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Search of human proteins with 19923987
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|19923987 nucleoredoxin-like 1 [Homo sapiens]
(212 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|19923987 nucleoredoxin-like 1 [Homo sapiens] 428 e-120
gi|239735508 nucleoredoxin-like 2 isoform 1 [Homo sapiens] 101 5e-22
gi|33149331 nucleoredoxin [Homo sapiens] 68 5e-12
gi|239735607 nucleoredoxin-like 2 isoform 2 [Homo sapiens] 57 9e-09
gi|5031757 T-cell leukemia homeobox 1 [Homo sapiens] 37 0.012
gi|13129006 nucleolar protein GU2 [Homo sapiens] 36 0.021
gi|89145413 short stature homeobox 2 isoform a [Homo sapiens] 32 0.30
gi|109452587 family with sequence similarity 98, member B isofor... 32 0.30
gi|169171347 PREDICTED: hypothetical protein [Homo sapiens] 32 0.40
gi|169172209 PREDICTED: hypothetical protein [Homo sapiens] 32 0.40
gi|169170953 PREDICTED: hypothetical protein [Homo sapiens] 32 0.40
gi|239508753 PREDICTED: hypothetical protein [Homo sapiens] 32 0.40
gi|157676331 hyaluronan binding protein 4 [Homo sapiens] 31 0.68
gi|197209826 chromosome 2 open reading frame 21 isoform 1 [Homo ... 31 0.89
gi|239743123 PREDICTED: hypothetical protein [Homo sapiens] 31 0.89
gi|13994190 frizzled 8 [Homo sapiens] 31 0.89
gi|210147522 zinc finger, SWIM-type containing 6 [Homo sapiens] 30 1.5
gi|110347449 POU domain, class 4, transcription factor 1 [Homo s... 30 1.5
gi|18426973 DR1-associated protein 1 [Homo sapiens] 30 2.0
gi|169171388 PREDICTED: hypothetical protein [Homo sapiens] 30 2.0
gi|239749096 PREDICTED: hypothetical protein [Homo sapiens] 30 2.0
gi|11034843 ras homolog gene family, member U [Homo sapiens] 30 2.0
gi|5453936 POU class 3 homeobox 3 [Homo sapiens] 30 2.0
gi|28274705 family with sequence similarity 9, member A [Homo sa... 30 2.0
gi|223671856 coiled-coil domain containing 85C [Homo sapiens] 29 2.6
gi|4885597 sine oculis homeobox homolog 3 [Homo sapiens] 29 2.6
gi|29568103 U1 small nuclear ribonucleoprotein 70 kDa [Homo sapi... 29 2.6
gi|122937319 even-skipped homeobox 2 [Homo sapiens] 29 2.6
gi|13676857 heat shock 70kDa protein 2 [Homo sapiens] 29 2.6
gi|140161500 ankyrin repeat and sterile alpha motif domain conta... 29 2.6
>gi|19923987 nucleoredoxin-like 1 [Homo sapiens]
Length = 212
Score = 428 bits (1100), Expect = e-120
Identities = 212/212 (100%), Positives = 212/212 (100%)
Query: 1 MASLFSGRILIRNNSDQDELDTEAEVSRRLENRLVLLFFGAGACPQCQAFVPILKDFFVR 60
MASLFSGRILIRNNSDQDELDTEAEVSRRLENRLVLLFFGAGACPQCQAFVPILKDFFVR
Sbjct: 1 MASLFSGRILIRNNSDQDELDTEAEVSRRLENRLVLLFFGAGACPQCQAFVPILKDFFVR 60
Query: 61 LTDEFYVLRAAQLALVYVSQDSTEEQQDLFLKDMPKKWLFLPFEDDLRRDLGRQFSVERL 120
LTDEFYVLRAAQLALVYVSQDSTEEQQDLFLKDMPKKWLFLPFEDDLRRDLGRQFSVERL
Sbjct: 61 LTDEFYVLRAAQLALVYVSQDSTEEQQDLFLKDMPKKWLFLPFEDDLRRDLGRQFSVERL 120
Query: 121 PAVVVLKPDGDVLTRDGADEIQRLGTACFANWQEAAEVLDRNFQLPEDLEDQEPRSLTEC 180
PAVVVLKPDGDVLTRDGADEIQRLGTACFANWQEAAEVLDRNFQLPEDLEDQEPRSLTEC
Sbjct: 121 PAVVVLKPDGDVLTRDGADEIQRLGTACFANWQEAAEVLDRNFQLPEDLEDQEPRSLTEC 180
Query: 181 LRRHKYRVEKAARGGRDPGGGGGEEGGAGGLF 212
LRRHKYRVEKAARGGRDPGGGGGEEGGAGGLF
Sbjct: 181 LRRHKYRVEKAARGGRDPGGGGGEEGGAGGLF 212
>gi|239735508 nucleoredoxin-like 2 isoform 1 [Homo sapiens]
Length = 156
Score = 101 bits (251), Expect = 5e-22
Identities = 49/141 (34%), Positives = 84/141 (59%), Gaps = 3/141 (2%)
Query: 25 EVSRRLENRLVLLFFGAGACPQCQAFVPILKDFFVRLTDEFYVLRAAQLALVYVSQDSTE 84
E L+N++V L+F A C + F P+L DF+ L E R A +V+VS D +
Sbjct: 19 EAEAALQNKVVALYFAAARCAPSRDFTPLLCDFYTALVAE--ARRPAPFEVVFVSADGSS 76
Query: 85 EQQDLFLKDMPKKWLFLPFEDDLRRDLGRQFSVERLPAVVVLKPDGDVLTRDGADEIQRL 144
++ F++++ WL LPF D R +L ++++V +P +V++K +G+V+T G +I+
Sbjct: 77 QEMLDFMRELHGAWLALPFHDPYRHELRKRYNVTAIPKLVIVKQNGEVITNKGRKQIRER 136
Query: 145 GTACFANWQEAAEVLDRNFQL 165
G ACF +W EAA++ +NF +
Sbjct: 137 GLACFQDWVEAADIF-QNFSV 156
>gi|33149331 nucleoredoxin [Homo sapiens]
Length = 435
Score = 68.2 bits (165), Expect = 5e-12
Identities = 39/133 (29%), Positives = 69/133 (51%), Gaps = 15/133 (11%)
Query: 10 LIRNNSDQDELDTEAEVSRRLENRLVLLFFGAGACPQCQAFVPILKDFFVRLTDEFYVLR 69
L+RNN E S LE V ++F A CP C++ +L + + ++ +
Sbjct: 178 LLRNNGQSLE-------SSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKEA----- 225
Query: 70 AAQLALVYVSQDSTEEQQDLFLKDMPKKWLFLPFEDDLRRD-LGRQFSVERLPAVVVLKP 128
+++VS D +EE + +MP WL +P+ D+ RR L R + ++ +P +++L P
Sbjct: 226 GQNFEIIFVSADRSEESFKQYFSEMP--WLAVPYTDEARRSRLNRLYGIQGIPTLIMLDP 283
Query: 129 DGDVLTRDGADEI 141
G+V+TR G E+
Sbjct: 284 QGEVITRQGRVEV 296
Score = 40.4 bits (93), Expect = 0.001
Identities = 36/136 (26%), Positives = 64/136 (47%), Gaps = 20/136 (14%)
Query: 18 DELDTEAEVSRRLENRLVLLFFGAGACPQCQAFVPILKDFFVRLTDEFYV-------LRA 70
+E+D + +R + L+ L+FG C L F+ RL + A
Sbjct: 19 EEVDVHSLGARGIS--LLGLYFGCSLSAPCAQLSASLAAFYGRLRGDAAAGPGPGAGAGA 76
Query: 71 A-------QLALVYVSQDSTEEQQDLFLKDMPKKWLFLPFEDDLRR-DLGRQFSVERLPA 122
A +L +V+VS D + Q F++DMP WL LP+++ R+ L ++ + +P+
Sbjct: 77 AAEPEPRRRLEIVFVSSDQDQRQWQDFVRDMP--WLALPYKEKHRKLKLWNKYRISNIPS 134
Query: 123 VVVL-KPDGDVLTRDG 137
++ L G V+ R+G
Sbjct: 135 LIFLDATTGKVVCRNG 150
>gi|239735607 nucleoredoxin-like 2 isoform 2 [Homo sapiens]
Length = 135
Score = 57.4 bits (137), Expect = 9e-09
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 25 EVSRRLENRLVLLFFGAGACPQCQAFVPILKDFFVRLTDEFYVLRAAQLALVYVSQDSTE 84
E L+N++V L+F A C + F P+L DF+ L E R A +V+VS D +
Sbjct: 19 EAEAALQNKVVALYFAAARCAPSRDFTPLLCDFYTALVAE--ARRPAPFEVVFVSADGSS 76
Query: 85 EQQDLFLKDMPKKWLFLPFEDDLRR 109
++ F++++ WL LPF D R+
Sbjct: 77 QEMLDFMRELHGAWLALPFHDPYRQ 101
>gi|5031757 T-cell leukemia homeobox 1 [Homo sapiens]
Length = 330
Score = 37.0 bits (84), Expect = 0.012
Identities = 16/26 (61%), Positives = 16/26 (61%)
Query: 186 YRVEKAARGGRDPGGGGGEEGGAGGL 211
Y V A GG PGGGGG GGAG L
Sbjct: 101 YNVNMALAGGPGPGGGGGSSGGAGAL 126
>gi|13129006 nucleolar protein GU2 [Homo sapiens]
Length = 737
Score = 36.2 bits (82), Expect = 0.021
Identities = 40/164 (24%), Positives = 71/164 (43%), Gaps = 17/164 (10%)
Query: 56 DFF----VRLTDEFYVLRAAQLALVYVSQDSTEEQQDLFLKDMPKKWLFLPFEDDLR--- 108
DFF RL +E + A AL ++S S+ E + L D + L ++++
Sbjct: 543 DFFRPSAQRLIEEKGAVDALAAALAHISGASSFEPRSLITSDKGFVTMTLESLEEIQDVS 602
Query: 109 ---RDLGRQFS---VERLPAVVVLKPDGDVLTRDGADEIQRLGTACFANWQEAAEVLDRN 162
++L R+ S V ++ + +LK + V E +RL A W ++ +L
Sbjct: 603 CAWKELNRKLSSNAVSQITRMCLLKGNMGVCFDVPTTESERLQ----AEWHDSDWILSVP 658
Query: 163 FQLPEDLEDQEPRSLTECLRRHKYRVEKAARGGRDPGGGGGEEG 206
+LPE E + + + +R + ++ R GR G GG G
Sbjct: 659 AKLPEIEEYYDGNTSSNSRQRSGWSSGRSGRSGRSGGRSGGRSG 702
>gi|89145413 short stature homeobox 2 isoform a [Homo sapiens]
Length = 331
Score = 32.3 bits (72), Expect = 0.30
Identities = 17/39 (43%), Positives = 19/39 (48%)
Query: 172 QEPRSLTECLRRHKYRVEKAARGGRDPGGGGGEEGGAGG 210
+EP TE R + A GG GGGGG GG GG
Sbjct: 38 KEPTGCTEAGRDDRSSPAVRAAGGGGGGGGGGGGGGGGG 76
>gi|109452587 family with sequence similarity 98, member B isoform 1
[Homo sapiens]
Length = 433
Score = 32.3 bits (72), Expect = 0.30
Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
Query: 146 TACFANWQEAAEVLDRNFQLPEDLEDQEPRSLTECLRRHKYRVEKAARGGRDPGGGGGEE 205
TAC N V DR + P ++E P E K + RGG GGGGG
Sbjct: 293 TACAINKVLMGRVPDRGGR-PNEIEPPPP----EMPPWQKRQEGGGGRGGWGGGGGGGGR 347
Query: 206 GGAGG 210
GG GG
Sbjct: 348 GGGGG 352
Score = 28.9 bits (63), Expect = 3.4
Identities = 12/17 (70%), Positives = 12/17 (70%)
Query: 194 GGRDPGGGGGEEGGAGG 210
GGR GGGGG GG GG
Sbjct: 345 GGRGGGGGGGGRGGWGG 361
Score = 27.7 bits (60), Expect = 7.5
Identities = 12/18 (66%), Positives = 12/18 (66%)
Query: 193 RGGRDPGGGGGEEGGAGG 210
RG DP GGGG GG GG
Sbjct: 408 RGYGDPYGGGGGGGGGGG 425
>gi|169171347 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1128
Score = 32.0 bits (71), Expect = 0.40
Identities = 16/29 (55%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 181 LRRHKYRVEKAARGGRDPGGGGGEEGGAG 209
LR+H RVE+A R GGGGG GG G
Sbjct: 498 LRQHAERVERAQRAAEGRGGGGG--GGCG 524
>gi|169172209 PREDICTED: hypothetical protein [Homo sapiens]
Length = 801
Score = 32.0 bits (71), Expect = 0.40
Identities = 16/29 (55%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 181 LRRHKYRVEKAARGGRDPGGGGGEEGGAG 209
LR+H RVE+A R GGGGG GG G
Sbjct: 171 LRQHAERVERAQRAAEGRGGGGG--GGCG 197
>gi|169170953 PREDICTED: hypothetical protein [Homo sapiens]
Length = 801
Score = 32.0 bits (71), Expect = 0.40
Identities = 16/29 (55%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 181 LRRHKYRVEKAARGGRDPGGGGGEEGGAG 209
LR+H RVE+A R GGGGG GG G
Sbjct: 171 LRQHAERVERAQRAAEGRGGGGG--GGCG 197
>gi|239508753 PREDICTED: hypothetical protein [Homo sapiens]
Length = 801
Score = 32.0 bits (71), Expect = 0.40
Identities = 16/29 (55%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 181 LRRHKYRVEKAARGGRDPGGGGGEEGGAG 209
LR+H RVE+A R GGGGG GG G
Sbjct: 171 LRQHAERVERAQRAAEGRGGGGG--GGCG 197
>gi|157676331 hyaluronan binding protein 4 [Homo sapiens]
Length = 413
Score = 31.2 bits (69), Expect = 0.68
Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 11/64 (17%)
Query: 158 VLDRNFQLPED-------LEDQEPRSLTECLRRHKYRVEKAA----RGGRDPGGGGGEEG 206
V +R QL +D L + E R + R+ + AA RGGR P G G
Sbjct: 24 VANRFHQLLDDESDPFDILREAERRRQQQLQRKRRDEAAAAAGAGPRGGRSPAGASGHRA 83
Query: 207 GAGG 210
GAGG
Sbjct: 84 GAGG 87
>gi|197209826 chromosome 2 open reading frame 21 isoform 1 [Homo
sapiens]
Length = 3258
Score = 30.8 bits (68), Expect = 0.89
Identities = 12/17 (70%), Positives = 13/17 (76%)
Query: 194 GGRDPGGGGGEEGGAGG 210
GG D GGGGG+ GG GG
Sbjct: 746 GGGDGGGGGGDGGGGGG 762
Score = 28.5 bits (62), Expect = 4.4
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 194 GGRDPGGGGGEEGGAGG 210
GG GGGGG +GG GG
Sbjct: 745 GGGGDGGGGGGDGGGGG 761
>gi|239743123 PREDICTED: hypothetical protein [Homo sapiens]
Length = 123
Score = 30.8 bits (68), Expect = 0.89
Identities = 17/38 (44%), Positives = 18/38 (47%), Gaps = 8/38 (21%)
Query: 173 EPRSLTECLRRHKYRVEKAARGGRDPGGGGGEEGGAGG 210
+P E L HK GG GG GG EGGAGG
Sbjct: 7 QPVLAAETLNNHK--------GGGGGGGAGGAEGGAGG 36
>gi|13994190 frizzled 8 [Homo sapiens]
Length = 694
Score = 30.8 bits (68), Expect = 0.89
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 194 GGRDPGGGGGEEGGAGGLF 212
GG PGGGGG GG G L+
Sbjct: 648 GGGGPGGGGGPGGGGGSLY 666
Score = 29.3 bits (64), Expect = 2.6
Identities = 13/20 (65%), Positives = 13/20 (65%)
Query: 191 AARGGRDPGGGGGEEGGAGG 210
AA GG PGGGGG G GG
Sbjct: 637 AAGGGGGPGGGGGGGPGGGG 656
>gi|210147522 zinc finger, SWIM-type containing 6 [Homo sapiens]
Length = 1215
Score = 30.0 bits (66), Expect = 1.5
Identities = 17/39 (43%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 174 PRSLTECLRRHKYRVEKAARGGR--DPGGGGGEEGGAGG 210
PRS E + A GG D GGGGG GG GG
Sbjct: 115 PRSEREICMYSSFNTGGGAAGGPGDDSGGGGGAGGGGGG 153
>gi|110347449 POU domain, class 4, transcription factor 1 [Homo
sapiens]
Length = 419
Score = 30.0 bits (66), Expect = 1.5
Identities = 12/17 (70%), Positives = 12/17 (70%)
Query: 194 GGRDPGGGGGEEGGAGG 210
GG PGGGGG GG GG
Sbjct: 149 GGGGPGGGGGPGGGPGG 165
>gi|18426973 DR1-associated protein 1 [Homo sapiens]
Length = 205
Score = 29.6 bits (65), Expect = 2.0
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 189 EKAARGGRDPGGGGGEEGGAG 209
+K AR GR PG GG + GG G
Sbjct: 105 DKGARRGRKPGSGGRKNGGMG 125
>gi|169171388 PREDICTED: hypothetical protein [Homo sapiens]
Length = 154
Score = 29.6 bits (65), Expect = 2.0
Identities = 12/18 (66%), Positives = 13/18 (72%)
Query: 193 RGGRDPGGGGGEEGGAGG 210
+GG GG GG EGGAGG
Sbjct: 50 KGGGGGGGAGGAEGGAGG 67
>gi|239749096 PREDICTED: hypothetical protein [Homo sapiens]
Length = 154
Score = 29.6 bits (65), Expect = 2.0
Identities = 12/18 (66%), Positives = 13/18 (72%)
Query: 193 RGGRDPGGGGGEEGGAGG 210
+GG GG GG EGGAGG
Sbjct: 50 KGGGGGGGAGGAEGGAGG 67
>gi|11034843 ras homolog gene family, member U [Homo sapiens]
Length = 258
Score = 29.6 bits (65), Expect = 2.0
Identities = 15/26 (57%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 187 RVEKAARGGRDPG--GGGGEEGGAGG 210
R E+ RGGR PG GG G GGA G
Sbjct: 22 RRERGGRGGRGPGEPGGRGRAGGAEG 47
>gi|5453936 POU class 3 homeobox 3 [Homo sapiens]
Length = 500
Score = 29.6 bits (65), Expect = 2.0
Identities = 13/22 (59%), Positives = 14/22 (63%)
Query: 189 EKAARGGRDPGGGGGEEGGAGG 210
+ A GG GGGGG GGAGG
Sbjct: 25 DAAGAGGGGGGGGGGGGGGAGG 46
Score = 27.7 bits (60), Expect = 7.5
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 194 GGRDPGGGGGEEGGAGGL 211
GG GGGGG GG GG+
Sbjct: 34 GGGGGGGGGGAGGGGGGM 51
>gi|28274705 family with sequence similarity 9, member A [Homo
sapiens]
Length = 332
Score = 29.6 bits (65), Expect = 2.0
Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 7/75 (9%)
Query: 136 DGADEIQRLGTACFANWQEAAEVLDRNFQLPEDLEDQEPRSLTECLRRHKYRVEKAARGG 195
D A+E + A A A + ED E++E E + E+ G
Sbjct: 189 DEAEEAEAAAAAAEAAAAAEAAAAAAEVIVVEDEEEEEKEEEEE-------KEEEEEEGE 241
Query: 196 RDPGGGGGEEGGAGG 210
+ GG GEEGG GG
Sbjct: 242 EEGGGEEGEEGGGGG 256
>gi|223671856 coiled-coil domain containing 85C [Homo sapiens]
Length = 419
Score = 29.3 bits (64), Expect = 2.6
Identities = 30/80 (37%), Positives = 35/80 (43%), Gaps = 14/80 (17%)
Query: 138 ADEIQRLGT-ACFANWQEAAEVLDRNFQLPEDLEDQEPRSLTECLRRHKY-------RVE 189
A E QR G A A W E A R+ Q +LE ++ L E L + R
Sbjct: 102 AREWQRFGRHAAGAVWHEVA----RSQQKLRELEARQEALLRENLELKELVLLLDEERAA 157
Query: 190 KAARGGRDPGGGGGEEGGAG 209
AA G GGGGG GGAG
Sbjct: 158 LAATGAASGGGGGG--GGAG 175
>gi|4885597 sine oculis homeobox homolog 3 [Homo sapiens]
Length = 332
Score = 29.3 bits (64), Expect = 2.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 184 HKYRVEKAARGGRDPGGGGGEEGGAGG 210
H+ + ++ GG GGGGG GG+GG
Sbjct: 24 HRSILLASSGGGNGAGGGGGAGGGSGG 50
>gi|29568103 U1 small nuclear ribonucleoprotein 70 kDa [Homo
sapiens]
Length = 437
Score = 29.3 bits (64), Expect = 2.6
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 182 RRHKYRVEKAARGGRDP--GGGGGEEGGAGGL 211
R HK R E+ + GRD GGGGG++ G GL
Sbjct: 376 REHK-RGERGSERGRDEARGGGGGQDNGLEGL 406
>gi|122937319 even-skipped homeobox 2 [Homo sapiens]
Length = 476
Score = 29.3 bits (64), Expect = 2.6
Identities = 13/20 (65%), Positives = 13/20 (65%)
Query: 191 AARGGRDPGGGGGEEGGAGG 210
AA G R GGGGG GG GG
Sbjct: 407 AALGSRGGGGGGGGGGGGGG 426
>gi|13676857 heat shock 70kDa protein 2 [Homo sapiens]
Length = 639
Score = 29.3 bits (64), Expect = 2.6
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 153 QEAAEVLDRNFQLPEDLEDQEPRSLTECLRRHKYRVEKAARGGRDPGGGGGEEGGAGG 210
QE LDRN +D + + + L + K +GG G GGG G +GG
Sbjct: 578 QEVINWLDRNQMAEKDEYEHKQKELERVCNPI---ISKLYQGGPGGGSGGGGSGASGG 632
>gi|140161500 ankyrin repeat and sterile alpha motif domain
containing 1 [Homo sapiens]
Length = 1134
Score = 29.3 bits (64), Expect = 2.6
Identities = 12/18 (66%), Positives = 12/18 (66%)
Query: 194 GGRDPGGGGGEEGGAGGL 211
GG GGGGG GG GGL
Sbjct: 37 GGGSGGGGGGSGGGGGGL 54
Score = 27.7 bits (60), Expect = 7.5
Identities = 11/17 (64%), Positives = 11/17 (64%)
Query: 194 GGRDPGGGGGEEGGAGG 210
GG GGGGG GG GG
Sbjct: 36 GGGGSGGGGGGSGGGGG 52
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.141 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,500,346
Number of Sequences: 37866
Number of extensions: 391463
Number of successful extensions: 3727
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 2999
Number of HSP's gapped (non-prelim): 621
length of query: 212
length of database: 18,247,518
effective HSP length: 98
effective length of query: 114
effective length of database: 14,536,650
effective search space: 1657178100
effective search space used: 1657178100
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.