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Search of human proteins with 20127386
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|20127386 l-myc-1 proto-oncogene isoform 2 [Homo sapiens]
(206 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|20127386 l-myc-1 proto-oncogene isoform 2 [Homo sapiens] 457 e-129
gi|74315997 l-myc-1 proto-oncogene isoform 1 [Homo sapiens] 366 e-102
gi|74315995 l-myc-1 proto-oncogene isoform 1 [Homo sapiens] 366 e-102
gi|239757875 PREDICTED: similar to L-myc-2 protein, partial [Hom... 242 1e-64
gi|19923312 v-myc myelocytomatosis viral related oncogene, neuro... 96 2e-20
gi|71774083 myc proto-oncogene protein [Homo sapiens] 69 3e-12
gi|116284398 WAS/WASL interacting protein family, member 1 [Homo... 49 4e-06
gi|38373695 WAS/WASL interacting protein family, member 1 [Homo ... 49 4e-06
gi|217416350 cask-interacting protein 2 isoform b [Homo sapiens] 47 1e-05
gi|217416347 cask-interacting protein 2 isoform a [Homo sapiens] 47 1e-05
gi|162329583 cleavage and polyadenylation specific factor 6, 68 ... 45 6e-05
gi|237512940 early growth response 4 [Homo sapiens] 42 3e-04
gi|163965366 nascent polypeptide-associated complex alpha subuni... 42 3e-04
gi|110832843 TBP-associated factor 4 [Homo sapiens] 41 6e-04
gi|42544125 splicing factor 1 isoform 2 [Homo sapiens] 41 6e-04
gi|7657387 CCR4-NOT transcription complex, subunit 3 [Homo sapiens] 41 6e-04
gi|153792074 proline rich 12 [Homo sapiens] 41 8e-04
gi|7662234 rab11-family interacting protein 3 isoform 1 [Homo sa... 40 0.001
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 40 0.001
gi|169213235 PREDICTED: hypothetical protein [Homo sapiens] 40 0.001
gi|169212744 PREDICTED: hypothetical protein [Homo sapiens] 40 0.001
gi|154146199 sal-like 3 [Homo sapiens] 40 0.002
gi|21704281 junctophilin 2 isoform 1 [Homo sapiens] 40 0.002
gi|33286446 opioid growth factor receptor [Homo sapiens] 39 0.002
gi|149158696 HLA-B associated transcript-3 isoform b [Homo sapiens] 39 0.002
gi|18375632 HLA-B associated transcript-3 isoform b [Homo sapiens] 39 0.002
gi|18375630 HLA-B associated transcript-3 isoform b [Homo sapiens] 39 0.002
gi|149158692 HLA-B associated transcript-3 isoform a [Homo sapiens] 39 0.002
gi|122692281 hypothetical protein LOC645369 [Homo sapiens] 39 0.003
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa... 39 0.004
>gi|20127386 l-myc-1 proto-oncogene isoform 2 [Homo sapiens]
Length = 206
Score = 457 bits (1177), Expect = e-129
Identities = 206/206 (100%), Positives = 206/206 (100%)
Query: 1 MDYDSYQHYFYDYDCGEDFYRSTAPSEDIWKKFELVPSPPTSPPWGLGPGAGDPAPGIGP 60
MDYDSYQHYFYDYDCGEDFYRSTAPSEDIWKKFELVPSPPTSPPWGLGPGAGDPAPGIGP
Sbjct: 1 MDYDSYQHYFYDYDCGEDFYRSTAPSEDIWKKFELVPSPPTSPPWGLGPGAGDPAPGIGP 60
Query: 61 PEPWPGGCTGDEAESRGHSKGWGRNYASIIRRDCMWSGFSARERLERAVSDRLAPGAPRG 120
PEPWPGGCTGDEAESRGHSKGWGRNYASIIRRDCMWSGFSARERLERAVSDRLAPGAPRG
Sbjct: 61 PEPWPGGCTGDEAESRGHSKGWGRNYASIIRRDCMWSGFSARERLERAVSDRLAPGAPRG 120
Query: 121 NPPKASAAPDCTPSLEAGNPAPAAPCPLGEPKTQACSGSESPSDSGKDLPEPSKRGPPHG 180
NPPKASAAPDCTPSLEAGNPAPAAPCPLGEPKTQACSGSESPSDSGKDLPEPSKRGPPHG
Sbjct: 121 NPPKASAAPDCTPSLEAGNPAPAAPCPLGEPKTQACSGSESPSDSGKDLPEPSKRGPPHG 180
Query: 181 WPKLCPCLRSGIGSSQALGPSPPLFG 206
WPKLCPCLRSGIGSSQALGPSPPLFG
Sbjct: 181 WPKLCPCLRSGIGSSQALGPSPPLFG 206
>gi|74315997 l-myc-1 proto-oncogene isoform 1 [Homo sapiens]
Length = 364
Score = 366 bits (940), Expect = e-102
Identities = 165/165 (100%), Positives = 165/165 (100%)
Query: 1 MDYDSYQHYFYDYDCGEDFYRSTAPSEDIWKKFELVPSPPTSPPWGLGPGAGDPAPGIGP 60
MDYDSYQHYFYDYDCGEDFYRSTAPSEDIWKKFELVPSPPTSPPWGLGPGAGDPAPGIGP
Sbjct: 1 MDYDSYQHYFYDYDCGEDFYRSTAPSEDIWKKFELVPSPPTSPPWGLGPGAGDPAPGIGP 60
Query: 61 PEPWPGGCTGDEAESRGHSKGWGRNYASIIRRDCMWSGFSARERLERAVSDRLAPGAPRG 120
PEPWPGGCTGDEAESRGHSKGWGRNYASIIRRDCMWSGFSARERLERAVSDRLAPGAPRG
Sbjct: 61 PEPWPGGCTGDEAESRGHSKGWGRNYASIIRRDCMWSGFSARERLERAVSDRLAPGAPRG 120
Query: 121 NPPKASAAPDCTPSLEAGNPAPAAPCPLGEPKTQACSGSESPSDS 165
NPPKASAAPDCTPSLEAGNPAPAAPCPLGEPKTQACSGSESPSDS
Sbjct: 121 NPPKASAAPDCTPSLEAGNPAPAAPCPLGEPKTQACSGSESPSDS 165
>gi|74315995 l-myc-1 proto-oncogene isoform 1 [Homo sapiens]
Length = 364
Score = 366 bits (940), Expect = e-102
Identities = 165/165 (100%), Positives = 165/165 (100%)
Query: 1 MDYDSYQHYFYDYDCGEDFYRSTAPSEDIWKKFELVPSPPTSPPWGLGPGAGDPAPGIGP 60
MDYDSYQHYFYDYDCGEDFYRSTAPSEDIWKKFELVPSPPTSPPWGLGPGAGDPAPGIGP
Sbjct: 1 MDYDSYQHYFYDYDCGEDFYRSTAPSEDIWKKFELVPSPPTSPPWGLGPGAGDPAPGIGP 60
Query: 61 PEPWPGGCTGDEAESRGHSKGWGRNYASIIRRDCMWSGFSARERLERAVSDRLAPGAPRG 120
PEPWPGGCTGDEAESRGHSKGWGRNYASIIRRDCMWSGFSARERLERAVSDRLAPGAPRG
Sbjct: 61 PEPWPGGCTGDEAESRGHSKGWGRNYASIIRRDCMWSGFSARERLERAVSDRLAPGAPRG 120
Query: 121 NPPKASAAPDCTPSLEAGNPAPAAPCPLGEPKTQACSGSESPSDS 165
NPPKASAAPDCTPSLEAGNPAPAAPCPLGEPKTQACSGSESPSDS
Sbjct: 121 NPPKASAAPDCTPSLEAGNPAPAAPCPLGEPKTQACSGSESPSDS 165
>gi|239757875 PREDICTED: similar to L-myc-2 protein, partial [Homo
sapiens]
Length = 349
Score = 242 bits (618), Expect = 1e-64
Identities = 118/165 (71%), Positives = 123/165 (74%), Gaps = 5/165 (3%)
Query: 1 MDYDSYQHYFYDYDCGEDFYRSTAPSEDIWKKFELVPSPPTSPPWGLGPGAGDPAPGIGP 60
MD DSY HYFYDYD GEDFYRST PSEDIWKKFELVP PPW LGP AG+PA G
Sbjct: 60 MDRDSYHHYFYDYDGGEDFYRSTTPSEDIWKKFELVP-----PPWDLGPAAGNPALSFGL 114
Query: 61 PEPWPGGCTGDEAESRGHSKGWGRNYASIIRRDCMWSGFSARERLERAVSDRLAPGAPRG 120
EPWP GC GDE ES+ + K W NYAS+IRRDCMWSGFS +E LERAVSD LA GAP G
Sbjct: 115 LEPWPVGCAGDETESQDYWKAWDANYASLIRRDCMWSGFSTQEPLERAVSDLLAVGAPSG 174
Query: 121 NPPKASAAPDCTPSLEAGNPAPAAPCPLGEPKTQACSGSESPSDS 165
PK A PD TP LEAGN AP PC LGEPK QACS SESPSDS
Sbjct: 175 YSPKEFATPDYTPELEAGNLAPIFPCLLGEPKIQACSRSESPSDS 219
>gi|19923312 v-myc myelocytomatosis viral related oncogene,
neuroblastoma derived [Homo sapiens]
Length = 464
Score = 96.3 bits (238), Expect = 2e-20
Identities = 81/229 (35%), Positives = 105/229 (45%), Gaps = 36/229 (15%)
Query: 1 MDYDSYQHYFYDYDCGEDFY----RSTAPSEDIWKKFELVPSPPTSPPWGLGPGAGDPAP 56
+++DS Q FY + +DFY ST P EDIWKKFEL+P+PP SP G + +P
Sbjct: 19 LEFDSLQPCFYPDE--DDFYFGGPDSTPPGEDIWKKFELLPTPPLSPSRGFAEHSSEPPS 76
Query: 57 GIGPP----EPWPGGCTGDEAESRGHSKGWGRNYASIIRRDCMWSGFSARERLERAVSDR 112
+ E W G ++A G G N +I +DCMWSGFSARE+LERAVS++
Sbjct: 77 WVTEMLLENELW-GSPAEEDAFGLGGLGGLTPN--PVILQDCMWSGFSAREKLERAVSEK 133
Query: 113 LAPGAPRGNPPKASAAPDCTPSLEAGNPA--------------PAAPCPLGEPKTQACSG 158
L G RG P S A +P A +PA A P L P +
Sbjct: 134 LQHG--RGPPTAGSTAQ--SPGAGAASPAGRGHGGAAGAGRAGAALPAELAHPAAECVDP 189
Query: 159 S-ESPSDSGKDLPEPSKRGPPHGWPKLCPCLRSGIG---SSQALGPSPP 203
+ P K P P P P P + SG G + A G +PP
Sbjct: 190 AVVFPFPVNKREPAPVPAAPASA-PAAGPAVASGAGIAAPAGAPGVAPP 237
>gi|71774083 myc proto-oncogene protein [Homo sapiens]
Length = 454
Score = 68.9 bits (167), Expect = 3e-12
Identities = 74/230 (32%), Positives = 98/230 (42%), Gaps = 60/230 (26%)
Query: 1 MDYDSYQHYFYDYDCGEDFYRST--------APSEDIWKKFELVPSPPTSPPWGLGPGAG 52
+DYDS Q YFY D E+FY+ APSEDIWKKFEL+P+PP SP +G
Sbjct: 29 LDYDSVQPYFY-CDEEENFYQQQQQSELQPPAPSEDIWKKFELLPTPPLSP----SRRSG 83
Query: 53 DPAPGIGPPEPW------PGG----CTGDEAESRGHSKGWGRNYAS-------------I 89
+P P+ GG T D+ E G S I
Sbjct: 84 LCSPSYVAVTPFSLRGDNDGGGGSFSTADQLEMVTELLGGDMVNQSFICDPDDETFIKNI 143
Query: 90 IRRDCMWSGFSARERLERAVSDRL----APGAPRGNPPKASAAPDCTPS----------- 134
I +DCMWSGFSA +L VS++L A G+P A C+ S
Sbjct: 144 IIQDCMWSGFSAAAKL---VSEKLASYQAARKDSGSPNPARGHSVCSTSSLYLQDLSAAA 200
Query: 135 LEAGNPAPAAPCPLGEPKT-QACSGSES-----PSDSGKDLPEPSKRGPP 178
E +P+ P PL + + ++C+ +S SDS E S +G P
Sbjct: 201 SECIDPSVVFPYPLNDSSSPKSCASQDSSAFSPSSDSLLSSTESSPQGSP 250
>gi|116284398 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 48.5 bits (114), Expect = 4e-06
Identities = 59/222 (26%), Positives = 81/222 (36%), Gaps = 42/222 (18%)
Query: 21 RSTAPSEDIWKKFELVPSPPTSPPWGLGPG----AGDPAPGIGPPEPWPGGCTGDEAESR 76
R P D+ K + +P P S P + P PG GP +P PG +R
Sbjct: 168 RMPPPRPDVGSKPDSIPPPVPSTPRPIQSSPHNRGSPPVPG-GPRQPSPGPTPPPFPGNR 226
Query: 77 GHSKGWGRNYASIIRRDCMWSGFSARERL----ERAVSDR------------------LA 114
G + G G S + S FS R L RA+ D+ +
Sbjct: 227 GTALGGGSIRQSPLSSS---SPFSNRPPLPPTPSRALDDKPPPPPPPVGNRPSIHREAVP 283
Query: 115 PGAPRGNPPKASAAPDCTPSLEAGNPAPAAPCPLGEPKTQACSGSE----------SPSD 164
P P+ N P + P + S +A P P P P + SG++ S S
Sbjct: 284 PPPPQNNKPPVPSTPRPSASSQAPPPPPPPSRPGPPPLPPSSSGNDETPRLPQRNLSLSS 343
Query: 165 SGKDLPEPSKRG--PPHGWPKLCPCLRSGIGSSQALGPSPPL 204
S LP P + G PP + P +R G S L P PP+
Sbjct: 344 STPPLPSPGRSGPLPPPPSERPPPPVRDPPGRSGPLPPPPPV 385
Score = 30.8 bits (68), Expect = 0.85
Identities = 40/169 (23%), Positives = 48/169 (28%), Gaps = 45/169 (26%)
Query: 39 PPTSPPWGLGPGAGDPAPGIGP---PEPWPGGCTGDEAESRGHSKGWGRNYASIIRRDCM 95
PP PP G A +P GP P P PG +G R
Sbjct: 126 PPLLPPGGRSTSAKPFSPPSGPGRFPVPSPGHRSGPPEPQR------------------- 166
Query: 96 WSGFSARERLERAVSDRLAPGAPRGNPPKASAAPDCTPSLEAGNPAPAAPCPLGEPKTQA 155
+R+ P PR P + PD P P P P
Sbjct: 167 ---------------NRMPP--PR---PDVGSKPDSIPPPVPSTPRPIQSSPHNRGSPPV 206
Query: 156 CSGSESPSDSGKDLPEPSKRGPPHGWPKLCPCLRSGIGSSQALGPSPPL 204
G PS P P RG G + +S + SS PPL
Sbjct: 207 PGGPRQPSPGPTPPPFPGNRGTALGGGSI---RQSPLSSSSPFSNRPPL 252
>gi|38373695 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 48.5 bits (114), Expect = 4e-06
Identities = 59/222 (26%), Positives = 81/222 (36%), Gaps = 42/222 (18%)
Query: 21 RSTAPSEDIWKKFELVPSPPTSPPWGLGPG----AGDPAPGIGPPEPWPGGCTGDEAESR 76
R P D+ K + +P P S P + P PG GP +P PG +R
Sbjct: 168 RMPPPRPDVGSKPDSIPPPVPSTPRPIQSSPHNRGSPPVPG-GPRQPSPGPTPPPFPGNR 226
Query: 77 GHSKGWGRNYASIIRRDCMWSGFSARERL----ERAVSDR------------------LA 114
G + G G S + S FS R L RA+ D+ +
Sbjct: 227 GTALGGGSIRQSPLSSS---SPFSNRPPLPPTPSRALDDKPPPPPPPVGNRPSIHREAVP 283
Query: 115 PGAPRGNPPKASAAPDCTPSLEAGNPAPAAPCPLGEPKTQACSGSE----------SPSD 164
P P+ N P + P + S +A P P P P + SG++ S S
Sbjct: 284 PPPPQNNKPPVPSTPRPSASSQAPPPPPPPSRPGPPPLPPSSSGNDETPRLPQRNLSLSS 343
Query: 165 SGKDLPEPSKRG--PPHGWPKLCPCLRSGIGSSQALGPSPPL 204
S LP P + G PP + P +R G S L P PP+
Sbjct: 344 STPPLPSPGRSGPLPPPPSERPPPPVRDPPGRSGPLPPPPPV 385
Score = 30.8 bits (68), Expect = 0.85
Identities = 40/169 (23%), Positives = 48/169 (28%), Gaps = 45/169 (26%)
Query: 39 PPTSPPWGLGPGAGDPAPGIGP---PEPWPGGCTGDEAESRGHSKGWGRNYASIIRRDCM 95
PP PP G A +P GP P P PG +G R
Sbjct: 126 PPLLPPGGRSTSAKPFSPPSGPGRFPVPSPGHRSGPPEPQR------------------- 166
Query: 96 WSGFSARERLERAVSDRLAPGAPRGNPPKASAAPDCTPSLEAGNPAPAAPCPLGEPKTQA 155
+R+ P PR P + PD P P P P
Sbjct: 167 ---------------NRMPP--PR---PDVGSKPDSIPPPVPSTPRPIQSSPHNRGSPPV 206
Query: 156 CSGSESPSDSGKDLPEPSKRGPPHGWPKLCPCLRSGIGSSQALGPSPPL 204
G PS P P RG G + +S + SS PPL
Sbjct: 207 PGGPRQPSPGPTPPPFPGNRGTALGGGSI---RQSPLSSSSPFSNRPPL 252
>gi|217416350 cask-interacting protein 2 isoform b [Homo sapiens]
Length = 1120
Score = 46.6 bits (109), Expect = 1e-05
Identities = 50/181 (27%), Positives = 65/181 (35%), Gaps = 41/181 (22%)
Query: 37 PSPPTSPPWGLGPGAGDPAPGIGPPEP--------WPGGCTGD-EAESRGHSKGWGRNYA 87
P PP PW AG PA PP P PG GD E E+ G +YA
Sbjct: 686 PGPPPGAPWAFSYLAGPPATPPDPPRPKRRSHSLSRPGPTEGDAEGEAEGPVGSTLGSYA 745
Query: 88 SIIRRDCMWSGFSARERLERAVSDRLAPGAPRGN--------------PPK-----ASAA 128
++ RR G SA R +V+ A G PR PPK + +
Sbjct: 746 TLTRR----PGRSALVRTSPSVTPTPARGTPRSQSFALRARRKGPPPPPPKRLSSVSGPS 801
Query: 129 PDCTPSLEAGNPAPAAPCPLGEPKTQACSGSESP---------SDSGKDLPEPSKRGPPH 179
P+ P E+ P A P ++ SE P SD+ ++ P P P
Sbjct: 802 PEPPPLDESPGPKEGATGPRRRTLSEPAGPSEPPGPPAPAGPASDTEEEEPGPEGTPPSR 861
Query: 180 G 180
G
Sbjct: 862 G 862
Score = 34.3 bits (77), Expect = 0.077
Identities = 48/179 (26%), Positives = 67/179 (37%), Gaps = 37/179 (20%)
Query: 39 PPTSPPWGLGPGAGDPAPGIGPPEPWPG---GCTGDE----AESRGHSKGWGRNYASIIR 91
PP PP L +G P+P P + PG G TG +E G S+ G +
Sbjct: 786 PPPPPPKRLSSVSG-PSPEPPPLDESPGPKEGATGPRRRTLSEPAGPSEPPGPPAPAGPA 844
Query: 92 RDCMWSGFSARERLERAVSDRLAPGAPRGNPPKASAAPDCTPSLEAGN------PAPAAP 145
D ++ PG P G PP ++ + P E GN P PA P
Sbjct: 845 SD----------------TEEEEPG-PEGTPPSRGSSGEGLPFAEEGNLTIKQRPKPAGP 887
Query: 146 CPLGEPKTQACSGSESPSDSGKDLPEPSKRGPPHGWPKLCPCLRSGIGSSQALGPSPPL 204
P P + + SD+ K P+ +R P L G+ S+ GP+ PL
Sbjct: 888 PPRETPVPPGLDFNLTESDTVKRRPKCREREPLQ-----TALLAFGVASATP-GPAAPL 940
Score = 30.8 bits (68), Expect = 0.85
Identities = 29/96 (30%), Positives = 39/96 (40%), Gaps = 18/96 (18%)
Query: 102 RERLERAVSDRLAPGAPRGNPPKASAAPDCTPSLEAGNPAPAAPCPLGEPKTQACSGSES 161
RE L+ A+ LA G P A+ P TP G PA+ P EP + G +
Sbjct: 917 REPLQTAL---LAFGVASATPGPAAPLPSPTP----GESPPASSLPQPEPSSLPAQGVPT 969
Query: 162 PSDSGKDLPEPSKRGPPHGWPKLCPCLRSGIGSSQA 197
P P P+ + P + PC G+ SS A
Sbjct: 970 PL-----APSPAMQ------PPVPPCPGPGLESSAA 994
Score = 30.4 bits (67), Expect = 1.1
Identities = 29/101 (28%), Positives = 36/101 (35%), Gaps = 27/101 (26%)
Query: 128 APDCTPSLEAGNPAPAAPCPLGEPKTQACSGSES-----------PSDSGKDLPEPSKRG 176
+P+ ++ G P P P P +Q G+ S P SG D P +R
Sbjct: 591 SPELQAAMAGGGPEP-LPLPPARSPSQESIGARSRGSGHSQEQPAPQPSGGDPSPPQERN 649
Query: 177 PPHGW---PKLCPCL------------RSGIGSSQALGPSP 202
P G PKLC L G SS A GP P
Sbjct: 650 LPEGTERPPKLCSSLPGQGPPPYVFMYPQGSPSSPAPGPPP 690
Score = 27.3 bits (59), Expect = 9.4
Identities = 36/142 (25%), Positives = 46/142 (32%), Gaps = 30/142 (21%)
Query: 34 ELVPSPPTSPPWGLGPGAGDPAPGIGPPEPWPGGCTGDEAESRGHSKGWGRNYASIIRRD 93
E +P PP P GA G +P P GD + + + G
Sbjct: 604 EPLPLPPARSPSQESIGARSRGSGHSQEQPAPQPSGGDPSPPQERNLPEGT--------- 654
Query: 94 CMWSGFSARERLERAVSDRLAPGAPRGNPPKASAAPDCTPSLEAGNPAPAAPCPLGEPKT 153
ER + S PG +G PP P +PS A P P AP
Sbjct: 655 ---------ERPPKLCSS--LPG--QGPPPYVFMYPQGSPSSPAPGPPPGAP-------- 693
Query: 154 QACSGSESPSDSGKDLPEPSKR 175
A S P + D P P +R
Sbjct: 694 WAFSYLAGPPATPPDPPRPKRR 715
>gi|217416347 cask-interacting protein 2 isoform a [Homo sapiens]
Length = 1202
Score = 46.6 bits (109), Expect = 1e-05
Identities = 50/181 (27%), Positives = 65/181 (35%), Gaps = 41/181 (22%)
Query: 37 PSPPTSPPWGLGPGAGDPAPGIGPPEP--------WPGGCTGD-EAESRGHSKGWGRNYA 87
P PP PW AG PA PP P PG GD E E+ G +YA
Sbjct: 768 PGPPPGAPWAFSYLAGPPATPPDPPRPKRRSHSLSRPGPTEGDAEGEAEGPVGSTLGSYA 827
Query: 88 SIIRRDCMWSGFSARERLERAVSDRLAPGAPRGN--------------PPK-----ASAA 128
++ RR G SA R +V+ A G PR PPK + +
Sbjct: 828 TLTRR----PGRSALVRTSPSVTPTPARGTPRSQSFALRARRKGPPPPPPKRLSSVSGPS 883
Query: 129 PDCTPSLEAGNPAPAAPCPLGEPKTQACSGSESP---------SDSGKDLPEPSKRGPPH 179
P+ P E+ P A P ++ SE P SD+ ++ P P P
Sbjct: 884 PEPPPLDESPGPKEGATGPRRRTLSEPAGPSEPPGPPAPAGPASDTEEEEPGPEGTPPSR 943
Query: 180 G 180
G
Sbjct: 944 G 944
Score = 34.3 bits (77), Expect = 0.077
Identities = 48/179 (26%), Positives = 67/179 (37%), Gaps = 37/179 (20%)
Query: 39 PPTSPPWGLGPGAGDPAPGIGPPEPWPG---GCTGDE----AESRGHSKGWGRNYASIIR 91
PP PP L +G P+P P + PG G TG +E G S+ G +
Sbjct: 868 PPPPPPKRLSSVSG-PSPEPPPLDESPGPKEGATGPRRRTLSEPAGPSEPPGPPAPAGPA 926
Query: 92 RDCMWSGFSARERLERAVSDRLAPGAPRGNPPKASAAPDCTPSLEAGN------PAPAAP 145
D ++ PG P G PP ++ + P E GN P PA P
Sbjct: 927 SD----------------TEEEEPG-PEGTPPSRGSSGEGLPFAEEGNLTIKQRPKPAGP 969
Query: 146 CPLGEPKTQACSGSESPSDSGKDLPEPSKRGPPHGWPKLCPCLRSGIGSSQALGPSPPL 204
P P + + SD+ K P+ +R P L G+ S+ GP+ PL
Sbjct: 970 PPRETPVPPGLDFNLTESDTVKRRPKCREREPLQ-----TALLAFGVASATP-GPAAPL 1022
Score = 30.8 bits (68), Expect = 0.85
Identities = 29/96 (30%), Positives = 39/96 (40%), Gaps = 18/96 (18%)
Query: 102 RERLERAVSDRLAPGAPRGNPPKASAAPDCTPSLEAGNPAPAAPCPLGEPKTQACSGSES 161
RE L+ A+ LA G P A+ P TP G PA+ P EP + G +
Sbjct: 999 REPLQTAL---LAFGVASATPGPAAPLPSPTP----GESPPASSLPQPEPSSLPAQGVPT 1051
Query: 162 PSDSGKDLPEPSKRGPPHGWPKLCPCLRSGIGSSQA 197
P P P+ + P + PC G+ SS A
Sbjct: 1052 PL-----APSPAMQ------PPVPPCPGPGLESSAA 1076
Score = 30.4 bits (67), Expect = 1.1
Identities = 29/101 (28%), Positives = 36/101 (35%), Gaps = 27/101 (26%)
Query: 128 APDCTPSLEAGNPAPAAPCPLGEPKTQACSGSES-----------PSDSGKDLPEPSKRG 176
+P+ ++ G P P P P +Q G+ S P SG D P +R
Sbjct: 673 SPELQAAMAGGGPEP-LPLPPARSPSQESIGARSRGSGHSQEQPAPQPSGGDPSPPQERN 731
Query: 177 PPHGW---PKLCPCL------------RSGIGSSQALGPSP 202
P G PKLC L G SS A GP P
Sbjct: 732 LPEGTERPPKLCSSLPGQGPPPYVFMYPQGSPSSPAPGPPP 772
Score = 27.3 bits (59), Expect = 9.4
Identities = 36/142 (25%), Positives = 46/142 (32%), Gaps = 30/142 (21%)
Query: 34 ELVPSPPTSPPWGLGPGAGDPAPGIGPPEPWPGGCTGDEAESRGHSKGWGRNYASIIRRD 93
E +P PP P GA G +P P GD + + + G
Sbjct: 686 EPLPLPPARSPSQESIGARSRGSGHSQEQPAPQPSGGDPSPPQERNLPEGT--------- 736
Query: 94 CMWSGFSARERLERAVSDRLAPGAPRGNPPKASAAPDCTPSLEAGNPAPAAPCPLGEPKT 153
ER + S PG +G PP P +PS A P P AP
Sbjct: 737 ---------ERPPKLCSS--LPG--QGPPPYVFMYPQGSPSSPAPGPPPGAP-------- 775
Query: 154 QACSGSESPSDSGKDLPEPSKR 175
A S P + D P P +R
Sbjct: 776 WAFSYLAGPPATPPDPPRPKRR 797
>gi|162329583 cleavage and polyadenylation specific factor 6, 68 kD
subunit [Homo sapiens]
Length = 551
Score = 44.7 bits (104), Expect = 6e-05
Identities = 49/179 (27%), Positives = 56/179 (31%), Gaps = 48/179 (26%)
Query: 37 PSPPTSPPWGLGPGAGDPAPGIGPPEPWPGGCTGDEAESRGHSKGWGRNYASIIRRDCMW 96
P PP PP GP G P PG P P G +RG
Sbjct: 237 PRPPLGPPGPPGP-PGPPPPGQVLPPPLAG------PPNRG------------------- 270
Query: 97 SGFSARERLERAVSDRLAPGAPRGNPPKASAAPDCTPSLEAGNPAPAAPCP-LGEPKTQA 155
+R L PG P G PP P P + P P P P G P
Sbjct: 271 ---------DRPPPPVLFPGQPFGQPPLGPLPPGPPPPVPGYGPPPGPPPPQQGPPPPPG 321
Query: 156 CSGSESPSDSGKDL---PEPSKRGPPHGWPKLCPCL---------RSGIGSSQALGPSP 202
P G L P P GPP G P P + SG+ +S + GP P
Sbjct: 322 PFPPRPPGPLGPPLTLAPPPHLPGPPPGAPPPAPHVNPAFFPPPTNSGMPTSDSRGPPP 380
Score = 31.2 bits (69), Expect = 0.65
Identities = 17/32 (53%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 35 LVPSPPTSPPWGLGPGAGDPAPGIGPPEPWPG 66
L P PP P G GP G P P GPP P PG
Sbjct: 292 LPPGPPPPVP-GYGPPPGPPPPQQGPPPP-PG 321
Score = 29.3 bits (64), Expect = 2.5
Identities = 33/109 (30%), Positives = 34/109 (31%), Gaps = 17/109 (15%)
Query: 98 GFSARERLERAV--SDRLAPGAPRGNPPKASAAPDCTPSLEAGNPAPAAPCPLGEPKTQA 155
G R R AV DR A G PP A P G P P P
Sbjct: 200 GGRGRGRFPGAVPGGDRFPGPAGPGGPPPPFPAGQTPPRPPLGPPGPPGP---------- 249
Query: 156 CSGSESPSDSGKDLPEPSKRGPPHGWPKLCPCLRSGIGSSQ-ALGPSPP 203
P G+ LP P P G P L G Q LGP PP
Sbjct: 250 ----PGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQPFGQPPLGPLPP 294
>gi|237512940 early growth response 4 [Homo sapiens]
Length = 589
Score = 42.4 bits (98), Expect = 3e-04
Identities = 36/106 (33%), Positives = 44/106 (41%), Gaps = 25/106 (23%)
Query: 55 APGIGPPEPWP------GGCTGDEAESRGHSKGWGRNYASIIRRDCMWSGFSARERLERA 108
A G+G PEP P GGC G G +++ RR G +AR R RA
Sbjct: 4 ARGVGSPEPAPPQLYKWGGC------------GLGEPGSALERR-----GAAARGRCGRA 46
Query: 109 VSDRLAPGAPRGNPPKASAAPDCTPSLEAGNPAPAAPCPLGEPKTQ 154
+ RL PRG PK A S+ G P P A P P+ Q
Sbjct: 47 RAPRLPDSFPRGECPKPGAR--APRSVRCGEPLPPASPPPARPQAQ 90
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 42.4 bits (98), Expect = 3e-04
Identities = 49/170 (28%), Positives = 62/170 (36%), Gaps = 40/170 (23%)
Query: 37 PSPPTSPPWG-LGPGAGDPAPGIGPPEPWPGGCTGDEAESRGHSKGWGRNYASIIRRDCM 95
P+ P SP W P A P+P GP P P G A + KG
Sbjct: 954 PATP-SPKWAPTPPAATPPSPKGGPATPSPKGAPTPPAATPPSPKG-------------- 998
Query: 96 WSGFSARERLERAVSDRLAPGAPRGNP-----PK-ASAAPDCTPSLEAGNPA-------- 141
G + + P +P+G+P PK AS P TP G+PA
Sbjct: 999 --GPATPSPKGAPTPPAVTPPSPKGSPAATPFPKGASTPPAATPPSPKGSPAATPLPKGA 1056
Query: 142 ---PAA--PCPLGEPKTQACSGSESPSDSGKDLPEPSKRGPPHGWPKLCP 186
PAA P P G P T + G+ +P + P K GP PK P
Sbjct: 1057 PTTPAATLPSPKGGPATPSLKGAPTPPAA---TPPSPKGGPATPSPKGAP 1103
Score = 42.0 bits (97), Expect = 4e-04
Identities = 58/198 (29%), Positives = 71/198 (35%), Gaps = 30/198 (15%)
Query: 31 KKFELVPSP---PTSP-PWGLG--PGAGDPAPGIGPPEPWPGGCTGDEAESRGHSKGW-- 82
KK P+P P SP P G P A P+P GP P P A + KG
Sbjct: 919 KKARATPAPKGIPASPSPKGAPTPPAATPPSPKGGPATPSPKWAPTPPAATPPSPKGGPA 978
Query: 83 -----GRNYASIIRRDCMWSGFSARERLERAVSDRLAPGAPRGNP-----PK-ASAAPDC 131
G G + + P +P+G+P PK AS P
Sbjct: 979 TPSPKGAPTPPAATPPSPKGGPATPSPKGAPTPPAVTPPSPKGSPAATPFPKGASTPPAA 1038
Query: 132 TPSLEAGNPAPAAPCPLGEPKTQACS------GSESPSDSGKDLPEPSKRGPPHGWPKLC 185
TP G+PA A P P G P T A + G +PS G P P PP PK
Sbjct: 1039 TPPSPKGSPA-ATPLPKGAPTTPAATLPSPKGGPATPSLKG--APTPPAATPPS--PKGG 1093
Query: 186 PCLRSGIGSSQALGPSPP 203
P S G+ +PP
Sbjct: 1094 PATPSPKGAPMPPAATPP 1111
Score = 39.3 bits (90), Expect = 0.002
Identities = 45/168 (26%), Positives = 61/168 (36%), Gaps = 31/168 (18%)
Query: 37 PSPPTSPPWGLGPGAGDPAPGIGPPEPWPGGCTGDEAESRGHSKGWGRNYASIIRRDCMW 96
PSP +P P A P+P GP P P G A + KG
Sbjct: 1235 PSPKGAPTT---PAATPPSPKGGPATPPPKGAPTPPAATPPSLKG--------------- 1276
Query: 97 SGFSARERLERAVSDRLAPGAPRGNPPKASAAPDCTPSLEAGNPAPAAPCPLGEPKTQAC 156
G + + P +P+G P A++ P P+ PA P P G P T
Sbjct: 1277 -GLATPPHKGAPNPAVVTPPSPKGGP--ATSPPKGAPT----PPAATPPSPKGSPGTPPP 1329
Query: 157 SGSESPSDSGKDLPEPSKRGPPHGWPKLCPCLRSG-IGSSQALGPSPP 203
G+ +P + PS +G P P P + G S GP+PP
Sbjct: 1330 KGAPTP----PAVTPPSPKGTP-TLPATTPSSKGGPTTPSSKEGPTPP 1372
Score = 38.1 bits (87), Expect = 0.005
Identities = 40/147 (27%), Positives = 52/147 (35%), Gaps = 8/147 (5%)
Query: 37 PSPPTSPPWGLGPGAGDPAPGIGPPEPWPGGCTGDEAESRGHSKGW--GRNYASIIRRDC 94
PSP +P P A P+P GP P P G A + KG +
Sbjct: 980 PSPKGAPT---PPAATPPSPKGGPATPSPKGAPTPPAVTPPSPKGSPAATPFPKGASTPP 1036
Query: 95 MWSGFSARERLERAVSDRLAPGAPRGNPPKASAAPDCTPSLEAGNPAPAA--PCPLGEPK 152
+ S + + AP P P P TPSL+ PAA P P G P
Sbjct: 1037 AATPPSPKGSPAATPLPKGAPTTPAATLPSPKGGP-ATPSLKGAPTPPAATPPSPKGGPA 1095
Query: 153 TQACSGSESPSDSGKDLPEPSKRGPPH 179
T + G+ P + P+ PPH
Sbjct: 1096 TPSPKGAPMPPAATPPSPKGGLATPPH 1122
Score = 37.7 bits (86), Expect = 0.007
Identities = 46/173 (26%), Positives = 60/173 (34%), Gaps = 28/173 (16%)
Query: 37 PSPPTSPPWGLGPGAGDPAPGIGPPEPWPGGCTGDEAESRGHSKGWGRNYASIIRRDCMW 96
P+ P+ P A P+P GP P P G A + KG
Sbjct: 1071 PATPSLKGAPTPPAATPPSPKGGPATPSPKGAPMPPAATPPSPKG--------------- 1115
Query: 97 SGFSARERLERAVSDRLAPGAPRGN----PPK-ASAAPDCTPSLEAGNPAPAAPCPLGEP 151
G + + P +P+G PPK A P TP G A P P G P
Sbjct: 1116 -GLATPPHKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKG--GLATPPPKGAP 1172
Query: 152 KTQACSGSESPSDSGKDLPEPSKRGPPHGWPKLCPCLRSGIGSSQALG-PSPP 203
T A + PS G L PS +G P P + G+ + G P+ P
Sbjct: 1173 TTPAAT---PPSPKG-GLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTP 1221
Score = 36.6 bits (83), Expect = 0.015
Identities = 49/179 (27%), Positives = 62/179 (34%), Gaps = 34/179 (18%)
Query: 37 PSPP----TSPPWGLG--PGAGDPAPGIGPPEPWPGGCTGDEAESRGHSKGWGRNYASII 90
PSP T PP G P A P+P G P P G A + KG
Sbjct: 1157 PSPKGGLATPPPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKG--------- 1207
Query: 91 RRDCMWSGFSARERLERAVSDRLAPGAPRG-----NPPKASAAPDCTPSLEAGNPAPAAP 145
G + + P +P+G +P A P TP G PA P
Sbjct: 1208 -------GLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKG--GPATP 1258
Query: 146 CPLGEPKTQACSGSESPSDSGKDLPEPSKRGPPHGWPKLCPCLRSGIGSSQALG-PSPP 203
P G P A + PS G L P +G P+ P + G +S G P+PP
Sbjct: 1259 PPKGAPTPPAAT---PPSLKG-GLATPPHKGAPNPAVVTPPSPKGGPATSPPKGAPTPP 1313
Score = 33.5 bits (75), Expect = 0.13
Identities = 42/163 (25%), Positives = 60/163 (36%), Gaps = 26/163 (15%)
Query: 37 PSPPTSPPWGLG-PGAGDPAPGIGPPEPWPGGCTGDEA-----ESRGHSKGWGRNYASII 90
P+PP + P G P P+P GP P P G A + + R A+
Sbjct: 1369 PTPPAATPSHKGGPAMTPPSPKRGPAIPSPKGDPTSPAVIPLSPKKAPATPVTREGAATP 1428
Query: 91 RRDCMWSGFSARERLERAVSDRLAPGAP-----RGNP---------PKASAAPDCTPSLE 136
+ + L++A + G P +G+P PK AP +
Sbjct: 1429 SKGDLTPPAVTPVSLKKAPATSAPKGGPATPSSKGDPTLPAVTPPSPKEPPAPKQVATSS 1488
Query: 137 AGNPAPAAPCPLGEPKTQACSGSESPSDSGKDLP-EPSKRGPP 178
+ APA P P+G P A S S K++P PS R P
Sbjct: 1489 SPKKAPATPAPMGAPTLPAVIPS-----SPKEVPATPSSRRDP 1526
Score = 32.3 bits (72), Expect = 0.29
Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 9/90 (10%)
Query: 118 PRGNPPKASAAPDCTPSLEAGNPAP----AAPCPLGEPKTQACSGSESPSDSGKDLPEPS 173
P+ P A+ AP P+L + +P A P P G P + + G+ +P + P
Sbjct: 896 PKEGP--ATPAPKQAPALSMTSSSPKKARATPAPKGIPASPSPKGAPTPPAA---TPPSP 950
Query: 174 KRGPPHGWPKLCPCLRSGIGSSQALGPSPP 203
K GP PK P + S GP+ P
Sbjct: 951 KGGPATPSPKWAPTPPAATPPSPKGGPATP 980
Score = 31.2 bits (69), Expect = 0.65
Identities = 29/90 (32%), Positives = 36/90 (40%), Gaps = 5/90 (5%)
Query: 114 APGAPRGNPPKASAAPDCTPSLEAGNPAPAAPCPLGEPKTQACSGSESPSDSGKDLPEPS 173
AP P +AS+ P TPS G P+P L P + S E+P+ P P
Sbjct: 1570 APATPSSK--EASSPPAVTPSTYKGAPSPKE--LLIPPAVTSPSPKEAPTPPAVTPPSPE 1625
Query: 174 KRGPPHGWPKLCPCLRSGIGSSQALGPSPP 203
K GP PK P SS P+ P
Sbjct: 1626 K-GPATPAPKGTPTSPPVTPSSLKDSPTSP 1654
Score = 30.0 bits (66), Expect = 1.4
Identities = 31/119 (26%), Positives = 47/119 (39%), Gaps = 30/119 (25%)
Query: 113 LAPGAPRGNPPKASAAPDCT-PSLEAGNPAPAAPCPLGEPKTQACSGS---ESPSD---- 164
+ P +P +A P T PS E G PA P P G P + + S +SP+
Sbjct: 1601 IPPAVTSPSPKEAPTPPAVTPPSPEKG---PATPAPKGTPTSPPVTPSSLKDSPTSPASV 1657
Query: 165 ---SGKDLPE-----PSKRGP-----------PHGWPKLCPCLRSGIGSSQALGPSPPL 204
G +P+ P+K+GP P P + R G + ++ SPP+
Sbjct: 1658 TCKMGATVPQASKGLPAKKGPTALKEVLVAPAPESTPIITAPTRKGPQTKKSSATSPPI 1716
Score = 27.7 bits (60), Expect = 7.2
Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Query: 110 SDRLAPGAPRGNPPKASAAPDCTPSLEAGNPAPAAPCP--LGEPKTQACSGSESPSDSGK 167
S + A G + PK AP P +A P AA L +P++ + S + SP S
Sbjct: 1745 SSKTAKGKDASHSPKGPLAP---PESKASTPLTAAAFEKVLPKPESASVSAAPSPPVSLP 1801
Query: 168 DLPEPSKRGPP 178
P P PP
Sbjct: 1802 LAPSPVPTLPP 1812
Score = 27.3 bits (59), Expect = 9.4
Identities = 21/67 (31%), Positives = 25/67 (37%), Gaps = 5/67 (7%)
Query: 122 PPKASAAPDCTPSLEAGNPAPAAPCPLGEPKTQACSGSESPSDSGKDLPEPSKRGPPHGW 181
P SA+ PS P +P P PK Q PS G L PSK P
Sbjct: 1783 PKPESASVSAAPSPPVSLPLAPSPVPTLPPKQQFL-----PSSPGLVLESPSKPLAPADE 1837
Query: 182 PKLCPCL 188
+L P +
Sbjct: 1838 DELLPLI 1844
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 41.2 bits (95), Expect = 6e-04
Identities = 48/175 (27%), Positives = 64/175 (36%), Gaps = 16/175 (9%)
Query: 34 ELVPSPPTSP--PWGLGPGAGD-PAPGIGP-PEPWPGGCTGDEAES--RGHSKGWGRNYA 87
E P+ P P P L AG P PG GP P P PG G A G + ++A
Sbjct: 151 EPAPAGPAKPAGPAALAARAGPGPGPGPGPGPGPGPGKPAGPGAAQTLNGSAALLNSHHA 210
Query: 88 SIIRRDCMWSGFSARERLERAVSDRLAPGAPRGNPPKASAAPDCTPSLEAGNPAPAAPCP 147
+ + +G +A L + APG PP AA P+ + APA P
Sbjct: 211 AAPAVSLVNNGPAALLPLPKPA----APGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAP 266
Query: 148 LGEPKTQACSGSESPSDSGKDLPEPSKRGPPHGWPKLCPCLRSGIGSSQALGPSP 202
P P+ + P GPP P + P + G S P+P
Sbjct: 267 AAAPP------PPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAP 315
Score = 34.3 bits (77), Expect = 0.077
Identities = 29/101 (28%), Positives = 37/101 (36%), Gaps = 12/101 (11%)
Query: 114 APGAPRGNPPKASAAPDCTPSLEAGNPAPAAP-CPLG--------EPKTQACSGSESPSD 164
APGA PP A P G P+P P P G P + +GS +P
Sbjct: 82 APGAAPEPPPAGRARPGGGGPQRPGPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVP 141
Query: 165 SGKDL---PEPSKRGPPHGWPKLCPCLRSGIGSSQALGPSP 202
+ + PEP+ GP R+G G GP P
Sbjct: 142 AAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGPGPGP 182
Score = 32.7 bits (73), Expect = 0.22
Identities = 48/171 (28%), Positives = 58/171 (33%), Gaps = 40/171 (23%)
Query: 42 SPPWGLGPGAGDPAPGI--GPPEPWPGGCTGDEAESRGHSKGWGRNYASIIRRDCMWSGF 99
SP G G PA G PEP P G +R G R RR + +G
Sbjct: 66 SPAGAAGAGPAAPAEGAPGAAPEPPPAG------RARPGGGGPQRPGPPSPRRPLVPAG- 118
Query: 100 SARERLERAVSDRLAPGAPRGNPPKASAAPDCTP-----SLEAG-NPAPAAPCPLGEPKT 153
AP A + PP +A C P ++ AG PAPA P P
Sbjct: 119 -------------PAPPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAA 165
Query: 154 QACSGSESPSDSGKDLPEPSKRGPPHGWPKLCPCLRSGIGSSQALGPSPPL 204
A P P P GP G P +G G++Q L S L
Sbjct: 166 LAARAGPGPGPG----PGPGP-GPGPGKP-------AGPGAAQTLNGSAAL 204
Score = 31.2 bits (69), Expect = 0.65
Identities = 26/90 (28%), Positives = 36/90 (40%), Gaps = 14/90 (15%)
Query: 117 APRGNPPKASAAPDCTPSLEAGNPAPAAPCPLGEPKTQACSGSESPSDSGKDLP---EPS 173
APR +A+AA + +G+PA AA P A + P +G+ P P
Sbjct: 44 APRTPEVRAAAAGALGNHVVSGSPAGAAGAGPAAPAEGAPGAAPEPPPAGRARPGGGGPQ 103
Query: 174 KRGPPHGWPKLCPCLRSGIGSSQALGPSPP 203
+ GPP L P GP+PP
Sbjct: 104 RPGPPSPRRPLVPA-----------GPAPP 122
>gi|42544125 splicing factor 1 isoform 2 [Homo sapiens]
Length = 638
Score = 41.2 bits (95), Expect = 6e-04
Identities = 39/150 (26%), Positives = 53/150 (35%), Gaps = 15/150 (10%)
Query: 35 LVPSPPTS--PPWGLGPGAGDPAPGIGPPEPW-------PGGCTGDEAESRGHSKGWGRN 85
++P PP PP P P P GP PW P + + W +N
Sbjct: 469 MMPPPPMGMMPPPPPPPSGQPPPPPSGPLPPWQQQQQQPPPPPPPSSSMASSTPLPWQQN 528
Query: 86 YASIIRRDCMWSGFSARERLERAVSDRLAPGAPR--GNPPKASAAPDCTPSLEAGNPAPA 143
+ S +++ A + +PGAP+ GNP P P L G P P
Sbjct: 529 TTTTTTSAGTGSIPPWQQQQAAAAA---SPGAPQMQGNPTMVPLPPGVQPPLPPGAPPPP 585
Query: 144 APCPLGEPKTQ-ACSGSESPSDSGKDLPEP 172
P P G G + PS +D P P
Sbjct: 586 PPPPPGSAGMMIPPRGGDGPSHESEDFPRP 615
>gi|7657387 CCR4-NOT transcription complex, subunit 3 [Homo sapiens]
Length = 753
Score = 41.2 bits (95), Expect = 6e-04
Identities = 41/142 (28%), Positives = 56/142 (39%), Gaps = 7/142 (4%)
Query: 60 PPEPWPGGCTGDEAESRGHSKGWGRNYASIIRRDCMWSGFSARERLERAVSDRLAPGAPR 119
P P P CT + +E K GR+ S + + +G + S + P P
Sbjct: 269 PIPPSPANCTTENSED---DKKRGRSTDSEVSQSPAKNGSKPVHSNQHPQSPAVPPTYPS 325
Query: 120 GNPPKASAAPDCTPSLEAGNPAPAAPCPLGEPKTQAC--SGSESPSDSGKDLPEPSKRGP 177
G PP ASA TP G PAPAAP PK S +P+ + + P+ GP
Sbjct: 326 GPPPAASAL-STTPG-NNGVPAPAAPPSALGPKASPAPSHNSGTPAPYAQAVAPPAPSGP 383
Query: 178 PHGWPKLCPCLRSGIGSSQALG 199
P+ SG G + G
Sbjct: 384 STTQPRPPSVQPSGGGGGGSGG 405
Score = 32.3 bits (72), Expect = 0.29
Identities = 37/157 (23%), Positives = 49/157 (31%), Gaps = 26/157 (16%)
Query: 42 SPPWGLGPGAGDPAPGIGPPEPWPGGCTGD--EAESRGHSKGWGR-------NYASIIRR 92
+PP GP P P P GG +G + S S G G +Y+S++
Sbjct: 376 APPAPSGPSTTQPRPPSVQPSGGGGGGSGGGGSSSSSNSSAGGGAGKQNGATSYSSVVAD 435
Query: 93 DCMWSGFSARERLERAVSDRLAPGAPRGNPPKASAAPDCTPSLEAGNPAPAA-------- 144
S+ + P P PP S P AG AP +
Sbjct: 436 SPAEVALSSSGGNNASSQALGPPSGPHNPPPSTSKEPSAAAPTGAGGVAPGSGNNSGGPS 495
Query: 145 ---PCPLGEPKTQACSGSESPSDSGKDLPEPSKRGPP 178
P P+ P S +PS S GPP
Sbjct: 496 LLVPLPVNPP------SSPTPSFSDAKAAGALLNGPP 526
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 40.8 bits (94), Expect = 8e-04
Identities = 48/168 (28%), Positives = 62/168 (36%), Gaps = 49/168 (29%)
Query: 50 GAGDPAPGIGPP-EPWPGGCT--------GDEAESRGHSKGWGRNYASIIRRDCMWSGFS 100
G G+P+PG G P + P G T G EA G + G G Y II+ S
Sbjct: 335 GGGEPSPGAGEPSKAGPSGATAGASGRATGPEAAGGGGAGGGGGGYRPIIQ--------S 386
Query: 101 ARERLERAVSDRLAPGAPRGNPPKASAAPDCTPSLEAGNPA------------------- 141
+ + A GA R PP+++A P C G PA
Sbjct: 387 PGYKTGKGGYGAAAGGATRPPPPRSTATPKCQ---SLGGPAAAYATGKASGAGGAGGQAY 443
Query: 142 -PAAPCPLGEPKT--------QACSGSESPSDSGKDLPEPSKRGPPHG 180
P P L P+ QA S++PS SG P+P PP G
Sbjct: 444 SPGQPQGLLGPQAYGQGFGGGQAQDLSKAPSYSGGP-PQPPSGPPPPG 490
>gi|7662234 rab11-family interacting protein 3 isoform 1 [Homo
sapiens]
Length = 756
Score = 40.4 bits (93), Expect = 0.001
Identities = 45/162 (27%), Positives = 55/162 (33%), Gaps = 34/162 (20%)
Query: 35 LVPSPPTSPPWGLGPGAGDPAPGIGPPEPWPGGCTGDEAESRGHSKGWGRNYASIIRRDC 94
+ +PP SPP PG P+P PGG G A R A + D
Sbjct: 1 MASAPPASPPGSEPPG----------PDPEPGGPDGPGAAQLAPGPAELRLGAPVGGPDP 50
Query: 95 MWSGFSARERLERAVSDRLAPGAPRGNPPKASAAPDCTPSLEAG--NPAPAAPCPLGEPK 152
G D APGA + SA P P LE G +P P+AP P P+
Sbjct: 51 QSPGL-----------DEPAPGAAADGGARWSAGP--APGLEGGPRDPGPSAPPPRSGPR 97
Query: 153 TQACSGSESPSDSGKDLPEPSKRGPPHGW--------PKLCP 186
Q S + P P + P W P CP
Sbjct: 98 GQLASPDAPGPGPRSEAPLP-ELDPLFSWTEEPEECGPASCP 138
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 40.0 bits (92), Expect = 0.001
Identities = 47/158 (29%), Positives = 57/158 (36%), Gaps = 49/158 (31%)
Query: 40 PTSPPWGLG-PGA----GDPAPGIGPPEPWPGGCTGDEAESRGHSKGWGRNYASIIRRDC 94
P PP G+G PGA G+P P P GG G + E RG
Sbjct: 1268 PQGPPGGIGNPGAVGEKGEPGEAGEPGLPGEGGPPGPKGE-RG----------------- 1309
Query: 95 MWSGFSARERLERAVSDRLAPGAPRGNP----PKASAAPDCTPSLEAGNPAPAA-PCPLG 149
E+ E S P P+G P PK S P P G+P P P P G
Sbjct: 1310 --------EKGESGPSGAAGPPGPKGPPGDDGPKGSPGPVGFP----GDPGPPGEPGPAG 1357
Query: 150 EPKTQACSGSE-------SPSDSGKDLPE--PSKRGPP 178
+ G + SP +G+ P P KRGPP
Sbjct: 1358 QDGPPGDKGDDGEPGQTGSPGPTGEPGPSGPPGKRGPP 1395
Score = 30.0 bits (66), Expect = 1.4
Identities = 50/203 (24%), Positives = 70/203 (34%), Gaps = 34/203 (16%)
Query: 11 YDYDCGEDFYRSTAPSEDIWKKFELVPSPPTSPPWG--LGPGAGDPAPGIGPPEPWPGGC 68
YDY ED+Y + + + + E P PT P G + D + P P G
Sbjct: 338 YDYVPSEDYYTPSPYDDLTYGEGEENPDQPTDPGAGAEIPTSTADTSNSSNPAPPPGEGA 397
Query: 69 TGDEAESRGHS-KGWGRNYASIIRRDCMWSGFSARERL---ERAVSDRL--APGAPRGNP 122
E E + + NY D + S+ + A D + G PRG
Sbjct: 398 DDLEGEFTEETIRNLDENY-----YDPYYDPTSSPSEIGPGMPANQDTIYEGIGGPRGEK 452
Query: 123 PKASAAPDCTPS-LEAGNPAPAAPCPL-GEPKTQACSGSESPSDSGKDLPEPSKRGPPHG 180
+ P L G P P P L G P T +G + +P +RGPP
Sbjct: 453 GQKGEPAIIEPGMLIEGPPGPEGPAGLPGPPGTMGPTG---------QVGDPGERGPPG- 502
Query: 181 WPKLCPCLRSGIGSSQALGPSPP 203
R G+ + L P PP
Sbjct: 503 --------RPGLPGADGL-PGPP 516
Score = 30.0 bits (66), Expect = 1.4
Identities = 23/82 (28%), Positives = 29/82 (35%), Gaps = 4/82 (4%)
Query: 103 ERLERAVSDRLAPGAPRGNPPKASAAPDCTPSLEAGNPAPAAPCPLGEPKTQACSGSESP 162
+R E + P P G + P E G+P P P P GE +G E
Sbjct: 980 QRGETGFQGKTGPPGPPGVVGPQGPTGETGPMGERGHPGP--PGPPGEQGLPGLAGKEGT 1037
Query: 163 SDSGKDLPEPSKRGPP--HGWP 182
P K GPP G+P
Sbjct: 1038 KGDPGPAGLPGKDGPPGLRGFP 1059
Score = 28.9 bits (63), Expect = 3.2
Identities = 34/128 (26%), Positives = 45/128 (35%), Gaps = 15/128 (11%)
Query: 52 GDPAPGIGPPEPW-PGGCTGDEAESRGHSKGWGRNYASIIRRDCMWSGFSARERLERAVS 110
G P P GPP P P G G + +S + + + +I G +
Sbjct: 1453 GSPGPD-GPPGPMGPPGLPGLKGDSGPKGE---KGHPGLI-------GLIGPPGEQGEKG 1501
Query: 111 DRLAPGAPRGNPPKASAAPDCTPSLEAGNPAPAAPCPLGEPKTQACSGSESPSDSGKDLP 170
DR PG + PK PS G P P P G P + GS P+ +
Sbjct: 1502 DRGLPGPQGSSGPKGEQGIT-GPSGPIGPPGP--PGLPGPPGPKGAKGSSGPTGPKGEAG 1558
Query: 171 EPSKRGPP 178
P GPP
Sbjct: 1559 HPGPPGPP 1566
>gi|169213235 PREDICTED: hypothetical protein [Homo sapiens]
Length = 308
Score = 40.0 bits (92), Expect = 0.001
Identities = 47/161 (29%), Positives = 62/161 (38%), Gaps = 15/161 (9%)
Query: 24 APSEDIWKKFELVPSPPTSPPWGLGPGAGD-PAPGIGPPEPWPGGCTGDEAESRGHSKGW 82
AP +++ P+PP PP G GP + P G+ P G G A G +
Sbjct: 56 APGSPLYRVSAPPPAPPPPPPPG-GPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSA 114
Query: 83 GRNYASIIRRDCMWSGFSARERLERAVSDRLAPGAPRGNPPKASAAPDCTPSLEAGNPAP 142
GR S G AR ++ A+ +PG +PP+AS P P EA +
Sbjct: 115 GRLRCSAAALSAAQRGGPARAQVPPALR-TFSPGP--ASPPRAS--PGGRPGSEARGRSG 169
Query: 143 A-----APCPLGEPKTQACSGSESPSDSGKDLPEPSKRGPP 178
A P G P SG S D L + RGPP
Sbjct: 170 AECARRVPLHHGPP---GASGVGSERDRKFQLHQTPARGPP 207
>gi|169212744 PREDICTED: hypothetical protein [Homo sapiens]
Length = 308
Score = 40.0 bits (92), Expect = 0.001
Identities = 47/161 (29%), Positives = 62/161 (38%), Gaps = 15/161 (9%)
Query: 24 APSEDIWKKFELVPSPPTSPPWGLGPGAGD-PAPGIGPPEPWPGGCTGDEAESRGHSKGW 82
AP +++ P+PP PP G GP + P G+ P G G A G +
Sbjct: 56 APGSPLYRVSAPPPAPPPPPPPG-GPSRSERPRAGLRPGAFVSPGPLGRRASCSGRAGSA 114
Query: 83 GRNYASIIRRDCMWSGFSARERLERAVSDRLAPGAPRGNPPKASAAPDCTPSLEAGNPAP 142
GR S G AR ++ A+ +PG +PP+AS P P EA +
Sbjct: 115 GRLRCSAAALSAAQRGGPARAQVPPALR-TFSPGP--ASPPRAS--PGGRPGSEARGRSG 169
Query: 143 A-----APCPLGEPKTQACSGSESPSDSGKDLPEPSKRGPP 178
A P G P SG S D L + RGPP
Sbjct: 170 AECARRVPLHHGPP---GASGVGSERDRKFQLHQTPARGPP 207
>gi|154146199 sal-like 3 [Homo sapiens]
Length = 1300
Score = 39.7 bits (91), Expect = 0.002
Identities = 41/137 (29%), Positives = 52/137 (37%), Gaps = 19/137 (13%)
Query: 27 EDIWKKFELVPSPPTSPPWGLGPGAGDPAPGIGPPEPWPGGCTGDEAESRGHSKGWGRNY 86
E I + L+ PP P L P A APG P + PG + + G
Sbjct: 224 EQIRSQVALMQRPPPRP--SLSPAAAPSAPGPAPSQ-LPGLAALPLSAGAPAAAIAGSGP 280
Query: 87 ASIIRRDCMWSGFSARERLERAVSDRLAPGAPRGNPPKASAAPDCTPSLEAGNPAPAAPC 146
A+ + F + L R S PG P P A AAP P APAAP
Sbjct: 281 AAP-------AAFEGAQPLSRPESGASTPGGPA--EPSAPAAPSAAP-------APAAPA 324
Query: 147 PLGEPKTQACSGSESPS 163
P P++ A S +S S
Sbjct: 325 PAPAPQSAASSQPQSAS 341
>gi|21704281 junctophilin 2 isoform 1 [Homo sapiens]
Length = 696
Score = 39.7 bits (91), Expect = 0.002
Identities = 42/144 (29%), Positives = 54/144 (37%), Gaps = 19/144 (13%)
Query: 37 PSPPTSPPWGLGPGAGDPAPGIGPPEPWPGGCTGDEAESRGHSKGWGRNYASIIRRDCMW 96
PSP +PP P G G+ P W G +G+ + S S+G GR
Sbjct: 485 PSPAGTPPQPKRPRPGVSKDGLLSPGAWNGEPSGEGSRSVTPSEGAGRR----------- 533
Query: 97 SGFSARERLERAVSDRL-APGAPRGNPPKASAAPDCTPSLEAGNPAPAAPCPLGEPKTQA 155
AR ER + L AP AP P A + ++ P P P +
Sbjct: 534 --SPARPATERMAIEALQAPPAPSREPEVALYQGYHSYAVRT---TPPEPPPFEDQPEPE 588
Query: 156 CSGSESPSDSGKDLP--EPSKRGP 177
SGSES S P P+ RGP
Sbjct: 589 VSGSESAPSSPATAPLQAPTLRGP 612
>gi|33286446 opioid growth factor receptor [Homo sapiens]
Length = 677
Score = 39.3 bits (90), Expect = 0.002
Identities = 47/160 (29%), Positives = 57/160 (35%), Gaps = 27/160 (16%)
Query: 48 GPGAGDPAPGIGPPEPWPGGCTGDE-AESRGHSKGWGRNYASIIRRDCMWSGFSARERLE 106
GP G P P P P G GDE AES + G R +G E
Sbjct: 509 GPKEGTPGSPSETPGPSPAGPAGDEPAESPSETPG---------PRPAGPAGDEPAESPS 559
Query: 107 RAVSDRLAPGAPRGNPPKASAAPDCTPSLEAGNPA---PA-APCPLGEPKTQACSGSESP 162
R P P G+ P S P TP P PA +P P+ +G E P
Sbjct: 560 ETPGPR--PAGPAGDEPAES--PSETPGPSPAGPTRDEPAESPSETPGPRPAGPAGDE-P 614
Query: 163 SDSGKDLPEPSKRGPPHGWPKLCPCLRSGIGSSQALGPSP 202
++S + P P GP P P S+ GPSP
Sbjct: 615 AESPSETPGPRPAGPAGDEPAESP--------SETPGPSP 646
Score = 38.9 bits (89), Expect = 0.003
Identities = 45/146 (30%), Positives = 56/146 (38%), Gaps = 23/146 (15%)
Query: 34 ELVPSPPTSP-PWGLGPGAGDPAPGIGP-PEPWPGGCTGDE-AESRGHSKGWGRNYASII 90
E SP +P P GP +PA P P P G GDE AES + G
Sbjct: 533 EPAESPSETPGPRPAGPAGDEPAESPSETPGPRPAGPAGDEPAESPSETPG--------- 583
Query: 91 RRDCMWSGFSARERLERAVSDRLAPGAPRGNPPKASAAPDCTPSLEAGNPAPAAPCPLGE 150
+ R E A S PG P A P +PS E P PA P G+
Sbjct: 584 ------PSPAGPTRDEPAESPSETPGPRPAGP--AGDEPAESPS-ETPGPRPAGPA--GD 632
Query: 151 PKTQACSGSESPSDSGKDLPEPSKRG 176
++ S + PS +G EP+K G
Sbjct: 633 EPAESPSETPGPSPAGPTRDEPAKAG 658
Score = 37.0 bits (84), Expect = 0.012
Identities = 43/149 (28%), Positives = 57/149 (38%), Gaps = 15/149 (10%)
Query: 38 SPPTSP-PWGLGPGAGDPAPGIGP-PEPWPGGCTGDE-AESRGHSKGWGRNYASIIRRDC 94
SP +P P GP +PA P P P G GDE AES + G R
Sbjct: 517 SPSETPGPSPAGPAGDEPAESPSETPGPRPAGPAGDEPAESPSETPG---------PRPA 567
Query: 95 MWSGFSARERLERAVSDRLAPGAPRGNPPKA-SAAPDCTPSLEAGNPAPAAPCPLGEPKT 153
+G E A G R P ++ S P P+ AG+ +P P+
Sbjct: 568 GPAGDEPAESPSETPGPSPA-GPTRDEPAESPSETPGPRPAGPAGDEPAESPSETPGPRP 626
Query: 154 QACSGSESPSDSGKDLPEPSKRGPPHGWP 182
+G E P++S + P PS GP P
Sbjct: 627 AGPAGDE-PAESPSETPGPSPAGPTRDEP 654
>gi|149158696 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 39.3 bits (90), Expect = 0.002
Identities = 50/195 (25%), Positives = 67/195 (34%), Gaps = 31/195 (15%)
Query: 36 VPSPPTSP--PWGLGPGAGDPAPGIG------------PPEPWPGGCTGDEAESRGHSKG 81
VPS PT P P G G G PG PP+ P G G
Sbjct: 465 VPSAPTGPLGPPGHGQTLGQQVPGFPTAPTRVVIARPTPPQARPSHPGGPPVSGTLQGAG 524
Query: 82 WGRNYASIIRRDCMWSGFSARERLERAVSDRLAPG-APRGNPPKASAAPDCTPSLEAGNP 140
G N AS+ + M SG + ++ + + PG AP P ASA+ T + P
Sbjct: 525 LGTN-ASLAQ---MVSGLVGQLLMQPVLVAQGTPGMAPPPAPATASASAGTTNTATTAGP 580
Query: 141 A---PAAPCPLGEPKTQACS---------GSESPSDSGKDLPEPSKRGPPHGWPKLCPCL 188
A PA P P +P G P G + P+ G P +
Sbjct: 581 APGGPAQPPPTPQPSMADLQFSQLLGNLLGPAGPGAGGSGVASPTITVAMPGVPAFLQGM 640
Query: 189 RSGIGSSQALGPSPP 203
+ ++Q P PP
Sbjct: 641 TDFLQATQTAPPPPP 655
>gi|18375632 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 39.3 bits (90), Expect = 0.002
Identities = 50/195 (25%), Positives = 67/195 (34%), Gaps = 31/195 (15%)
Query: 36 VPSPPTSP--PWGLGPGAGDPAPGIG------------PPEPWPGGCTGDEAESRGHSKG 81
VPS PT P P G G G PG PP+ P G G
Sbjct: 465 VPSAPTGPLGPPGHGQTLGQQVPGFPTAPTRVVIARPTPPQARPSHPGGPPVSGTLQGAG 524
Query: 82 WGRNYASIIRRDCMWSGFSARERLERAVSDRLAPG-APRGNPPKASAAPDCTPSLEAGNP 140
G N AS+ + M SG + ++ + + PG AP P ASA+ T + P
Sbjct: 525 LGTN-ASLAQ---MVSGLVGQLLMQPVLVAQGTPGMAPPPAPATASASAGTTNTATTAGP 580
Query: 141 A---PAAPCPLGEPKTQACS---------GSESPSDSGKDLPEPSKRGPPHGWPKLCPCL 188
A PA P P +P G P G + P+ G P +
Sbjct: 581 APGGPAQPPPTPQPSMADLQFSQLLGNLLGPAGPGAGGSGVASPTITVAMPGVPAFLQGM 640
Query: 189 RSGIGSSQALGPSPP 203
+ ++Q P PP
Sbjct: 641 TDFLQATQTAPPPPP 655
>gi|18375630 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 39.3 bits (90), Expect = 0.002
Identities = 50/195 (25%), Positives = 67/195 (34%), Gaps = 31/195 (15%)
Query: 36 VPSPPTSP--PWGLGPGAGDPAPGIG------------PPEPWPGGCTGDEAESRGHSKG 81
VPS PT P P G G G PG PP+ P G G
Sbjct: 465 VPSAPTGPLGPPGHGQTLGQQVPGFPTAPTRVVIARPTPPQARPSHPGGPPVSGTLQGAG 524
Query: 82 WGRNYASIIRRDCMWSGFSARERLERAVSDRLAPG-APRGNPPKASAAPDCTPSLEAGNP 140
G N AS+ + M SG + ++ + + PG AP P ASA+ T + P
Sbjct: 525 LGTN-ASLAQ---MVSGLVGQLLMQPVLVAQGTPGMAPPPAPATASASAGTTNTATTAGP 580
Query: 141 A---PAAPCPLGEPKTQACS---------GSESPSDSGKDLPEPSKRGPPHGWPKLCPCL 188
A PA P P +P G P G + P+ G P +
Sbjct: 581 APGGPAQPPPTPQPSMADLQFSQLLGNLLGPAGPGAGGSGVASPTITVAMPGVPAFLQGM 640
Query: 189 RSGIGSSQALGPSPP 203
+ ++Q P PP
Sbjct: 641 TDFLQATQTAPPPPP 655
>gi|149158692 HLA-B associated transcript-3 isoform a [Homo sapiens]
Length = 1132
Score = 39.3 bits (90), Expect = 0.002
Identities = 50/195 (25%), Positives = 67/195 (34%), Gaps = 31/195 (15%)
Query: 36 VPSPPTSP--PWGLGPGAGDPAPGIG------------PPEPWPGGCTGDEAESRGHSKG 81
VPS PT P P G G G PG PP+ P G G
Sbjct: 471 VPSAPTGPLGPPGHGQTLGQQVPGFPTAPTRVVIARPTPPQARPSHPGGPPVSGTLQGAG 530
Query: 82 WGRNYASIIRRDCMWSGFSARERLERAVSDRLAPG-APRGNPPKASAAPDCTPSLEAGNP 140
G N AS+ + M SG + ++ + + PG AP P ASA+ T + P
Sbjct: 531 LGTN-ASLAQ---MVSGLVGQLLMQPVLVAQGTPGMAPPPAPATASASAGTTNTATTAGP 586
Query: 141 A---PAAPCPLGEPKTQACS---------GSESPSDSGKDLPEPSKRGPPHGWPKLCPCL 188
A PA P P +P G P G + P+ G P +
Sbjct: 587 APGGPAQPPPTPQPSMADLQFSQLLGNLLGPAGPGAGGSGVASPTITVAMPGVPAFLQGM 646
Query: 189 RSGIGSSQALGPSPP 203
+ ++Q P PP
Sbjct: 647 TDFLQATQTAPPPPP 661
>gi|122692281 hypothetical protein LOC645369 [Homo sapiens]
Length = 621
Score = 38.9 bits (89), Expect = 0.003
Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 102 RERLERAVSDRLAPGAPRGNPPKASAAPDCTPSLEAGNPAPAAPCPL-GEPKTQACSG-- 158
R R + D AP +P P SA PD +P +A +P+P P L G P T+ SG
Sbjct: 468 RRRSTSGLPDYRAPPSPEPPPSPGSADPDSSPLAKAASPSP--PLRLEGSPPTRRDSGSS 525
Query: 159 -SESPSDSGK 167
S+ PS S K
Sbjct: 526 QSDDPSSSNK 535
>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
sapiens]
Length = 2715
Score = 38.5 bits (88), Expect = 0.004
Identities = 40/171 (23%), Positives = 56/171 (32%), Gaps = 25/171 (14%)
Query: 39 PPTSPPWGLGPGAGDPAP-GIGPPEPWPGGCTGDEAESRGHSKGWGRNYASIIRRDCMWS 97
PP +P A P G PP P P TG E + IR+ M
Sbjct: 472 PPLTPSQRAEREAARAGPEGTSPPTPTPSTATGGPPEDSPTVAPKSTTFLKNIRQFIMPV 531
Query: 98 GFSARERLERAVSDRLAPGAPRGNPPKASAAPDCTPSLEAGNPAPAAPCPLGEPKTQACS 157
+ R+ + + P+ PPK +P P + P P P P+ P
Sbjct: 532 VSARSSRVIKTPRRFMDEDPPK--PPKVEVSPVLRPPITTSPPVPQEPAPVPSP------ 583
Query: 158 GSESPSDSGKDLPEPSK-----RGPPHGWPKLCPCLRSGIGSSQALGPSPP 203
+P+ +P P K R P W L ++ L P PP
Sbjct: 584 -PRAPTPPSTPVPLPEKRRSILREPTFRWTSL----------TRELPPPPP 623
Score = 34.7 bits (78), Expect = 0.059
Identities = 26/88 (29%), Positives = 34/88 (38%), Gaps = 7/88 (7%)
Query: 103 ERLERAVSDRLAPGAPRGN-----PPKASAAPDCTPSLEAGNPAPAAPCPLGEPKTQACS 157
E+ ERAV++ + P A + PP AP P L P+ + P PL P S
Sbjct: 380 EKEERAVAEEMMPAAEKEEAKLPPPPLTPPAPSPPPPLPP--PSTSPPPPLCPPPPPPVS 437
Query: 158 GSESPSDSGKDLPEPSKRGPPHGWPKLC 185
PS E + PP P C
Sbjct: 438 PPPLPSPPPPPAQEEQEESPPPVVPATC 465
Score = 28.9 bits (63), Expect = 3.2
Identities = 31/110 (28%), Positives = 40/110 (36%), Gaps = 15/110 (13%)
Query: 36 VPSPPTSPPWGLGPGAGDPAPGIGPPEPWPGGCTGDEAESRGHSKGWGRNYASIIRRDCM 95
+P P TSPP L P P P + PP P P E + S ++ C
Sbjct: 417 LPPPSTSPPPPLCP---PPPPPVSPP-PLPSPPPPPAQEEQEESP------PPVVPATCS 466
Query: 96 WSGFSARERLERAVSDRLAPGAPRGNPPKASAAPDCTPSLEAGNPAPAAP 145
R R S R A R P+ ++ P TPS G P +P
Sbjct: 467 ----RKRGRPPLTPSQRAEREAARAG-PEGTSPPTPTPSTATGGPPEDSP 511
Score = 27.7 bits (60), Expect = 7.2
Identities = 37/176 (21%), Positives = 61/176 (34%), Gaps = 23/176 (13%)
Query: 39 PPTSPPWGLGPGAGD---PAPGIGPPEPWPGGCTGDEAESRGHSKGWGRNYASIIRRDCM 95
PPTS L P +G+ P P PP P G ++ E ++A
Sbjct: 1943 PPTSVVTALTPTSGELAPPGPAPSPPPPEDLGPDFEDMEVVSGLSAADLDFA-------- 1994
Query: 96 WSGFSARERLERAVSDRLAPGAPRGNPPKASAAPDCT-------PSLEAGNPAPAAPCPL 148
+ E + + A G+ G P +S P P A
Sbjct: 1995 -ASLLGTEPFQEEIVAAGAMGSSHGGPGDSSEEESSPTSRYIHFPVTVVSAPGLAPSATP 2053
Query: 149 GEPKTQACSGSESPSDS-GKDLPEPSKRGPPHGWPKLCPCLRSGIGSSQALGPSPP 203
G P+ + G + +DS + + +P +G P P + +R+G+ + PP
Sbjct: 2054 GAPRIEQLDGVDDGTDSEAEAVQQPRGQGTPPSGPGV---VRAGVLGAAGDRARPP 2106
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.137 0.467
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,132,320
Number of Sequences: 37866
Number of extensions: 959978
Number of successful extensions: 7615
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 722
Number of HSP's that attempted gapping in prelim test: 5458
Number of HSP's gapped (non-prelim): 2720
length of query: 206
length of database: 18,247,518
effective HSP length: 97
effective length of query: 109
effective length of database: 14,574,516
effective search space: 1588622244
effective search space used: 1588622244
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.