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Search of human proteins with 19882259
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|19882259 cystatin-like 1 precursor [Homo sapiens]
(145 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|19882259 cystatin-like 1 precursor [Homo sapiens] 303 4e-83
gi|4885163 cystatin 8 precursor [Homo sapiens] 76 1e-14
gi|19882249 cystatin 11 isoform 1 precursor [Homo sapiens] 72 2e-13
gi|4503107 cystatin C precursor [Homo sapiens] 69 1e-12
gi|4503105 cystatin SA precursor [Homo sapiens] 67 4e-12
gi|18104940 cystatin 9-like precursor [Homo sapiens] 64 3e-11
gi|4503113 cystatin M precursor [Homo sapiens] 64 4e-11
gi|20302139 cystatin F [Homo sapiens] 64 4e-11
gi|4503109 cystatin S precursor [Homo sapiens] 62 1e-10
gi|19882251 cystatin SN precursor [Homo sapiens] 62 2e-10
gi|19882256 cystatin D precursor [Homo sapiens] 59 1e-09
gi|4504893 kininogen 1 isoform 2 [Homo sapiens] 48 3e-06
gi|156231037 kininogen 1 isoform 1 [Homo sapiens] 48 3e-06
gi|154813199 poly (ADP-ribose) polymerase family, member 14 [Hom... 30 0.71
gi|169214772 PREDICTED: similar to hCG1783157 [Homo sapiens] 30 0.93
gi|18644732 cystatin 11 isoform 2 precursor [Homo sapiens] 29 1.2
gi|239751973 PREDICTED: hypothetical protein XP_002348052 [Homo ... 28 2.7
gi|239746455 PREDICTED: hypothetical protein XP_002344215 [Homo ... 28 2.7
gi|217035164 coiled-coil domain containing 27 [Homo sapiens] 27 4.6
gi|169646723 glycine receptor, alpha 2 isoform A [Homo sapiens] 27 6.0
gi|4504021 glycine receptor, alpha 2 isoform A [Homo sapiens] 27 6.0
gi|218156328 glycine receptor, alpha 4 precursor [Homo sapiens] 27 6.0
gi|42734393 forkhead box R1 [Homo sapiens] 27 7.9
gi|169646728 glycine receptor, alpha 2 isoform B [Homo sapiens] 27 7.9
>gi|19882259 cystatin-like 1 precursor [Homo sapiens]
Length = 145
Score = 303 bits (775), Expect = 4e-83
Identities = 145/145 (100%), Positives = 145/145 (100%)
Query: 1 MGIGCWRNPLLLLIALVLSAKLGHFQRWEGFQQKLMSKKNMNSTLNFFIQSYNNASNDTY 60
MGIGCWRNPLLLLIALVLSAKLGHFQRWEGFQQKLMSKKNMNSTLNFFIQSYNNASNDTY
Sbjct: 1 MGIGCWRNPLLLLIALVLSAKLGHFQRWEGFQQKLMSKKNMNSTLNFFIQSYNNASNDTY 60
Query: 61 LYRVQRLIRSQMQLTTGVEYIVTVKIGWTKCKRNDTSNSSCPLQSKKLRKSLICESLIYT 120
LYRVQRLIRSQMQLTTGVEYIVTVKIGWTKCKRNDTSNSSCPLQSKKLRKSLICESLIYT
Sbjct: 61 LYRVQRLIRSQMQLTTGVEYIVTVKIGWTKCKRNDTSNSSCPLQSKKLRKSLICESLIYT 120
Query: 121 MPWINYFQLWNNSCLEAEHVGRNLR 145
MPWINYFQLWNNSCLEAEHVGRNLR
Sbjct: 121 MPWINYFQLWNNSCLEAEHVGRNLR 145
>gi|4885163 cystatin 8 precursor [Homo sapiens]
Length = 142
Score = 75.9 bits (185), Expect = 1e-14
Identities = 42/137 (30%), Positives = 74/137 (54%), Gaps = 5/137 (3%)
Query: 6 WRNPLLLLIALVLSAKLGHFQRWEGFQQKLM----SKKNMNSTLNFFIQSYNNASNDTYL 61
W + +LL I L L A+ + G +KL S N+ L F +Q YN S D Y+
Sbjct: 6 WLSLILLTIPLALVARKDPKKNETGVLRKLKPVNASNANVKQCLWFAMQEYNKESEDKYV 65
Query: 62 YRVQRLIRSQMQLTTGVEYIVTVKIGWTKCKRNDTSNSSCPLQ-SKKLRKSLICESLIYT 120
+ V + +++Q+Q+T +EY++ V+I + C++ ++N C +Q + KL++ L C L+
Sbjct: 66 FLVVKTLQAQLQVTNLLEYLIDVEIARSDCRKPLSTNEICAIQENSKLKRKLSCSFLVGA 125
Query: 121 MPWINYFQLWNNSCLEA 137
+PW F + C +A
Sbjct: 126 LPWNGEFTVMEKKCEDA 142
>gi|19882249 cystatin 11 isoform 1 precursor [Homo sapiens]
Length = 138
Score = 72.0 bits (175), Expect = 2e-13
Identities = 39/132 (29%), Positives = 73/132 (55%), Gaps = 5/132 (3%)
Query: 6 WRNPLLLLIALVLSAKLGHFQRWEGFQQ--KLMSKKNM-NSTLNFFIQSYNNASNDTYLY 62
W+ LLL L+ L + R + F ++M+ +N +L + YN S+D Y +
Sbjct: 6 WQALQLLLAILLTLMALPYQARKKTFLSVHEVMAVENYAKDSLQWITDQYNKESDDKYHF 65
Query: 63 RVQRLIRSQMQLTTGVEYIVTVKIGWTKCKRNDTSNSSCPLQSKKLRKSLICESLIYTMP 122
R+ R+++ Q Q+T +EY + V++ WT C++ +T+N C Q ++L K + C ++ +P
Sbjct: 66 RIFRVLKVQRQVTDHLEYHLNVEMQWTTCQKPETTN--CVPQERELHKQVNCFFSVFAVP 123
Query: 123 WINYFQLWNNSC 134
W +++ N SC
Sbjct: 124 WFEQYKILNKSC 135
>gi|4503107 cystatin C precursor [Homo sapiens]
Length = 146
Score = 69.3 bits (168), Expect = 1e-12
Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 10/144 (6%)
Query: 4 GCWRNPLLLL----IALVLSAKLGHF-----QRWEGFQQKLMSKKNMNSTLNFFIQSYNN 54
G R PLLLL +AL +S G + G + ++ + L+F + YN
Sbjct: 3 GPLRAPLLLLAILAVALAVSPAAGSSPGKPPRLVGGPMDASVEEEGVRRALDFAVGEYNK 62
Query: 55 ASNDTYLYRVQRLIRSQMQLTTGVEYIVTVKIGWTKCKRNDTSNSSCPLQSK-KLRKSLI 113
ASND Y R +++R++ Q+ GV Y + V++G T C + + +CP + L++
Sbjct: 63 ASNDMYHSRALQVVRARKQIVAGVNYFLDVELGRTTCTKTQPNLDNCPFHDQPHLKRKAF 122
Query: 114 CESLIYTMPWINYFQLWNNSCLEA 137
C IY +PW L ++C +A
Sbjct: 123 CSFQIYAVPWQGTMTLSKSTCQDA 146
>gi|4503105 cystatin SA precursor [Homo sapiens]
Length = 141
Score = 67.4 bits (163), Expect = 4e-12
Identities = 31/103 (30%), Positives = 57/103 (55%), Gaps = 1/103 (0%)
Query: 36 MSKKNMNSTLNFFIQSYNNASNDTYLYRVQRLIRSQMQLTTGVEYIVTVKIGWTKCKRND 95
++ + + L+F I YN A+ D Y R+ R++R++ Q+ GV Y +++G T C ++
Sbjct: 39 LNDERVQRALHFVISEYNKATEDEYYRRLLRVLRAREQIVGGVNYFFDIEVGRTICTKSQ 98
Query: 96 TSNSSCPL-QSKKLRKSLICESLIYTMPWINYFQLWNNSCLEA 137
+ +C + +L+K +C IY +PW + L N+ C EA
Sbjct: 99 PNLDTCAFHEQPELQKKQLCSFQIYEVPWEDRMSLVNSRCQEA 141
>gi|18104940 cystatin 9-like precursor [Homo sapiens]
Length = 147
Score = 64.3 bits (155), Expect = 3e-11
Identities = 37/136 (27%), Positives = 66/136 (48%), Gaps = 2/136 (1%)
Query: 6 WRNPLLLLIALVLSAKLGHFQRWEGFQQKLMSKKNMNSTLNFFIQSYNNASNDTYLYRVQ 65
W LLLL + +L HF + + + + +T+ F + ++N S D Y YR+
Sbjct: 12 WALLLLLLGSQILLIYAWHFHEQRDCDEHNVMARYLPATVEFAVHTFNQQSKDYYAYRLG 71
Query: 66 RLIRS-QMQLTTGVEYIVTVKIGWTKCKRNDTSNSSCPLQ-SKKLRKSLICESLIYTMPW 123
++ S + Q+ + + + + +G T+C + + +C Q S +L + C I T PW
Sbjct: 72 HILNSWKEQVESKTVFSMELLLGRTRCGKFEDDIDNCHFQESTELNNTFTCFFTISTRPW 131
Query: 124 INYFQLWNNSCLEAEH 139
+ F L N +CLE H
Sbjct: 132 MTQFSLLNKTCLEGFH 147
>gi|4503113 cystatin M precursor [Homo sapiens]
Length = 149
Score = 63.9 bits (154), Expect = 4e-11
Identities = 28/93 (30%), Positives = 54/93 (58%), Gaps = 5/93 (5%)
Query: 49 IQSYNNASNDTYLYRVQRLIRSQMQLTTGVEYIVTVKIGWTKCKRNDTSN-----SSCPL 103
+ SYN SN Y +R +I++Q QL G++Y +T+++G T C++ + ++CPL
Sbjct: 56 VASYNMGSNSIYYFRDTHIIKAQSQLVAGIKYFLTMEMGSTDCRKTRVTGDHVDLTTCPL 115
Query: 104 QSKKLRKSLICESLIYTMPWINYFQLWNNSCLE 136
+ ++ L C+ + +PW N QL ++C++
Sbjct: 116 AAGAQQEKLRCDFEVLVVPWQNSSQLLKHNCVQ 148
>gi|20302139 cystatin F [Homo sapiens]
Length = 167
Score = 63.9 bits (154), Expect = 4e-11
Identities = 26/85 (30%), Positives = 55/85 (64%), Gaps = 2/85 (2%)
Query: 47 FFIQSYNNASNDTYLYRVQRLIRSQMQLTTGVEYIVTVKIGWTKCKRNDTSN-SSCPLQS 105
+ ++ +NN +ND +L++ R+ R+ +Q+ G++Y++ V+IG T CK+N C Q+
Sbjct: 77 YSVEKFNNCTNDMFLFKESRITRALVQIVKGLKYMLEVEIGRTTCKKNQHLRLDDCDFQT 136
Query: 106 K-KLRKSLICESLIYTMPWINYFQL 129
L+++L C S ++ +PW+ +F++
Sbjct: 137 NHTLKQTLSCYSEVWVVPWLQHFEV 161
>gi|4503109 cystatin S precursor [Homo sapiens]
Length = 141
Score = 62.4 bits (150), Expect = 1e-10
Identities = 38/134 (28%), Positives = 65/134 (48%), Gaps = 7/134 (5%)
Query: 11 LLLIALVLSAKLGHFQRWE------GFQQKLMSKKNMNSTLNFFIQSYNNASNDTYLYRV 64
LLL+ L+ L + E G ++ + + L+F I YN A+ D Y R
Sbjct: 8 LLLLMATLAGALASSSKEENRIIPGGIYDADLNDEWVQRALHFAISEYNKATEDEYYRRP 67
Query: 65 QRLIRSQMQLTTGVEYIVTVKIGWTKCKRNDTSNSSCPL-QSKKLRKSLICESLIYTMPW 123
+++R++ Q GV Y V++G T C ++ + +C + +L+K +C IY +PW
Sbjct: 68 LQVLRAREQTFGGVNYFFDVEVGRTICTKSQPNLDTCAFHEQPELQKKQLCSFEIYEVPW 127
Query: 124 INYFQLWNNSCLEA 137
+ L N+ C EA
Sbjct: 128 EDRMSLVNSRCQEA 141
>gi|19882251 cystatin SN precursor [Homo sapiens]
Length = 141
Score = 62.0 bits (149), Expect = 2e-10
Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 7/134 (5%)
Query: 11 LLLIALVLSAKLGHFQRWE------GFQQKLMSKKNMNSTLNFFIQSYNNASNDTYLYRV 64
LLL+ L+ L + E G ++ + + L+F I YN A+ D Y R
Sbjct: 8 LLLLLATLAVALAWSPKEEDRIIPGGIYNADLNDEWVQRALHFAISEYNKATKDDYYRRP 67
Query: 65 QRLIRSQMQLTTGVEYIVTVKIGWTKCKRNDTSNSSCPL-QSKKLRKSLICESLIYTMPW 123
R++R++ Q GV Y V++G T C ++ + +C + +L+K +C IY +PW
Sbjct: 68 LRVLRARQQTVGGVNYFFDVEVGRTICTKSQPNLDTCAFHEQPELQKKQLCSFEIYEVPW 127
Query: 124 INYFQLWNNSCLEA 137
N L + C E+
Sbjct: 128 ENRRSLVKSRCQES 141
>gi|19882256 cystatin D precursor [Homo sapiens]
Length = 142
Score = 58.9 bits (141), Expect = 1e-09
Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 6/132 (4%)
Query: 9 PLLLLIALVL----SAKLGHFQRWEGFQQKLMSKKNMNSTLNFFIQSYNNASN-DTYLYR 63
PLLLL AL++ SA G ++ K++ L+F I YN N D Y R
Sbjct: 8 PLLLLTALMVAVAGSASAQSRTLAGGIHATDLNDKSVQCALDFAISEYNKVINKDEYYSR 67
Query: 64 VQRLIRSQMQLTTGVEYIVTVKIGWTKCKRNDTSNSSCPLQSK-KLRKSLICESLIYTMP 122
+++ + Q+ GV Y VK G T C ++ + +CP + KL++ C I +P
Sbjct: 68 PLQVMAAYQQIVGGVNYYFNVKFGRTTCTKSQPNLDNCPFNDQPKLKEEEFCSFQINEVP 127
Query: 123 WINYFQLWNNSC 134
W + + N C
Sbjct: 128 WEDKISILNYKC 139
>gi|4504893 kininogen 1 isoform 2 [Homo sapiens]
Length = 427
Score = 47.8 bits (112), Expect = 3e-06
Identities = 20/83 (24%), Positives = 42/83 (50%)
Query: 41 MNSTLNFFIQSYNNASNDTYLYRVQRLIRSQMQLTTGVEYIVTVKIGWTKCKRNDTSNSS 100
+ TL I N +N T+ +++ + ++++Q+ G +Y + T C + +
Sbjct: 278 LEETLTHTITKLNAENNATFYFKIDNVKKARVQVVAGKKYFIDFVARETTCSKESNEELT 337
Query: 101 CPLQSKKLRKSLICESLIYTMPW 123
++KKL +SL C + +Y +PW
Sbjct: 338 ESCETKKLGQSLDCNAEVYVVPW 360
Score = 32.0 bits (71), Expect = 0.19
Identities = 14/56 (25%), Positives = 29/56 (51%)
Query: 40 NMNSTLNFFIQSYNNASNDTYLYRVQRLIRSQMQLTTGVEYIVTVKIGWTKCKRND 95
++ L IQ +NN + + L+ + + R+Q Q+ G+ + +T I T C + +
Sbjct: 155 DLEPILRHGIQYFNNNTQHSSLFMLNEVKRAQRQVVAGLNFRITYSIVQTNCSKEN 210
>gi|156231037 kininogen 1 isoform 1 [Homo sapiens]
Length = 644
Score = 47.8 bits (112), Expect = 3e-06
Identities = 20/83 (24%), Positives = 42/83 (50%)
Query: 41 MNSTLNFFIQSYNNASNDTYLYRVQRLIRSQMQLTTGVEYIVTVKIGWTKCKRNDTSNSS 100
+ TL I N +N T+ +++ + ++++Q+ G +Y + T C + +
Sbjct: 278 LEETLTHTITKLNAENNATFYFKIDNVKKARVQVVAGKKYFIDFVARETTCSKESNEELT 337
Query: 101 CPLQSKKLRKSLICESLIYTMPW 123
++KKL +SL C + +Y +PW
Sbjct: 338 ESCETKKLGQSLDCNAEVYVVPW 360
Score = 32.0 bits (71), Expect = 0.19
Identities = 14/56 (25%), Positives = 29/56 (51%)
Query: 40 NMNSTLNFFIQSYNNASNDTYLYRVQRLIRSQMQLTTGVEYIVTVKIGWTKCKRND 95
++ L IQ +NN + + L+ + + R+Q Q+ G+ + +T I T C + +
Sbjct: 155 DLEPILRHGIQYFNNNTQHSSLFMLNEVKRAQRQVVAGLNFRITYSIVQTNCSKEN 210
>gi|154813199 poly (ADP-ribose) polymerase family, member 14 [Homo
sapiens]
Length = 1801
Score = 30.0 bits (66), Expect = 0.71
Identities = 29/142 (20%), Positives = 60/142 (42%), Gaps = 27/142 (19%)
Query: 24 HFQRWEGFQQKLMSKKNMN------------STLNFFIQSYNNASNDTYL---------Y 62
H ++W+G L+ K+N + +T I N+TY
Sbjct: 610 HGKKWKGLTHNLLKKQNSSPNTVIINELTSETTAEVIITGCVKEVNETYKLLFNFVEQNM 669
Query: 63 RVQRLIRSQMQLTTGVEYIVT-VKIGWTKCKRNDTSNSSCPLQSKKLRKSLICESLIYTM 121
+++RL+ + L ++Y+ T K+ W K K+ + S P K + L+ S +
Sbjct: 670 KIERLVEVKPSLV--IDYLKTEKKLFWPKIKKVNVQVSFNP--ENKQKGILLTGSKTEVL 725
Query: 122 PWINYF-QLWNNSCLEAEHVGR 142
++ Q+W++ C+++ H +
Sbjct: 726 KAVDIVKQVWDSVCVKSVHTDK 747
>gi|169214772 PREDICTED: similar to hCG1783157 [Homo sapiens]
Length = 538
Score = 29.6 bits (65), Expect = 0.93
Identities = 18/86 (20%), Positives = 37/86 (43%), Gaps = 18/86 (20%)
Query: 43 STLNFFIQSYNNASNDTYLYRVQRLIRSQMQLT------------------TGVEYIVTV 84
+++ F + +N + + Y +R+ + R+Q +++ GV +
Sbjct: 395 ASMEFAVAQFNEDNMEEYTHRLLEVQRAQQKVSGSHFVHSQNSLHRLNSSKPGVMAAGDL 454
Query: 85 KIGWTKCKRNDTSNSSCPLQSKKLRK 110
++G T CK+ D +CPLQ K
Sbjct: 455 EMGLTICKKYDEDIDNCPLQEGSAEK 480
>gi|18644732 cystatin 11 isoform 2 precursor [Homo sapiens]
Length = 103
Score = 29.3 bits (64), Expect = 1.2
Identities = 26/132 (19%), Positives = 50/132 (37%), Gaps = 40/132 (30%)
Query: 6 WRNPLLLLIALVLSAKLGHFQRWEGFQQ--KLMSKKNM-NSTLNFFIQSYNNASNDTYLY 62
W+ LLL L+ L + R + F ++M+ +N +L + YN S+D Y +
Sbjct: 6 WQALQLLLAILLTLMALPYQARKKTFLSVHEVMAVENYAKDSLQWITDQYNKESDDKYHF 65
Query: 63 RVQRLIRSQMQLTTGVEYIVTVKIGWTKCKRNDTSNSSCPLQSKKLRKSLICESLIYTMP 122
R+ R+++ Q R+ + C ++ +P
Sbjct: 66 RIFRVLKVQ-------------------------------------RQQVNCFFSVFAVP 88
Query: 123 WINYFQLWNNSC 134
W +++ N SC
Sbjct: 89 WFEQYKILNKSC 100
>gi|239751973 PREDICTED: hypothetical protein XP_002348052 [Homo
sapiens]
Length = 537
Score = 28.1 bits (61), Expect = 2.7
Identities = 18/87 (20%), Positives = 38/87 (43%), Gaps = 20/87 (22%)
Query: 43 STLNFFIQSYNNASNDTYLYRVQRLIRSQMQLTTGVEYIVT------------------- 83
+++ F + +N + + Y +R+ + R+Q Q +G ++ +
Sbjct: 394 ASMEFAVAQFNEDNMEEYTHRLLEVQRAQ-QKVSGSHFVHSQNSLHRLNSSKPVVMAAGD 452
Query: 84 VKIGWTKCKRNDTSNSSCPLQSKKLRK 110
+++G T CK+ D +CPLQ K
Sbjct: 453 LEMGLTICKKYDEDIDNCPLQEGSAEK 479
>gi|239746455 PREDICTED: hypothetical protein XP_002344215 [Homo
sapiens]
Length = 537
Score = 28.1 bits (61), Expect = 2.7
Identities = 18/87 (20%), Positives = 38/87 (43%), Gaps = 20/87 (22%)
Query: 43 STLNFFIQSYNNASNDTYLYRVQRLIRSQMQLTTGVEYIVT------------------- 83
+++ F + +N + + Y +R+ + R+Q Q +G ++ +
Sbjct: 394 ASMEFAVAQFNEDNMEEYTHRLLEVQRAQ-QKVSGSHFVHSQNSLHRLNSSKPVVMAAGD 452
Query: 84 VKIGWTKCKRNDTSNSSCPLQSKKLRK 110
+++G T CK+ D +CPLQ K
Sbjct: 453 LEMGLTICKKYDEDIDNCPLQEGSAEK 479
>gi|217035164 coiled-coil domain containing 27 [Homo sapiens]
Length = 656
Score = 27.3 bits (59), Expect = 4.6
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 12/76 (15%)
Query: 24 HFQRWEGFQQKLMSKKNMNSTLNFFIQSYNNASNDTYLYRVQRLIRSQMQLTTGVEYIVT 83
H QRW+ Q+ L SKK M + + + ++ R++RL +Q T
Sbjct: 546 HLQRWKQLQEDLQSKKEMIQQ----AEQHTRVALESSQSRLERLRNKIIQ--------AT 593
Query: 84 VKIGWTKCKRNDTSNS 99
I TK N+ S++
Sbjct: 594 FSISGTKSLANEISDN 609
>gi|169646723 glycine receptor, alpha 2 isoform A [Homo sapiens]
Length = 452
Score = 26.9 bits (58), Expect = 6.0
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 41 MNSTLNFFIQSYNNASNDTYLYRVQRLIRSQ 71
+N T N FI S+ + + T YRV +R Q
Sbjct: 71 VNVTCNIFINSFGSVTETTMDYRVNIFLRQQ 101
>gi|4504021 glycine receptor, alpha 2 isoform A [Homo sapiens]
Length = 452
Score = 26.9 bits (58), Expect = 6.0
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 41 MNSTLNFFIQSYNNASNDTYLYRVQRLIRSQ 71
+N T N FI S+ + + T YRV +R Q
Sbjct: 71 VNVTCNIFINSFGSVTETTMDYRVNIFLRQQ 101
>gi|218156328 glycine receptor, alpha 4 precursor [Homo sapiens]
Length = 417
Score = 26.9 bits (58), Expect = 6.0
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 41 MNSTLNFFIQSYNNASNDTYLYRVQRLIRSQ 71
+N T N FI S+++ + T YRV +R Q
Sbjct: 71 VNVTCNIFINSFSSITKTTMDYRVNVFLRQQ 101
>gi|42734393 forkhead box R1 [Homo sapiens]
Length = 292
Score = 26.6 bits (57), Expect = 7.9
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 102 PLQSKKLRKSLICESLIYTMPWINYFQL 129
PLQS++LR++ +++ P +NYF L
Sbjct: 154 PLQSRRLRQASSQAGRLWSRPPLNYFHL 181
>gi|169646728 glycine receptor, alpha 2 isoform B [Homo sapiens]
Length = 452
Score = 26.6 bits (57), Expect = 7.9
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 41 MNSTLNFFIQSYNNASNDTYLYRVQRLIRSQ 71
+N T N FI S+ + + T YRV +R Q
Sbjct: 71 VNVTCNIFINSFGSIAETTMDYRVNIFLRQQ 101
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.134 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,961,368
Number of Sequences: 37866
Number of extensions: 169237
Number of successful extensions: 405
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 372
Number of HSP's gapped (non-prelim): 27
length of query: 145
length of database: 18,247,518
effective HSP length: 92
effective length of query: 53
effective length of database: 14,763,846
effective search space: 782483838
effective search space used: 782483838
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.