Guide to the Human Genome
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Name: FAM113B Sequence: fasta or formatted (432aa) NCBI GI: 19923901
Description:

hypothetical protein LOC91523

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.9         21           1
 C cysteine            1.4          6           1
 D aspartate           4.2         18           1
 E glutamate           4.9         21           2
 F phenylalanine       5.3         23           2
 G glycine             6.5         28           2
 H histidine           5.8         25           2
 I isoleucine          1.6          7           1
 K lysine              3.2         14           4
 L leucine            12.0         52           3
 M methionine          1.6          7           1
 N asparagine          4.2         18           1
 P proline            11.6         50           4
 Q glutamine           5.1         22           1
 R arginine            8.8         38           2
 S serine              5.1         22           2
 T threonine           2.5         11           1
 V valine              6.7         29           2
 W tryptophan          1.9          8           1
 Y tyrosine            2.8         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC91523 
FAM113A               0.415   hypothetical protein LOC64773 
PTPN23                0.023   protein tyrosine phosphatase, non-receptor type 23 [...
WIPF3                 0.023   WAS/WASL interacting protein family, member 3 [Homo...
MLL2                  0.021   myeloid/lymphoid or mixed-lineage leukemia 2 
SETD1B                0.021   SET domain containing 1B 
PRR12                 0.021   proline rich 12 
SFRS15                0.021   splicing factor, arginine/serine-rich 15 isoform 3 ...
SFRS15                0.021   splicing factor, arginine/serine-rich 15 isoform 2 ...
SFRS15                0.021   splicing factor, arginine/serine-rich 15 isoform 1 [...
CCNK                  0.021   cyclin K isoform 1 
SYVN1                 0.020   synoviolin 1 isoform b 
MAPK1IP1L             0.020   MAPK-interacting and spindle-stabilizing protein [Ho...
PRB2                  0.019   proline-rich protein BstNI subfamily 2 
BAI1                  0.019   brain-specific angiogenesis inhibitor 1 precursor [...
NHSL1                 0.018   NHS-like 1 
SYVN1                 0.018   synoviolin 1 isoform a 
FMN2                  0.018   formin 2 
PRB1                  0.018   proline-rich protein BstNI subfamily 1 isoform 1 pre...
C6orf132              0.017   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.017   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.017   PREDICTED: hypothetical protein LOC647024 
RBM33                 0.017   RNA binding motif protein 33 
RNASEN                0.017   ribonuclease III, nuclear isoform 2 
RNASEN                0.017   ribonuclease III, nuclear isoform 1 
WBP11                 0.017   WW domain binding protein 11 
FGD1                  0.017   faciogenital dysplasia protein 
SAMD1                 0.017   sterile alpha motif domain containing 1 
INF2                  0.016   inverted formin 2 isoform 2 
INF2                  0.016   inverted formin 2 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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