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Search of human proteins with 19923929
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|19923929 CKLF-like MARVEL transmembrane domain containing 7
isoform a [Homo sapiens]
(175 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|19923929 CKLF-like MARVEL transmembrane domain containing 7 i... 346 5e-96
gi|31657099 CKLF-like MARVEL transmembrane domain containing 7 i... 270 5e-73
gi|31657096 chemokine-like factor superfamily 4 isoform 2 [Homo ... 66 2e-11
gi|30520333 chemokine-like factor superfamily 4 isoform 1 [Homo ... 66 2e-11
gi|4505893 proteolipid protein 2 (colonic epithelium-enriched) [... 57 8e-09
gi|8393581 chemokine-like factor isoform a [Homo sapiens] 51 4e-07
gi|93141024 chemokine-like factor isoform e [Homo sapiens] 45 3e-05
gi|19923993 chemokine-like factor superfamily 5 isoform a [Homo ... 44 5e-05
gi|7705755 plasmolipin [Homo sapiens] 44 5e-05
gi|8923370 CKLF-like MARVEL transmembrane domain containing 6 [H... 44 7e-05
gi|21389567 chemokine-like factor superfamily 2 [Homo sapiens] 36 0.019
gi|82546841 chemokine-like factor superfamily 5 isoform c [Homo ... 34 0.057
gi|32130536 CKLF-like MARVEL transmembrane domain containing 8 [... 33 0.13
gi|32307156 chemokine-like factor isoform d [Homo sapiens] 32 0.37
gi|169164783 PREDICTED: hypothetical protein [Homo sapiens] 30 1.1
gi|169163482 PREDICTED: hypothetical protein [Homo sapiens] 30 1.1
gi|53850574 olfactory receptor, family 5, subfamily U member 1 [... 30 1.1
gi|239741714 PREDICTED: hypothetical protein XP_002342305 [Homo ... 29 1.8
gi|239754714 PREDICTED: hypothetical protein [Homo sapiens] 29 2.4
gi|239743359 PREDICTED: hypothetical protein XP_002342827 [Homo ... 29 2.4
gi|94536811 NEDD4-like ubiquitin-protein ligase 1 [Homo sapiens] 28 3.1
gi|24430146 nucleoporin 153kDa [Homo sapiens] 28 4.1
gi|239753867 PREDICTED: hypothetical protein [Homo sapiens] 28 4.1
gi|239748428 PREDICTED: hypothetical protein XP_002346657 [Homo ... 28 4.1
gi|239742361 PREDICTED: hypothetical protein XP_002342502 [Homo ... 28 4.1
gi|223278415 taste receptor, type 2, member 38 [Homo sapiens] 28 5.3
gi|57222568 myeloid/lymphoid or mixed-lineage leukemia (trithora... 28 5.3
gi|18496983 CAP-GLY domain containing linker protein 3 [Homo sap... 28 5.3
gi|237512982 voltage-gated sodium channel type V alpha isoform f... 27 6.9
gi|237512980 voltage-gated sodium channel type V alpha isoform e... 27 6.9
>gi|19923929 CKLF-like MARVEL transmembrane domain containing 7
isoform a [Homo sapiens]
Length = 175
Score = 346 bits (888), Expect = 5e-96
Identities = 175/175 (100%), Positives = 175/175 (100%)
Query: 1 MSHGAGLVRTTCSSGSALGPGAGAAQPSASPLEGLLDLSYPRTHAALLKVAQMVTLLIAF 60
MSHGAGLVRTTCSSGSALGPGAGAAQPSASPLEGLLDLSYPRTHAALLKVAQMVTLLIAF
Sbjct: 1 MSHGAGLVRTTCSSGSALGPGAGAAQPSASPLEGLLDLSYPRTHAALLKVAQMVTLLIAF 60
Query: 61 ICVRSSLWTNYSAYSYFEVVTICDLIMILAFYLVHLFRFYRVLTCISWPLSELLHYLIGT 120
ICVRSSLWTNYSAYSYFEVVTICDLIMILAFYLVHLFRFYRVLTCISWPLSELLHYLIGT
Sbjct: 61 ICVRSSLWTNYSAYSYFEVVTICDLIMILAFYLVHLFRFYRVLTCISWPLSELLHYLIGT 120
Query: 121 LLLLIASIVAASKSYNQSGLVAGAIFGFMATFLCMASIWLSYKISCVTQSTDAAV 175
LLLLIASIVAASKSYNQSGLVAGAIFGFMATFLCMASIWLSYKISCVTQSTDAAV
Sbjct: 121 LLLLIASIVAASKSYNQSGLVAGAIFGFMATFLCMASIWLSYKISCVTQSTDAAV 175
>gi|31657099 CKLF-like MARVEL transmembrane domain containing 7
isoform b [Homo sapiens]
Length = 142
Score = 270 bits (690), Expect = 5e-73
Identities = 142/175 (81%), Positives = 142/175 (81%), Gaps = 33/175 (18%)
Query: 1 MSHGAGLVRTTCSSGSALGPGAGAAQPSASPLEGLLDLSYPRTHAALLKVAQMVTLLIAF 60
MSHGAGLVRTTCSSGSALGPGAGAAQPSASPLEGLLDLSYPRTHAALLKVAQMVTLLIAF
Sbjct: 1 MSHGAGLVRTTCSSGSALGPGAGAAQPSASPLEGLLDLSYPRTHAALLKVAQMVTLLIAF 60
Query: 61 ICVRSSLWTNYSAYSYFEVVTICDLIMILAFYLVHLFRFYRVLTCISWPLSELLHYLIGT 120
ICVRSSLWTNYSAYSYFEVVTICDLIMILAFYLVHLFRFYRVLTCISWPLS
Sbjct: 61 ICVRSSLWTNYSAYSYFEVVTICDLIMILAFYLVHLFRFYRVLTCISWPLS--------- 111
Query: 121 LLLLIASIVAASKSYNQSGLVAGAIFGFMATFLCMASIWLSYKISCVTQSTDAAV 175
IFGFMATFLCMASIWLSYKISCVTQSTDAAV
Sbjct: 112 ------------------------IFGFMATFLCMASIWLSYKISCVTQSTDAAV 142
>gi|31657096 chemokine-like factor superfamily 4 isoform 2 [Homo
sapiens]
Length = 208
Score = 65.9 bits (159), Expect = 2e-11
Identities = 50/171 (29%), Positives = 82/171 (47%), Gaps = 11/171 (6%)
Query: 13 SSGSALGPGAGAAQPSASP------LEGL-LDLSYPRTHAALLKVAQMVTLLIAFICVRS 65
SS S + + QP+ P L GL D Y R LKVAQ++ LIAFIC+ +
Sbjct: 15 SSTSMISGASSPYQPTTEPVSQRRGLAGLRCDPDYLRGALGRLKVAQVILALIAFICIET 74
Query: 66 SLWTNYSAYSYFEVVTICDLIMILAFYLVHL-FRFYRVLTCISWPLSELLHYLIGTLLLL 124
+ + YF C ++ L+ + + I+W L++L++ + L
Sbjct: 75 IMACSPCEGLYFFEFVSCSAFVVTGVLLIMFSLNLHMRIPQINWNLTDLVNTGLSAFLFF 134
Query: 125 IASIVAASKSYNQSGLVAGAIFGFMATFLCMASIWLS---YKISCVTQSTD 172
IASIV A+ ++ +A IFGF+AT + +L+ +++S QST+
Sbjct: 135 IASIVLAALNHRAGAEIAAVIFGFLATAAYAVNTFLAVQKWRVSVRQQSTN 185
>gi|30520333 chemokine-like factor superfamily 4 isoform 1 [Homo
sapiens]
Length = 234
Score = 65.9 bits (159), Expect = 2e-11
Identities = 50/171 (29%), Positives = 82/171 (47%), Gaps = 11/171 (6%)
Query: 13 SSGSALGPGAGAAQPSASP------LEGL-LDLSYPRTHAALLKVAQMVTLLIAFICVRS 65
SS S + + QP+ P L GL D Y R LKVAQ++ LIAFIC+ +
Sbjct: 15 SSTSMISGASSPYQPTTEPVSQRRGLAGLRCDPDYLRGALGRLKVAQVILALIAFICIET 74
Query: 66 SLWTNYSAYSYFEVVTICDLIMILAFYLVHL-FRFYRVLTCISWPLSELLHYLIGTLLLL 124
+ + YF C ++ L+ + + I+W L++L++ + L
Sbjct: 75 IMACSPCEGLYFFEFVSCSAFVVTGVLLIMFSLNLHMRIPQINWNLTDLVNTGLSAFLFF 134
Query: 125 IASIVAASKSYNQSGLVAGAIFGFMATFLCMASIWLS---YKISCVTQSTD 172
IASIV A+ ++ +A IFGF+AT + +L+ +++S QST+
Sbjct: 135 IASIVLAALNHRAGAEIAAVIFGFLATAAYAVNTFLAVQKWRVSVRQQSTN 185
>gi|4505893 proteolipid protein 2 (colonic epithelium-enriched)
[Homo sapiens]
Length = 152
Score = 57.0 bits (136), Expect = 8e-09
Identities = 36/126 (28%), Positives = 65/126 (51%), Gaps = 8/126 (6%)
Query: 39 SYPRTHAALLKVAQMVTLLIAFICVRSSLWTNYSAYSYFEVVTICDLIMILAFYLVHLFR 98
++ RT +L A+++ L+ IC +S YS+ S E +I+ F++V++
Sbjct: 18 NFSRTRKGILLFAEIILCLVILICFSAST-PGYSSLSVIE------MILAAIFFVVYMCD 70
Query: 99 FYRVLTCISWPLSELLHYLIGTLLLLIASIVAASKSYNQSGLVAGAIFGFMATFLCMASI 158
+ + I+WP S+ LI +L LI SIV + N S +VAG + G +AT L
Sbjct: 71 LHTKIPFINWPWSDFFRTLIAAILYLITSIVVLVERGNHSKIVAG-VLGLIATCLFGYDA 129
Query: 159 WLSYKI 164
++++ +
Sbjct: 130 YVTFPV 135
>gi|8393581 chemokine-like factor isoform a [Homo sapiens]
Length = 152
Score = 51.2 bits (121), Expect = 4e-07
Identities = 32/120 (26%), Positives = 62/120 (51%), Gaps = 9/120 (7%)
Query: 44 HAALLKVAQMVTLLIAFICVRSSLWTNYSAYSYFEVVTICDLIMILAFYLVHLFRFYRVL 103
H +L++A VT + FI + A + V+T ++ +IL F L+++ R R++
Sbjct: 20 HVKMLRLALTVTSMTFFIIAQ--------APEPYIVITGFEVTVILFFILLYVLRLDRLM 71
Query: 104 TCISWPLSELLHYLIGTLLLLIASIVAASKSYNQSGLVAGAIFGFMATFLCMASIWLSYK 163
+ WPL ++++ L+ T+ +LI S++A + V G +F + C+A L Y+
Sbjct: 72 KWLFWPLLDIINSLVTTVFMLIVSVLALIPE-TTTLTVGGGVFALVTAVCCLADGALIYR 130
>gi|93141024 chemokine-like factor isoform e [Homo sapiens]
Length = 113
Score = 45.1 bits (105), Expect = 3e-05
Identities = 25/87 (28%), Positives = 50/87 (57%), Gaps = 8/87 (9%)
Query: 44 HAALLKVAQMVTLLIAFICVRSSLWTNYSAYSYFEVVTICDLIMILAFYLVHLFRFYRVL 103
H +L++A VT + FI + A + V+T ++ +IL F L+++ R R++
Sbjct: 20 HVKMLRLALTVTSMTFFIIAQ--------APEPYIVITGFEVTVILFFILLYVLRLDRLM 71
Query: 104 TCISWPLSELLHYLIGTLLLLIASIVA 130
+ WPL ++++ L+ T+ +LI S++A
Sbjct: 72 KWLFWPLLDIINSLVTTVFMLIVSVLA 98
>gi|19923993 chemokine-like factor superfamily 5 isoform a [Homo
sapiens]
Length = 156
Score = 44.3 bits (103), Expect = 5e-05
Identities = 24/114 (21%), Positives = 52/114 (45%), Gaps = 9/114 (7%)
Query: 36 LDLSYPRTHAALLKVAQMVTLLIAFICVRSSLWTNYSAYSYFEVVTICDLIMILAFYLVH 95
+D ++ +H +L ++ LI FIC +S+ S + + + + LAF ++
Sbjct: 25 VDKAFLTSHKGILLETELALTLIIFICFTASI-------SAYMAAALLEFFITLAFLFLY 77
Query: 96 LFRFYRVLTCISWPLSELLHYLIGTLLLLIASIVAASKSYNQSGLVAGAIFGFM 149
++Y+ I+WP + L + ++ L+ S A + +A +FG +
Sbjct: 78 ATQYYQRFDRINWPCLDFLRCVSAIIIFLVVSFAAVTS--RDGAAIAAFVFGII 129
>gi|7705755 plasmolipin [Homo sapiens]
Length = 182
Score = 44.3 bits (103), Expect = 5e-05
Identities = 34/152 (22%), Positives = 67/152 (44%), Gaps = 14/152 (9%)
Query: 22 AGAAQPSASPLEGLLDLSYPRTHAALLKVAQMVTLLIAFICVRSSLWTNYSAYSYFEVVT 81
A A+ S S L DL + R+ L + Q+V L+ + + + + Y AY + V
Sbjct: 16 AQGAEASVSALRP--DLGFVRSRLGALMLLQLVLGLLVWALIADTPYHLYPAYGWVMFVA 73
Query: 82 ICDLIMILAFYLVHLFRFYRVLTCISWPLSELLHYLIGTLLLLIASIVAA---------- 131
+ ++ + + ++LF+ + L + WPL ++ + T+L + A I +
Sbjct: 74 VFLWLVTIVLFNLYLFQLHMKLYMVPWPLVLMIFNISATVLYITAFIACSAAVDLTSLRG 133
Query: 132 SKSYNQSGLVAGAIFGFMATFLCMASIWLSYK 163
++ YNQ A + F + S + SY+
Sbjct: 134 TRPYNQR--AAASFFACLVMIAYGVSAFFSYQ 163
>gi|8923370 CKLF-like MARVEL transmembrane domain containing 6 [Homo
sapiens]
Length = 183
Score = 43.9 bits (102), Expect = 7e-05
Identities = 46/155 (29%), Positives = 68/155 (43%), Gaps = 10/155 (6%)
Query: 1 MSHGAGLVRTTCSS-GSALGPGAGAAQPSASPLEGLLDLSYPRTHAALLKVAQMVTLLIA 59
M +GA TT G A GP +G A A G L L +LK Q++ L+A
Sbjct: 1 MENGAVYSPTTEEDPGPARGPRSGLA---AYFFMGRLPLL-----RRVLKGLQLLLSLLA 52
Query: 60 FICVRS-SLWTNYSAYSYFEVVTICDLIMILAFYLVHLFRFYRVLTCISWPLSELLHYLI 118
FIC S T +FE V+ ++ L +V+ FY + S+ L
Sbjct: 53 FICEEVVSQCTLCGGLYFFEFVSCSAFLLSLLILIVYCTPFYERVDTTKVKSSDFYITLG 112
Query: 119 GTLLLLIASIVAASKSYNQSGLVAGAIFGFMATFL 153
+ L+ASI+ S S +A +FGF+A+F+
Sbjct: 113 TGCVFLLASIIFVSTHDRTSAEIAAIVFGFIASFM 147
>gi|21389567 chemokine-like factor superfamily 2 [Homo sapiens]
Length = 248
Score = 35.8 bits (81), Expect = 0.019
Identities = 26/109 (23%), Positives = 51/109 (46%), Gaps = 7/109 (6%)
Query: 46 ALLKVAQMVTLLIAFICVRSSLWTNYSAYSYFEVVTICDLIMILAFYLVHLFRFYRVLTC 105
A +K+ + L+ A I L ++ + + ++ ++ F L++ F +R +
Sbjct: 88 AEIKIRSLGCLIAAMI-----LLSSLTVHPILRLIITMEISFFSFFILLYSFAIHRYIPF 142
Query: 106 ISWPLSELLHYLIGTLLLLIASI--VAASKSYNQSGLVAGAIFGFMATF 152
I WP+S+L + LI L+ A + V + +S N L+A + G F
Sbjct: 143 ILWPISDLFNDLIACAFLVGAVVFAVRSRRSMNLHYLLAVILIGAAGVF 191
>gi|82546841 chemokine-like factor superfamily 5 isoform c [Homo
sapiens]
Length = 125
Score = 34.3 bits (77), Expect = 0.057
Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 36 LDLSYPRTHAALLKVAQMVTLLIAFICVRSSLWTNYSAYSYFEVVTICDLIMILAFYLVH 95
+D ++ +H +L ++ LI FIC +S+ S + + + + LAF ++
Sbjct: 25 VDKAFLTSHKGILLETELALTLIIFICFTASI-------SAYMAAALLEFFITLAFLFLY 77
Query: 96 LFRFYRVLTCISWP 109
++Y+ I+WP
Sbjct: 78 ATQYYQRFDRINWP 91
>gi|32130536 CKLF-like MARVEL transmembrane domain containing 8
[Homo sapiens]
Length = 173
Score = 33.1 bits (74), Expect = 0.13
Identities = 26/121 (21%), Positives = 51/121 (42%), Gaps = 14/121 (11%)
Query: 56 LLIAFICVRSSLWTNYSAYSYFEV--------VTICDLIMILAFYLVHLFRFYRVLTCIS 107
L++A I + +WT + YF V V + ++ + F ++++ Y + +
Sbjct: 44 LIVAEIVLGLLVWTLIAGTEYFRVPAFGWVMFVAVFYWVLTVFFLIIYITMTYTRIPQVP 103
Query: 108 WPLSELLHYLIGTLLLLIASIVAASK------SYNQSGLVAGAIFGFMATFLCMASIWLS 161
W L +L L A++V AS S+N + A + F F+ T + + S
Sbjct: 104 WTTVGLCFNGSAFVLYLSAAVVDASSVSPERDSHNFNSWAASSFFAFLVTICYAGNTYFS 163
Query: 162 Y 162
+
Sbjct: 164 F 164
>gi|32307156 chemokine-like factor isoform d [Homo sapiens]
Length = 120
Score = 31.6 bits (70), Expect = 0.37
Identities = 25/97 (25%), Positives = 48/97 (49%), Gaps = 11/97 (11%)
Query: 44 HAALLKVAQMVTLLIAFICVRSSLWTNYSAYSYFEVVTICDLIMILAFYLVHLFRFYRVL 103
H +L++A VT + FI + A + V+T ++ +IL F L+++ R R++
Sbjct: 20 HVKMLRLALTVTSMTFFIIAQ--------APEPYIVITGFEVTVILFFILLYVLRLDRLM 71
Query: 104 TCISWPLSELLHYLIGTLLLLI-ASIVAASKSYNQSG 139
+ WPL L+ L+ + L +++ +N SG
Sbjct: 72 KWLFWPL--LVFALVTAVCCLADGALIYRKLLFNPSG 106
>gi|169164783 PREDICTED: hypothetical protein [Homo sapiens]
Length = 396
Score = 30.0 bits (66), Expect = 1.1
Identities = 18/34 (52%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 11 TCSSGSA-LGPGAGAAQPSASPLEGLLDLSYPRT 43
TCSS SA +G G G AQP + PL L L RT
Sbjct: 64 TCSSSSAGVGGGVGGAQPGSVPLGQHLALERGRT 97
>gi|169163482 PREDICTED: hypothetical protein [Homo sapiens]
Length = 396
Score = 30.0 bits (66), Expect = 1.1
Identities = 18/34 (52%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 11 TCSSGSA-LGPGAGAAQPSASPLEGLLDLSYPRT 43
TCSS SA +G G G AQP + PL L L RT
Sbjct: 64 TCSSSSAGVGGGVGGAQPGSVPLGQHLALERGRT 97
>gi|53850574 olfactory receptor, family 5, subfamily U member 1
[Homo sapiens]
Length = 321
Score = 30.0 bits (66), Expect = 1.1
Identities = 30/127 (23%), Positives = 48/127 (37%), Gaps = 12/127 (9%)
Query: 48 LKVAQMVTLLIAFICVRSSLWTNYSAYSYFEVVTICDLIMILAFYLVHLFRFYRVLTCIS 107
+ + Q + + FI + SS + SY IC + R + I+
Sbjct: 90 ISLVQCILQVFFFIALASSEVAILTVMSYDRYAAICQPLHYETIMDPRACRHAVIAVWIA 149
Query: 108 WPLSELLHYLIGTLLLL------------IASIVAASKSYNQSGLVAGAIFGFMATFLCM 155
LS L+H I + L + ++ + SY +A A F A F+C+
Sbjct: 150 GGLSGLMHAAINFSIPLCGKRVIHQFFCDVPQMLKLACSYEFINEIALAAFTTSAAFICL 209
Query: 156 ASIWLSY 162
SI LSY
Sbjct: 210 ISIVLSY 216
>gi|239741714 PREDICTED: hypothetical protein XP_002342305 [Homo
sapiens]
Length = 231
Score = 29.3 bits (64), Expect = 1.8
Identities = 38/167 (22%), Positives = 67/167 (40%), Gaps = 26/167 (15%)
Query: 3 HGAGLVRTTCSSGSALGP-GAGAAQPSASPLEGLLDL------SYPRTHAALLKVAQMVT 55
H G VR C + P A AA S + L ++ P+TH +V
Sbjct: 64 HEEGRVRCGCRPDARASPLAAPAAAMSGAGLAAVVSCLRPQPGEEPQTHEIF---GFLVW 120
Query: 56 LLIAFICVRSSLWTNYSAYSYFEVVTICDLIMILAFYLVHLFRFYRVLTCISWPLSELLH 115
++A + L + Y V++ ++ L F L +LF FY+ SW + + L+
Sbjct: 121 TMVAATHIVYPLLQGWVMY-----VSLTSFLISLMFLLSYLFGFYKRFE--SWRVLDSLY 173
Query: 116 YLIGTLLLLIASIVAASKSYNQSGLV---------AGAIFGFMATFL 153
+ +L + A+++ + L+ A + F F+AT L
Sbjct: 174 HGTTGILYMSAAVLQVHATIVSEKLLDPRIYYINSAASFFAFIATLL 220
>gi|239754714 PREDICTED: hypothetical protein [Homo sapiens]
Length = 194
Score = 28.9 bits (63), Expect = 2.4
Identities = 19/37 (51%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 6 GLVRT-TCSSGSALGPGAGAAQPSASPLEGLLDLSYP 41
G RT TCSS A GAG+A P ASP G L + P
Sbjct: 150 GFTRTSTCSSMGAQALGAGSA-PGASPFRGSLTKAGP 185
>gi|239743359 PREDICTED: hypothetical protein XP_002342827 [Homo
sapiens]
Length = 194
Score = 28.9 bits (63), Expect = 2.4
Identities = 19/37 (51%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 6 GLVRT-TCSSGSALGPGAGAAQPSASPLEGLLDLSYP 41
G RT TCSS A GAG+A P ASP G L + P
Sbjct: 150 GFTRTSTCSSMGAQALGAGSA-PGASPFRGSLTKAGP 185
>gi|94536811 NEDD4-like ubiquitin-protein ligase 1 [Homo sapiens]
Length = 1606
Score = 28.5 bits (62), Expect = 3.1
Identities = 29/88 (32%), Positives = 38/88 (43%), Gaps = 13/88 (14%)
Query: 11 TCSSGSALGPGAGAAQPSASPLEGLLDLSYPRTHAALLKV-AQMVTLLIAFICVR----- 64
+C A G G G + A + LDL R +L V +Q +TLL+ V+
Sbjct: 905 SCEQAPAGGGGGGGSDSEAESSQSSLDL---RREGSLSPVNSQKITLLLQSPAVKFITNP 961
Query: 65 ---SSLWTNYSAYSYFEVVTICDLIMIL 89
+ L NYSAY F T C MIL
Sbjct: 962 EFFTVLHANYSAYRVFTSST-CLKHMIL 988
>gi|24430146 nucleoporin 153kDa [Homo sapiens]
Length = 1475
Score = 28.1 bits (61), Expect = 4.1
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 4 GAGLVRTTCSSGSALGPGAGAAQPSASPLEG 34
G G T+ S+GS+ G G + PSASP G
Sbjct: 1290 GFGATTTSSSAGSSFVFGTGPSAPSASPAFG 1320
>gi|239753867 PREDICTED: hypothetical protein [Homo sapiens]
Length = 215
Score = 28.1 bits (61), Expect = 4.1
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Query: 4 GAGLV-----RTTCSSGSALGPGAGAAQPSASPLEGLLDLSYPRTHAALLKVAQMVTL 56
GAG V R + G G G G+ Q A PL L PR ALL ++ +TL
Sbjct: 72 GAGPVAACRPRAAAAGGPTDGKGRGSCQRVAGPLRWRNLLFLPRLAGALLSLSVSLTL 129
>gi|239748428 PREDICTED: hypothetical protein XP_002346657 [Homo
sapiens]
Length = 215
Score = 28.1 bits (61), Expect = 4.1
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Query: 4 GAGLV-----RTTCSSGSALGPGAGAAQPSASPLEGLLDLSYPRTHAALLKVAQMVTL 56
GAG V R + G G G G+ Q A PL L PR ALL ++ +TL
Sbjct: 72 GAGPVAACRPRAAAAGGPTDGKGRGSCQRVAGPLRWRNLLFLPRLAGALLSLSVSLTL 129
>gi|239742361 PREDICTED: hypothetical protein XP_002342502 [Homo
sapiens]
Length = 215
Score = 28.1 bits (61), Expect = 4.1
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Query: 4 GAGLV-----RTTCSSGSALGPGAGAAQPSASPLEGLLDLSYPRTHAALLKVAQMVTL 56
GAG V R + G G G G+ Q A PL L PR ALL ++ +TL
Sbjct: 72 GAGPVAACRPRAAAAGGPTDGKGRGSCQRVAGPLRWRNLLFLPRLAGALLSLSVSLTL 129
>gi|223278415 taste receptor, type 2, member 38 [Homo sapiens]
Length = 333
Score = 27.7 bits (60), Expect = 5.3
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 49 KVAQMVT--LLIAFICVRSSLWTNYSAYSYFEVVTICDLI--MILAFYLVHLFRFYRVLT 104
K++QM+ +L + IC +W +S +F V T+ + L + + L FY L
Sbjct: 139 KISQMLLGIILCSCICTVLCVWCFFSR-PHFTVTTVLFMNNNTRLNWQIKDLNLFYSFLF 197
Query: 105 CISWPLSELLHYLIGTLLLLIA 126
C W + L +L+ + +L ++
Sbjct: 198 CYLWSVPPFLLFLVSSGMLTVS 219
>gi|57222568 myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila); translocated to, 6 [Homo sapiens]
Length = 1093
Score = 27.7 bits (60), Expect = 5.3
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Query: 1 MSHGAGLVRTTCS---SGSALGPGAGAAQP--SASPLEGLLDLS 39
+SH G++R CS S S LGP +A P S SP L S
Sbjct: 560 ISHSGGMLRAVCSTPLSSSLLGPPGTSALPRLSRSPFTSTLPSS 603
>gi|18496983 CAP-GLY domain containing linker protein 3 [Homo
sapiens]
Length = 547
Score = 27.7 bits (60), Expect = 5.3
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 45 AALLKVAQMVTLLIAFICVRSSLWTNYSAYSYFEVVTICDLIMIL 89
AA ++++Q + L A + +RS WTN +A Y + DL+ +L
Sbjct: 137 AAAVRLSQQLLALGADVTLRSR-WTNMNALHYAAYFDVPDLVRVL 180
>gi|237512982 voltage-gated sodium channel type V alpha isoform f
[Homo sapiens]
Length = 1962
Score = 27.3 bits (59), Expect = 6.9
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 68 WTNYSAYSYFEVVTICDLIMILA-FYLVHLFRFYR 101
WT Y Y++ + T L+ ILA + +H F F R
Sbjct: 156 WTKYVEYTFTAIYTFESLVKILARGFCLHAFTFLR 190
>gi|237512980 voltage-gated sodium channel type V alpha isoform e
[Homo sapiens]
Length = 1983
Score = 27.3 bits (59), Expect = 6.9
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 68 WTNYSAYSYFEVVTICDLIMILA-FYLVHLFRFYR 101
WT Y Y++ + T L+ ILA + +H F F R
Sbjct: 156 WTKYVEYTFTAIYTFESLVKILARGFCLHAFTFLR 190
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.327 0.136 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,103,203
Number of Sequences: 37866
Number of extensions: 227148
Number of successful extensions: 1251
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1220
Number of HSP's gapped (non-prelim): 53
length of query: 175
length of database: 18,247,518
effective HSP length: 95
effective length of query: 80
effective length of database: 14,650,248
effective search space: 1172019840
effective search space used: 1172019840
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.