGKRGLNIAASAAVQAATKSQGALAGRLRSFSMQDLRSISDAPAPAYHDP 170
FGKRGLN+AA+AAV AA+K QGAL+ RLRSFSMQDL +I APA P
Sbjct: 121 FGKRGLNVAATAAVMAASKGQGALSERLRSFSMQDLTTIRGDGAPAPSGP 170
>gi|42476206 receptor accessory protein 2 [Homo sapiens]
Length = 252
Score = 249 bits (637), Expect = 1e-66
Identities = 134/259 (51%), Positives = 171/259 (66%), Gaps = 23/259 (8%)
Query: 1 MVSWMICRLVVLVFGMLCPAYASYKAVKTKNIREYVRWMMYWIVFALFMAAEIVTDIFIS 60
MVSW+I RLVVL+FG L PAY+SYKAVKTKN++EYV+WMMYWIVFA F AE +TDI +S
Sbjct: 1 MVSWIISRLVVLIFGTLYPAYSSYKAVKTKNVKEYVKWMMYWIVFAFFTTAETLTDIVLS 60
Query: 61 WFPFYYEIKMAFVLWLLSPYTKGASLLYRKFVHPSLSRHEKEIDAYIVQAKERSYETVLS 120
WFPFY+E+K+AFV+WLLSPYTKG+S+LYRKFVHP+LS EKEID YI QA+++SYET++
Sbjct: 61 WFPFYFELKIAFVIWLLSPYTKGSSVLYRKFVHPTLSNKEKEIDEYITQARDKSYETMMR 120
Query: 121 FGKRGLNIAASAAVQAATKSQGALAGRLRSFSMQDLRSISDAPAPAYHDPLYLEDQVSHR 180
GKRGLN+AA+AAV AA K G L+ +LRSFSMQDL I D ED + +
Sbjct: 121 VGKRGLNLAANAAVTAAAK--GVLSEKLRSFSMQDLTLIRD------------EDALPLQ 166
Query: 181 RPPIGYRAGGLQDSDTEDECWSDTEAVPRAPARPREKPLIRSQS---------LRVVKRK 231
RP R DT ++ D R+ P + S+ + +K+
Sbjct: 167 RPDGRLRPSPGSLLDTIEDLGDDPALSLRSSTNPADSRTEASEDDMGDKAPKRAKPIKKA 226
Query: 232 PPVREGTSRSLKVRTRKKT 250
P S++LK R +KKT
Sbjct: 227 PKAEPLASKTLKTRPKKKT 245
>gi|115430112 receptor accessory protein 5 [Homo sapiens]
Length = 189
Score = 104 bits (260), Expect = 7e-23
Identities = 44/114 (38%), Positives = 74/114 (64%), Gaps = 5/114 (4%)
Query: 5 MICRLVVLVFGMLCPAYASYKAVKTKNIREYVRWMMYWIVFALFMAAEIVTDIFISWFPF 64
++C L+ G PAY S KA+++ N + +W+ YW+V+ +F AE +DIF+SWFPF
Sbjct: 57 LLCNLI----GFGYPAYISIKAIESPNKEDDTQWLTYWVVYGVFSIAEFFSDIFLSWFPF 112
Query: 65 YYEIKMAFVLWLLSPY-TKGASLLYRKFVHPSLSRHEKEIDAYIVQAKERSYET 117
YY +K F+LW ++P + GA LLY++ + P +HE ++D+ + K+++ ET
Sbjct: 113 YYMLKCGFLLWCMAPSPSNGAELLYKRIIRPFFLKHESQMDSVVKDLKDKAKET 166
>gi|19923919 receptor accessory protein 6 [Homo sapiens]
Length = 184
Score = 87.0 bits (214), Expect = 1e-17
Identities = 41/101 (40%), Positives = 64/101 (63%), Gaps = 5/101 (4%)
Query: 5 MICRLVVLVFGMLCPAYASYKAVKTKNIREYVRWMMYWIVFALFMAAEIVTDIFISWFPF 64
++C L+ G + PAYAS KA+++ + + W+ YW+V+ALF AE +D+ +SWFPF
Sbjct: 56 LLCNLI----GFVYPAYASIKAIESPSKDDDTVWLTYWVVYALFGLAEFFSDLLLSWFPF 111
Query: 65 YYEIKMAFVLWLLSPYT-KGASLLYRKFVHPSLSRHEKEID 104
YY K AF+L+ ++P GA +LY++ V P RH +D
Sbjct: 112 YYVGKCAFLLFCMAPRPWNGALMLYQRVVRPLFLRHHGAVD 152
>gi|221136781 S1 RNA binding domain 1 [Homo sapiens]
Length = 995
Score = 31.6 bits (70), Expect = 0.71
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 192 QDSDTEDECWSDTEAVPRAPARPREKPLIRSQSLRVVKRKPPVREGT 238
++ D ED W + VPR+ +P K + RV K P + +G+
Sbjct: 32 EEDDKEDSAWEPQKKVPRSRKQPPPKESKPKRMPRVKKNAPQISDGS 78
>gi|148806928 hypothetical protein LOC57482 [Homo sapiens]
Length = 1233
Score = 31.6 bits (70), Expect = 0.71
Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 9/105 (8%)
Query: 149 RSFSMQDLRSISDAPAPAYHDPLYLEDQVSHRRPPI--GYRAGGLQDSDTEDECWSDTEA 206
R + ++ L + P P +P + + S RRPP G Q D E+E A
Sbjct: 982 RPYLVELLSRRAGRPDPEPSEPSKEDQESSDRRPPSPPGPEERKGQKRDEEEEATERKPA 1041
Query: 207 VPRAPARPREKPLIRSQSLRVVKRKPPVR-----EGTSRSLKVRT 246
P PA +EKP ++ R K KP ++ +G+ + KV T
Sbjct: 1042 SPPLPATQQEKPSQTPEAGR--KEKPMLQSRHSLDGSKLTEKVET 1084
>gi|190886435 RALBP1 associated Eps domain containing 1 isoform a
[Homo sapiens]
Length = 795
Score = 31.6 bits (70), Expect = 0.71
Identities = 30/104 (28%), Positives = 37/104 (35%), Gaps = 13/104 (12%)
Query: 160 SDAPAPAYHDPLYLEDQVSHRR--PPIGYRAGGLQD---------SDTEDECWSDTEAVP 208
S AP PA H P+ + ++H P D S+ DE D EA
Sbjct: 593 SQAPGPAVHRPVDADGLITHTSTSPQQIPEQPNFADFSQFEVFAASNVNDE--QDDEAEK 650
Query: 209 RAPARPREKPLIRSQSLRVVKRKPPVREGTSRSLKVRTRKKTVP 252
P EK + SLRV K E T+ S K T P
Sbjct: 651 HPEVLPAEKASDPASSLRVAKTDSKTEEKTAASAPANVSKGTTP 694
>gi|190886437 RALBP1 associated Eps domain containing 1 isoform b
[Homo sapiens]
Length = 769
Score = 31.6 bits (70), Expect = 0.71
Identities = 30/104 (28%), Positives = 37/104 (35%), Gaps = 13/104 (12%)
Query: 160 SDAPAPAYHDPLYLEDQVSHRR--PPIGYRAGGLQD---------SDTEDECWSDTEAVP 208
S AP PA H P+ + ++H P D S+ DE D EA
Sbjct: 567 SQAPGPAVHRPVDADGLITHTSTSPQQIPEQPNFADFSQFEVFAASNVNDE--QDDEAEK 624
Query: 209 RAPARPREKPLIRSQSLRVVKRKPPVREGTSRSLKVRTRKKTVP 252
P EK + SLRV K E T+ S K T P
Sbjct: 625 HPEVLPAEKASDPASSLRVAKTDSKTEEKTAASAPANVSKGTTP 668
>gi|4758416 golgi-specific brefeldin A resistant guanine nucleotide
exchange factor 1 [Homo sapiens]
Length = 1859
Score = 31.2 bits (69), Expect = 0.93
Identities = 32/117 (27%), Positives = 45/117 (38%), Gaps = 27/117 (23%)
Query: 125 GLNIAASAAVQAATKSQGALAGRLRSFSMQDLRSISDAPAPAYH------DPLYLEDQ-- 176
G + AA+QA ++ AG + SD+ P+YH D Y D
Sbjct: 1274 GSGVKPPAALQATARADAPDAG-----------AQSDSELPSYHQNDVSLDRGYTSDSEV 1322
Query: 177 -VSHRRPPIGYRAGGLQDSDTEDECW-----SDTEAVPRAPARPREKPLIRSQSLRV 227
H RP +R+ D+D + W D + P+RP PLI SL V
Sbjct: 1323 YTDHGRPGKIHRSA--TDADVVNSGWLVVGKDDVDNSKPGPSRPGPSPLINQYSLTV 1377
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 31.2 bits (69), Expect = 0.93
Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 6/126 (4%)
Query: 129 AASAAVQAATKSQGALAGRLRSFSMQDLRSISDAPAPAYHDPLYLEDQVSHRRPPIGYRA 188
++S++ +++ S + + S S S S +P+PA P L S ++PP G R
Sbjct: 2615 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQALPKPASPKKPPPGERR 2674
Query: 189 GGLQDSDTEDECWSDTEAVPRAPA---RPREKPLIRSQSLRVVKR-KPPVREGTSRSLKV 244
+ + D+ ++ +P RP +P R Q +R + G SRS
Sbjct: 2675 S--RSPRKPIDSLRDSRSLSYSPVERRRPSPQPSPRDQQSSSSERGSRRGQRGDSRSPSH 2732
Query: 245 RTRKKT 250
+ R++T
Sbjct: 2733 KRRRET 2738
>gi|224994221 SH3-domain binding protein 2 isoform b [Homo sapiens]
Length = 618
Score = 30.4 bits (67), Expect = 1.6
Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 6/75 (8%)
Query: 170 PLYLEDQVSHRRPPIGYRAGGLQDSDTEDECWSDTEAVPRAPARPR---EKPLIRSQSLR 226
PL H P +G A +DS + C E PR PA PR + PL +
Sbjct: 290 PLLPPPPPKHGLPDVGLAA---EDSKRDPLCPRRAEPCPRVPATPRRMSDPPLSTMPTAP 346
Query: 227 VVKRKPPVREGTSRS 241
+++ P RE S S
Sbjct: 347 GLRKPPCFRESASPS 361
>gi|224994219 SH3-domain binding protein 2 isoform c [Homo sapiens]
Length = 589
Score = 30.4 bits (67), Expect = 1.6
Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 6/75 (8%)
Query: 170 PLYLEDQVSHRRPPIGYRAGGLQDSDTEDECWSDTEAVPRAPARPR---EKPLIRSQSLR 226
PL H P +G A +DS + C E PR PA PR + PL +
Sbjct: 261 PLLPPPPPKHGLPDVGLAA---EDSKRDPLCPRRAEPCPRVPATPRRMSDPPLSTMPTAP 317
Query: 227 VVKRKPPVREGTSRS 241
+++ P RE S S
Sbjct: 318 GLRKPPCFRESASPS 332
>gi|170014705 SH3-domain binding protein 2 isoform a [Homo sapiens]
Length = 561
Score = 30.4 bits (67), Expect = 1.6
Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 6/75 (8%)
Query: 170 PLYLEDQVSHRRPPIGYRAGGLQDSDTEDECWSDTEAVPRAPARPR---EKPLIRSQSLR 226
PL H P +G A +DS + C E PR PA PR + PL +
Sbjct: 233 PLLPPPPPKHGLPDVGLAA---EDSKRDPLCPRRAEPCPRVPATPRRMSDPPLSTMPTAP 289
Query: 227 VVKRKPPVREGTSRS 241
+++ P RE S S
Sbjct: 290 GLRKPPCFRESASPS 304
>gi|170014703 SH3-domain binding protein 2 isoform a [Homo sapiens]
Length = 561
Score = 30.4 bits (67), Expect = 1.6
Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 6/75 (8%)
Query: 170 PLYLEDQVSHRRPPIGYRAGGLQDSDTEDECWSDTEAVPRAPARPR---EKPLIRSQSLR 226
PL H P +G A +DS + C E PR PA PR + PL +
Sbjct: 233 PLLPPPPPKHGLPDVGLAA---EDSKRDPLCPRRAEPCPRVPATPRRMSDPPLSTMPTAP 289
Query: 227 VVKRKPPVREGTSRS 241
+++ P RE S S
Sbjct: 290 GLRKPPCFRESASPS 304
>gi|150170653 EF-hand calcium binding domain 4A [Homo sapiens]
Length = 294
Score = 29.6 bits (65), Expect = 2.7
Identities = 31/113 (27%), Positives = 47/113 (41%), Gaps = 6/113 (5%)
Query: 128 IAASAAVQAATKSQGALAGRLRSFSMQDLRSISDAPAPAYHDPLYLEDQVSHRRPPIGYR 187
I ASA ++ A + + L LR + R + Y + L +Q RRPP
Sbjct: 180 IRASACLEEAARERDGLEQALRRRESEHEREVR----ALYEETEQLREQ--SRRPPSQNF 233
Query: 188 AGGLQDSDTEDECWSDTEAVPRAPARPREKPLIRSQSLRVVKRKPPVREGTSR 240
A G + S E E S + + RA R RE+ R Q + +P G ++
Sbjct: 234 ARGERRSRLELELQSREQDLERAGLRQRERRGRRLQEHAERESQPATATGAAQ 286
>gi|55742678 glucocorticoid induced transcript 1 [Homo sapiens]
Length = 547
Score = 29.3 bits (64), Expect = 3.5
Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Query: 182 PPIGYRAGGLQDSDTEDECWSDTEAVPRAPARPREKPLIRSQSLRVVKRKP--PV-REGT 238
P G G S T + E PRA RPR P +S +R P PV R
Sbjct: 96 PGPGAARGPSPSSPTPPAAAAPAEQAPRAKGRPRRSPESHRRSSSPERRSPGSPVCRADK 155
Query: 239 SRSLKVRT 246
++S +VRT
Sbjct: 156 AKSQQVRT 163
>gi|134142826 pericentriolar material 1 [Homo sapiens]
Length = 2024
Score = 28.9 bits (63), Expect = 4.6
Identities = 16/54 (29%), Positives = 24/54 (44%)
Query: 112 ERSYETVLSFGKRGLNIAASAAVQAATKSQGALAGRLRSFSMQDLRSISDAPAP 165
E+ E F K G +++ + + K+Q GR R F + L S S P P
Sbjct: 1214 EQEGEVEKPFIKTGFSVSVEKSTSSNRKNQLDTNGRRRQFDEESLESFSSMPDP 1267
>gi|66932994 histidine acid phosphatase domain containing 2A isoform
4 [Homo sapiens]
Length = 1194
Score = 28.9 bits (63), Expect = 4.6
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 186 YRAGGLQDSDTE-DECWSDTEAVPRAPARPREKPLIRSQ---SLRVVKRKPPVREGTSR 240
+R GGL D + D + P P PR PLIR++ S+ V+ R G R
Sbjct: 840 FRYGGLLDETQDADRALQTSPQPPEGPGLPRRSPLIRNRKAGSMEVLSETSSSRPGGYR 898
>gi|239047795 pleckstrin homology domain containing, family A member
7 [Homo sapiens]
Length = 1121
Score = 28.5 bits (62), Expect = 6.0
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 199 ECWSDTEAVPRAPARPREKPLIRSQSLRVVKRKPPVRE 236
E +S + P P PRE +IR S+R +KR+ R+
Sbjct: 927 ELYSPEDQPPAVPPLPREATIIRHTSVRGLKRQSDERK 964
>gi|145309324 FH2 domain containing 1 [Homo sapiens]
Length = 1143
Score = 28.5 bits (62), Expect = 6.0
Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Query: 136 AATKSQGALAGRLRSFSMQDLRSISDAPAPAYHDPLYLEDQ-VSHRRPPIGYRAGGLQDS 194
+A +SQGA+A +R+ + + S+ P+ + RRP + R
Sbjct: 879 SARRSQGAVAKSVRTLTASENESMRKVM------PITKSSRGAGWRRPELSSRGPSQNPP 932
Query: 195 DTEDECWSDTEAVPRAPARPREKPLIRSQS 224
+ D WS +V RA E+ L R S
Sbjct: 933 SSTDTVWSRQNSVRRASTGAEEQRLPRGSS 962
>gi|89276756 serine/threonine-protein kinase PRP4K [Homo sapiens]
Length = 1007
Score = 28.5 bits (62), Expect = 6.0
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 201 WSDTEAVPRAPARPREK-PLIRSQSLRVVKRKPPVREGTSRS---LKVRTRKK 249
WS T R+P R R + PL RS+S R R P R+ RS L+ R+R +
Sbjct: 436 WSPTRRRSRSPIRRRSRSPLRRSRSPRRRSRSPRRRDRGRRSRSRLRRRSRSR 488
>gi|16554449 zonadhesin isoform 3 [Homo sapiens]
Length = 2812
Score = 28.5 bits (62), Expect = 6.0
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 208 PRAPARPREKPLIRSQSLRVVKRKP--PVREGT--SRSLKVRTRKKTVPSD 254
P P P EKP I ++ + KP P + T L + T K T+P++
Sbjct: 735 PEKPTTPTEKPTIPTEKPTISPEKPTTPTEKPTISPEKLTIPTEKPTIPTE 785
>gi|27881494 zonadhesin isoform 6 [Homo sapiens]
Length = 2721
Score = 28.5 bits (62), Expect = 6.0
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 208 PRAPARPREKPLIRSQSLRVVKRKP--PVREGT--SRSLKVRTRKKTVPSD 254
P P P EKP I ++ + KP P + T L + T K T+P++
Sbjct: 735 PEKPTTPTEKPTIPTEKPTISPEKPTTPTEKPTISPEKLTIPTEKPTIPTE 785
>gi|239754597 PREDICTED: hypothetical protein [Homo sapiens]
Length = 170
Score = 28.1 bits (61), Expect = 7.9
Identities = 28/85 (32%), Positives = 33/85 (38%), Gaps = 13/85 (15%)
Query: 148 LRSFSMQDLRSISDAPAPAYHDPLYLEDQVS------HRRPPIGYRAGGLQDSDTEDECW 201
LRS + L ++ P+PA L L Q S H+ PP AG Q S W
Sbjct: 65 LRSAAAPPLSHLAGTPSPASRIALSLSCQASQFRTAWHQEPP---GAGATQRSPA---TW 118
Query: 202 SDTEAVPRAPARPREKPLIRSQSLR 226
P RPRE P SQ R
Sbjct: 119 RPARTQPPGGVRPRE-PEPESQGRR 142
>gi|89060961 PREDICTED: FERM and PDZ domain containing 3 [Homo
sapiens]
Length = 1810
Score = 28.1 bits (61), Expect = 7.9
Identities = 18/90 (20%), Positives = 34/90 (37%)
Query: 110 AKERSYETVLSFGKRGLNIAASAAVQAATKSQGALAGRLRSFSMQDLRSISDAPAPAYHD 169
++ RSY S G LN + + G G S ++ + P P +
Sbjct: 625 SRARSYTLDNSLGAEALNFYCDSCKAKLQEQLGPRKGGKPGSSRDNIVDLMSLPPPGSEE 684
Query: 170 PLYLEDQVSHRRPPIGYRAGGLQDSDTEDE 199
ED+ + P I G +D+ ++++
Sbjct: 685 EEEEEDETTSLLPAIAAPPPGFRDNSSDED 714
>gi|239749137 PREDICTED: hypothetical protein XP_002346922 [Homo
sapiens]
Length = 170
Score = 28.1 bits (61), Expect = 7.9
Identities = 28/85 (32%), Positives = 33/85 (38%), Gaps = 13/85 (15%)
Query: 148 LRSFSMQDLRSISDAPAPAYHDPLYLEDQVS------HRRPPIGYRAGGLQDSDTEDECW 201
LRS + L ++ P+PA L L Q S H+ PP AG Q S W
Sbjct: 65 LRSAAAPPLSHLAGTPSPASRIALSLSCQASQFRTAWHQEPP---GAGATQRSPA---TW 118
Query: 202 SDTEAVPRAPARPREKPLIRSQSLR 226
P RPRE P SQ R
Sbjct: 119 RPARTQPPGGVRPRE-PEPESQGRR 142
>gi|89059963 PREDICTED: FERM and PDZ domain containing 3 [Homo
sapiens]
Length = 1810
Score = 28.1 bits (61), Expect = 7.9
Identities = 18/90 (20%), Positives = 34/90 (37%)
Query: 110 AKERSYETVLSFGKRGLNIAASAAVQAATKSQGALAGRLRSFSMQDLRSISDAPAPAYHD 169
++ RSY S G LN + + G G S ++ + P P +
Sbjct: 625 SRARSYTLDNSLGAEALNFYCDSCKAKLQEQLGPRKGGKPGSSRDNIVDLMSLPPPGSEE 684
Query: 170 PLYLEDQVSHRRPPIGYRAGGLQDSDTEDE 199
ED+ + P I G +D+ ++++
Sbjct: 685 EEEEEDETTSLLPAIAAPPPGFRDNSSDED 714
>gi|239743209 PREDICTED: hypothetical protein XP_002342803 [Homo
sapiens]
Length = 170
Score = 28.1 bits (61), Expect = 7.9
Identities = 28/85 (32%), Positives = 33/85 (38%), Gaps = 13/85 (15%)
Query: 148 LRSFSMQDLRSISDAPAPAYHDPLYLEDQVS------HRRPPIGYRAGGLQDSDTEDECW 201
LRS + L ++ P+PA L L Q S H+ PP AG Q S W
Sbjct: 65 LRSAAAPPLSHLAGTPSPASRIALSLSCQASQFRTAWHQEPP---GAGATQRSPA---TW 118
Query: 202 SDTEAVPRAPARPREKPLIRSQSLR 226
P RPRE P SQ R
Sbjct: 119 RPARTQPPGGVRPRE-PEPESQGRR 142
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.134 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,506,149
Number of Sequences: 37866
Number of extensions: 413425
Number of successful extensions: 1261
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1218
Number of HSP's gapped (non-prelim): 63
length of query: 257
length of database: 18,247,518
effective HSP length: 100
effective length of query: 157
effective length of database: 14,460,918
effective search space: 2270364126
effective search space used: 2270364126
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.