Search of human proteins with 197333837

Search of human proteins with 197333837

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|197333837 notochord homeobox [Homo sapiens]
         (251 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|197333837 notochord homeobox [Homo sapiens]                        520   e-148
gi|12707580 paired-like homeobox 2b [Homo sapiens]                     76   2e-14
gi|111120318 NK6 transcription factor related, locus 1 [Homo sap...    76   3e-14
gi|94536800 empty spiracles homolog 1 [Homo sapiens]                   74   2e-13
gi|46249382 paired-like homeobox 2a [Homo sapiens]                     73   2e-13
gi|113204604 aristaless-like homeobox 3 [Homo sapiens]                 73   3e-13
gi|57232759 intestine-specific homeobox [Homo sapiens]                 72   5e-13
gi|14149611 empty spiracles homeobox 2 [Homo sapiens]                  72   6e-13
gi|55743092 aristaless-like homeobox 4 [Homo sapiens]                  70   2e-12
gi|4502365 NK3 homeobox 2 [Homo sapiens]                               68   7e-12
gi|239754062 PREDICTED: orthopedia homeobox [Homo sapiens]             68   9e-12
gi|24497589 aristaless related homeobox [Homo sapiens]                 68   9e-12
gi|14149760 orthopedia homeobox [Homo sapiens]                         68   9e-12
gi|24497515 homeobox A3 isoform b [Homo sapiens]                       67   1e-11
gi|24497513 homeobox A3 isoform a [Homo sapiens]                       67   1e-11
gi|13562112 homeobox A3 isoform a [Homo sapiens]                       67   1e-11
gi|19923391 homeobox D3 [Homo sapiens]                                 67   1e-11
gi|5902024 paired mesoderm homeobox 1 isoform pmx-1a [Homo sapiens]    67   1e-11
gi|12707577 paired mesoderm homeobox 1 isoform pmx-1b [Homo sapi...    67   1e-11
gi|4505619 paired box 7 isoform 1 [Homo sapiens]                       66   3e-11
gi|7524359 paired box 7 isoform 2 [Homo sapiens]                       66   3e-11
gi|207029223 paired box 7 isoform 3 [Homo sapiens]                     66   3e-11
gi|7110735 ventral anterior homeobox 2 [Homo sapiens]                  66   3e-11
gi|162951873 ventral anterior homeobox 1 isoform a [Homo sapiens]      66   3e-11
gi|89145413 short stature homeobox 2 isoform a [Homo sapiens]          65   4e-11
gi|87044888 short stature homeobox 2 isoform b [Homo sapiens]          65   4e-11
gi|24497536 homeobox C13 [Homo sapiens]                                65   4e-11
gi|188219638 paired box 3 isoform PAX3i [Homo sapiens]                 65   6e-11
gi|31563348 paired box 3 isoform PAX3g [Homo sapiens]                  65   6e-11
gi|31563346 paired box 3 isoform PAX3h [Homo sapiens]                  65   6e-11

>gi|197333837 notochord homeobox [Homo sapiens]
          Length = 251

 Score =  520 bits (1338), Expect = e-148
 Identities = 251/251 (100%), Positives = 251/251 (100%)

Query: 1   MPSPRPRGSPPPAPSGSRVRPPRSGRSPAPRSPTGPNTPRAPGRFESPFSVEAILARPDP 60
           MPSPRPRGSPPPAPSGSRVRPPRSGRSPAPRSPTGPNTPRAPGRFESPFSVEAILARPDP
Sbjct: 1   MPSPRPRGSPPPAPSGSRVRPPRSGRSPAPRSPTGPNTPRAPGRFESPFSVEAILARPDP 60

Query: 61  CAPAASQPSGSACVHPAFWTAASLCATGGLPWACPTSWLPAYLSVGFYPVPGPRVAPVCG 120
           CAPAASQPSGSACVHPAFWTAASLCATGGLPWACPTSWLPAYLSVGFYPVPGPRVAPVCG
Sbjct: 61  CAPAASQPSGSACVHPAFWTAASLCATGGLPWACPTSWLPAYLSVGFYPVPGPRVAPVCG 120

Query: 121 LLGFGVTGLELAHCSGLWAFPDWAPTEDLQDTERQQKRVRTMFNLEQLEELEKVFAKQHN 180
           LLGFGVTGLELAHCSGLWAFPDWAPTEDLQDTERQQKRVRTMFNLEQLEELEKVFAKQHN
Sbjct: 121 LLGFGVTGLELAHCSGLWAFPDWAPTEDLQDTERQQKRVRTMFNLEQLEELEKVFAKQHN 180

Query: 181 LVGKKRAQLAARLKLTENQVRVWFQNRRVKYQKQQKLRAAVTSAEAASLDEPSSSSIASI 240
           LVGKKRAQLAARLKLTENQVRVWFQNRRVKYQKQQKLRAAVTSAEAASLDEPSSSSIASI
Sbjct: 181 LVGKKRAQLAARLKLTENQVRVWFQNRRVKYQKQQKLRAAVTSAEAASLDEPSSSSIASI 240

Query: 241 QSDDAESGVDG 251
           QSDDAESGVDG
Sbjct: 241 QSDDAESGVDG 251


>gi|12707580 paired-like homeobox 2b [Homo sapiens]
          Length = 314

 Score = 76.3 bits (186), Expect = 2e-14
 Identities = 40/95 (42%), Positives = 60/95 (63%)

Query: 153 ERQQKRVRTMFNLEQLEELEKVFAKQHNLVGKKRAQLAARLKLTENQVRVWFQNRRVKYQ 212
           +R+Q+R+RT F   QL+ELE+VFA+ H      R +LA ++ LTE +V+VWFQNRR K++
Sbjct: 95  KRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFR 154

Query: 213 KQQKLRAAVTSAEAASLDEPSSSSIASIQSDDAES 247
           KQ++  AA  +A         S S    +S +A+S
Sbjct: 155 KQERAAAAAAAAAKNGSSGKKSDSSRDDESKEAKS 189


>gi|111120318 NK6 transcription factor related, locus 1 [Homo
           sapiens]
          Length = 367

 Score = 75.9 bits (185), Expect = 3e-14
 Identities = 80/294 (27%), Positives = 115/294 (39%), Gaps = 50/294 (17%)

Query: 1   MPSPRPRGSPPPAPSGSRVRPPRSGRSPAPRSPTGPNTPR-----APGRFES-------- 47
           M +P    + PP P+G       S  S +P  P G + P      A G   S        
Sbjct: 31  MKTPLYPAAYPPLPAGPPSSSSSSSSSSSPSPPLGTHNPGGLKPPATGGLSSLGSPPQQL 90

Query: 48  ----PFSVEAILARPD-PCAPAASQPSGS-------------ACVHPAFWTAASLCATGG 89
               P  +  IL+RP  P A  A+ PS S             A    A   AA+  A   
Sbjct: 91  SAATPHGINDILSRPSMPVASGAALPSASPSGSSSSSSSSASASSASAAAAAAAAAAAAA 150

Query: 90  LPWACPTSWLPAYLSVGFYPVP-----GPRVAPVCGLLGFGVTGLELAHCS-----GLWA 139
              A   + LP + S+   P P      P  A V  +  +     EL   +     G+  
Sbjct: 151 SSPAGLLAGLPRFSSLSPPPPPPGLYFSPSAAAVAAVGRYPKPLAELPGRTPIFWPGVMQ 210

Query: 140 FPDWAPTE---------DLQDTERQQKRVRTMFNLEQLEELEKVFAKQHNLVGKKRAQLA 190
            P W              L D + ++K  R  F+ +Q+  LEK F +   L G +RA+LA
Sbjct: 211 SPPWRDARLACTPHQGSILLDKDGKRKHTRPTFSGQQIFALEKTFEQTKYLAGPERARLA 270

Query: 191 ARLKLTENQVRVWFQNRRVKYQKQQKLRAAVTSAEAASLDEPSSSSIASIQSDD 244
             L +TE+QV+VWFQNRR K++K+     A    +  S  E    +  + + DD
Sbjct: 271 YSLGMTESQVKVWFQNRRTKWRKKHAAEMATAKKKQDSETERLKGASENEEEDD 324


>gi|94536800 empty spiracles homolog 1 [Homo sapiens]
          Length = 290

 Score = 73.6 bits (179), Expect = 2e-13
 Identities = 34/62 (54%), Positives = 45/62 (72%)

Query: 154 RQQKRVRTMFNLEQLEELEKVFAKQHNLVGKKRAQLAARLKLTENQVRVWFQNRRVKYQK 213
           R+ KR+RT F+  QL  LE+ F K H +VG +R QLA  L L+E QV+VWFQNRR KY++
Sbjct: 190 RKPKRIRTAFSPSQLLRLERAFEKNHYVVGAERKQLAGSLSLSETQVKVWFQNRRTKYKR 249

Query: 214 QQ 215
           Q+
Sbjct: 250 QK 251


>gi|46249382 paired-like homeobox 2a [Homo sapiens]
          Length = 284

 Score = 73.2 bits (178), Expect = 2e-13
 Identities = 39/94 (41%), Positives = 59/94 (62%), Gaps = 2/94 (2%)

Query: 153 ERQQKRVRTMFNLEQLEELEKVFAKQHNLVGKKRAQLAARLKLTENQVRVWFQNRRVKYQ 212
           +R+Q+R+RT F   QL+ELE+VFA+ H      R +LA ++ LTE +V+VWFQNRR K++
Sbjct: 87  KRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFR 146

Query: 213 KQQKLRAAVTSAEAASLDEPSSSSIASIQSDDAE 246
           KQ+  RAA     A +       +  S + DD++
Sbjct: 147 KQE--RAASAKGAAGAAGAKKGEARCSSEDDDSK 178


>gi|113204604 aristaless-like homeobox 3 [Homo sapiens]
          Length = 343

 Score = 72.8 bits (177), Expect = 3e-13
 Identities = 75/227 (33%), Positives = 95/227 (41%), Gaps = 38/227 (16%)

Query: 2   PSPRP---RGSPPPAPSGSRVRPPRSGRSPAPRSPT-------GPNTPRAPGRFESPFSV 51
           P+P P    G  PP P G+    P    +P PR P        GP  P  P   + P   
Sbjct: 13  PAPGPYVASGDEPPGPQGTPAAAPHLHPAP-PRGPRLTRFPACGPLEPYLPEPAKPPAKY 71

Query: 52  EAILARPDPCAPAASQPSGSACVHPAFWTAASLCATGGLPWACPTSWLPAYLSVGFYPVP 111
              L  P P         G A        AAS      LP  C                 
Sbjct: 72  LQDLG-PGPALNGGHFYEGPAEAEEKTSKAASFPQ---LPLDCRG--------------- 112

Query: 112 GPRVAP--VCGLLGFGVTGLELAHCSGLWAFPDWAPTEDLQDTERQQKRVRTMFNLEQLE 169
           GPR  P  + G  G  +  L L    GL   PD   + +L   + +++R RT F+  QLE
Sbjct: 113 GPRDGPSNLQGSPGPCLASLHLPLSPGL---PD---SMELAKNKSKKRRNRTTFSTFQLE 166

Query: 170 ELEKVFAKQHNLVGKKRAQLAARLKLTENQVRVWFQNRRVKYQKQQK 216
           ELEKVF K H      R QLA R  LTE +V+VWFQNRR K++K+++
Sbjct: 167 ELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWRKRER 213


>gi|57232759 intestine-specific homeobox [Homo sapiens]
          Length = 245

 Score = 72.0 bits (175), Expect = 5e-13
 Identities = 39/96 (40%), Positives = 59/96 (61%), Gaps = 2/96 (2%)

Query: 145 PTEDLQDTERQQKRVRTMFNLEQLEELEKVFAKQHNLVGKKRAQLAARLKLTENQVRVWF 204
           P +  Q+  + ++RVRT F  EQL ELEK+F   H      R+QLAAR+ L E +V++WF
Sbjct: 71  PKDQPQEGRKSKRRVRTTFTTEQLHELEKIFHFTHYPDVHIRSQLAARINLPEARVQIWF 130

Query: 205 QNRRVKYQKQQKL--RAAVTSAEAASLDEPSSSSIA 238
           QN+R K++KQ+K+    A      AS+  P++  +A
Sbjct: 131 QNQRAKWRKQEKIGNLGAPQQLSEASVALPTNLDVA 166


>gi|14149611 empty spiracles homeobox 2 [Homo sapiens]
          Length = 252

 Score = 71.6 bits (174), Expect = 6e-13
 Identities = 34/62 (54%), Positives = 44/62 (70%)

Query: 154 RQQKRVRTMFNLEQLEELEKVFAKQHNLVGKKRAQLAARLKLTENQVRVWFQNRRVKYQK 213
           R+ KR+RT F+  QL  LE  F K H +VG +R QLA  L LTE QV+VWFQNRR K+++
Sbjct: 152 RKPKRIRTAFSPSQLLRLEHAFEKNHYVVGAERKQLAHSLSLTETQVKVWFQNRRTKFKR 211

Query: 214 QQ 215
           Q+
Sbjct: 212 QK 213


>gi|55743092 aristaless-like homeobox 4 [Homo sapiens]
          Length = 411

 Score = 70.1 bits (170), Expect = 2e-12
 Identities = 66/218 (30%), Positives = 90/218 (41%), Gaps = 38/218 (17%)

Query: 2   PSPR-PRGSPPPAPSGSRVRPPRSGRSPAPRSPTGPNTPRAPGRFESPFSVEAILARPDP 60
           P P  P+  PPP P   +       + P P+ P  P+     G  ++P         PD 
Sbjct: 92  PQPSTPQPQPPPQPQPQQ-------QQPQPQPPAQPHLYLQRGACKTP---------PDG 135

Query: 61  CAPAASQPSG-SACVHPAFWTAASLCATGGLPWACPTSWLPA-YLSVGFYPVPGPRVAPV 118
                   SG SA +    +   S      LP    T  + + YLSV    V GP+    
Sbjct: 136 SLKLQEGSSGHSAALQVPCYAKESSLGEPELPPDSDTVGMDSSYLSVKEAGVKGPQDRAS 195

Query: 119 CGLLGFGVTGLELAHCSGLWAFPDWAPTEDLQDTERQQKRVRTMFNLEQLEELEKVFAKQ 178
             L                   P      D +  + +++R RT F   QLEELEKVF K 
Sbjct: 196 SDL-------------------PSPLEKADSESNKGKKRRNRTTFTSYQLEELEKVFQKT 236

Query: 179 HNLVGKKRAQLAARLKLTENQVRVWFQNRRVKYQKQQK 216
           H      R QLA R  LTE +V+VWFQNRR K++K+++
Sbjct: 237 HYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRER 274


>gi|4502365 NK3 homeobox 2 [Homo sapiens]
          Length = 333

 Score = 68.2 bits (165), Expect = 7e-12
 Identities = 45/112 (40%), Positives = 60/112 (53%), Gaps = 7/112 (6%)

Query: 123 GFGVTGLEL-AHCSGLWAFPDWAPTEDLQDTER------QQKRVRTMFNLEQLEELEKVF 175
           G G  G  + A CSG        P    ++ E       ++KR R  F+  Q+ ELE+ F
Sbjct: 166 GVGPRGAHVSALCSGAGGGGGSGPAGVAEEEEEPAAPKPRKKRSRAAFSHAQVFELERRF 225

Query: 176 AKQHNLVGKKRAQLAARLKLTENQVRVWFQNRRVKYQKQQKLRAAVTSAEAA 227
             Q  L G +RA LAA LKLTE QV++WFQNRR K +++Q     + SA AA
Sbjct: 226 NHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKTKRRQMAADLLASAPAA 277


>gi|239754062 PREDICTED: orthopedia homeobox [Homo sapiens]
          Length = 325

 Score = 67.8 bits (164), Expect = 9e-12
 Identities = 42/101 (41%), Positives = 61/101 (60%), Gaps = 5/101 (4%)

Query: 150 QDTERQQKRVRTMFNLEQLEELEKVFAKQHNLVGKKRAQLAARLKLTENQVRVWFQNRRV 209
           Q  +++QKR RT F   QL ELE+ FAK H      R +LA R+ LTE++V+VWFQNRR 
Sbjct: 98  QQGQQKQKRHRTRFTPAQLNELERSFAKTHYPDIFMREELALRIGLTESRVQVWFQNRRA 157

Query: 210 KYQKQQK----LRAAVTSAEAASLDE-PSSSSIASIQSDDA 245
           K++K++K     RA  T      L + PS+++ A+    D+
Sbjct: 158 KWKKRKKTTNVFRAPGTLLPTPGLPQFPSAAAAAAAAMGDS 198


>gi|24497589 aristaless related homeobox [Homo sapiens]
          Length = 562

 Score = 67.8 bits (164), Expect = 9e-12
 Identities = 35/67 (52%), Positives = 46/67 (68%)

Query: 153 ERQQKRVRTMFNLEQLEELEKVFAKQHNLVGKKRAQLAARLKLTENQVRVWFQNRRVKYQ 212
           +R+Q+R RT F   QLEELE+ F K H      R +LA RL LTE +V+VWFQNRR K++
Sbjct: 325 KRKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWR 384

Query: 213 KQQKLRA 219
           K++K  A
Sbjct: 385 KREKAGA 391


>gi|14149760 orthopedia homeobox [Homo sapiens]
          Length = 325

 Score = 67.8 bits (164), Expect = 9e-12
 Identities = 42/101 (41%), Positives = 61/101 (60%), Gaps = 5/101 (4%)

Query: 150 QDTERQQKRVRTMFNLEQLEELEKVFAKQHNLVGKKRAQLAARLKLTENQVRVWFQNRRV 209
           Q  +++QKR RT F   QL ELE+ FAK H      R +LA R+ LTE++V+VWFQNRR 
Sbjct: 98  QQGQQKQKRHRTRFTPAQLNELERSFAKTHYPDIFMREELALRIGLTESRVQVWFQNRRA 157

Query: 210 KYQKQQK----LRAAVTSAEAASLDE-PSSSSIASIQSDDA 245
           K++K++K     RA  T      L + PS+++ A+    D+
Sbjct: 158 KWKKRKKTTNVFRAPGTLLPTPGLPQFPSAAAAAAAAMGDS 198


>gi|24497515 homeobox A3 isoform b [Homo sapiens]
          Length = 285

 Score = 67.4 bits (163), Expect = 1e-11
 Identities = 36/85 (42%), Positives = 50/85 (58%), Gaps = 3/85 (3%)

Query: 153 ERQQKRVRTMFNLEQLEELEKVFAKQHNLVGKKRAQLAARLKLTENQVRVWFQNRRVKYQ 212
           +   KR RT +   QL ELEK F     L   +R ++A  L LTE Q+++WFQNRR+KY+
Sbjct: 30  QASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYK 89

Query: 213 KQQKLRAAVTSAEAASLDEPSSSSI 237
           K QK +  +TS+   S   PS S +
Sbjct: 90  KDQKGKGMLTSSGGQS---PSRSPV 111


>gi|24497513 homeobox A3 isoform a [Homo sapiens]
          Length = 443

 Score = 67.4 bits (163), Expect = 1e-11
 Identities = 36/85 (42%), Positives = 50/85 (58%), Gaps = 3/85 (3%)

Query: 153 ERQQKRVRTMFNLEQLEELEKVFAKQHNLVGKKRAQLAARLKLTENQVRVWFQNRRVKYQ 212
           +   KR RT +   QL ELEK F     L   +R ++A  L LTE Q+++WFQNRR+KY+
Sbjct: 188 QASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYK 247

Query: 213 KQQKLRAAVTSAEAASLDEPSSSSI 237
           K QK +  +TS+   S   PS S +
Sbjct: 248 KDQKGKGMLTSSGGQS---PSRSPV 269



 Score = 30.8 bits (68), Expect = 1.2
 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 10/81 (12%)

Query: 2   PSPRPR--GSPPPAPSGSRVRPPRSGRSP--APRSPTGPNTPRAPGRFESPFSVEAIL-- 55
           P+P+P      PPAP+ +   PP S   P  A  +PT  N  ++P    SP   + I   
Sbjct: 100 PAPQPPQPAPQPPAPTPAAPPPPSSASPPQNASNNPTPANAAKSP-LLNSPTVAKQIFPW 158

Query: 56  ---ARPDPCAPAASQPSGSAC 73
              +R +     +S  SG +C
Sbjct: 159 MKESRQNTKQKTSSSSSGESC 179


>gi|13562112 homeobox A3 isoform a [Homo sapiens]
          Length = 443

 Score = 67.4 bits (163), Expect = 1e-11
 Identities = 36/85 (42%), Positives = 50/85 (58%), Gaps = 3/85 (3%)

Query: 153 ERQQKRVRTMFNLEQLEELEKVFAKQHNLVGKKRAQLAARLKLTENQVRVWFQNRRVKYQ 212
           +   KR RT +   QL ELEK F     L   +R ++A  L LTE Q+++WFQNRR+KY+
Sbjct: 188 QASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYK 247

Query: 213 KQQKLRAAVTSAEAASLDEPSSSSI 237
           K QK +  +TS+   S   PS S +
Sbjct: 248 KDQKGKGMLTSSGGQS---PSRSPV 269



 Score = 30.8 bits (68), Expect = 1.2
 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 10/81 (12%)

Query: 2   PSPRPR--GSPPPAPSGSRVRPPRSGRSP--APRSPTGPNTPRAPGRFESPFSVEAIL-- 55
           P+P+P      PPAP+ +   PP S   P  A  +PT  N  ++P    SP   + I   
Sbjct: 100 PAPQPPQPAPQPPAPTPAAPPPPSSASPPQNASNNPTPANAAKSP-LLNSPTVAKQIFPW 158

Query: 56  ---ARPDPCAPAASQPSGSAC 73
              +R +     +S  SG +C
Sbjct: 159 MKESRQNTKQKTSSSSSGESC 179


>gi|19923391 homeobox D3 [Homo sapiens]
          Length = 432

 Score = 67.0 bits (162), Expect = 1e-11
 Identities = 35/82 (42%), Positives = 47/82 (57%)

Query: 147 EDLQDTERQQKRVRTMFNLEQLEELEKVFAKQHNLVGKKRAQLAARLKLTENQVRVWFQN 206
           ED        KRVRT +   QL ELEK F     L   +R ++A  L LTE Q+++WFQN
Sbjct: 185 EDKSPPGPASKRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQN 244

Query: 207 RRVKYQKQQKLRAAVTSAEAAS 228
           RR+KY+K QK +  + S  + S
Sbjct: 245 RRMKYKKDQKAKGILHSPASQS 266


>gi|5902024 paired mesoderm homeobox 1 isoform pmx-1a [Homo sapiens]
          Length = 217

 Score = 67.0 bits (162), Expect = 1e-11
 Identities = 43/123 (34%), Positives = 68/123 (55%), Gaps = 10/123 (8%)

Query: 125 GVTGLELAHCSGLWAFPDWAPTEDL------QDTERQQKRVRTMFNLEQLEELEKVFAKQ 178
           G  G  L    GL +  D  P +D       +  +R+Q+R RT FN  QL+ LE+VF + 
Sbjct: 58  GEAGRSLLESPGLTSGSD-TPQQDNDQLNSEEKKKRKQRRNRTTFNSSQLQALERVFERT 116

Query: 179 HNLVGKKRAQLAARLKLTENQVRVWFQNRRVKYQKQQKLRAAVTSAEAASLDEPSSSSIA 238
           H      R  LA R+ LTE +V+VWFQNRR K+++ ++   A+ + + ASL +  S  + 
Sbjct: 117 HYPDAFVREDLARRVNLTEARVQVWFQNRRAKFRRNER---AMLANKNASLLKSYSGDVT 173

Query: 239 SIQ 241
           +++
Sbjct: 174 AVE 176


>gi|12707577 paired mesoderm homeobox 1 isoform pmx-1b [Homo
           sapiens]
          Length = 245

 Score = 67.0 bits (162), Expect = 1e-11
 Identities = 43/123 (34%), Positives = 68/123 (55%), Gaps = 10/123 (8%)

Query: 125 GVTGLELAHCSGLWAFPDWAPTEDL------QDTERQQKRVRTMFNLEQLEELEKVFAKQ 178
           G  G  L    GL +  D  P +D       +  +R+Q+R RT FN  QL+ LE+VF + 
Sbjct: 58  GEAGRSLLESPGLTSGSD-TPQQDNDQLNSEEKKKRKQRRNRTTFNSSQLQALERVFERT 116

Query: 179 HNLVGKKRAQLAARLKLTENQVRVWFQNRRVKYQKQQKLRAAVTSAEAASLDEPSSSSIA 238
           H      R  LA R+ LTE +V+VWFQNRR K+++ ++   A+ + + ASL +  S  + 
Sbjct: 117 HYPDAFVREDLARRVNLTEARVQVWFQNRRAKFRRNER---AMLANKNASLLKSYSGDVT 173

Query: 239 SIQ 241
           +++
Sbjct: 174 AVE 176


>gi|4505619 paired box 7 isoform 1 [Homo sapiens]
          Length = 520

 Score = 66.2 bits (160), Expect = 3e-11
 Identities = 33/62 (53%), Positives = 43/62 (69%)

Query: 153 ERQQKRVRTMFNLEQLEELEKVFAKQHNLVGKKRAQLAARLKLTENQVRVWFQNRRVKYQ 212
           +R+Q+R RT F  EQLEELEK F + H      R +LA R KLTE +V+VWF NRR +++
Sbjct: 214 KRKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWR 273

Query: 213 KQ 214
           KQ
Sbjct: 274 KQ 275


>gi|7524359 paired box 7 isoform 2 [Homo sapiens]
          Length = 518

 Score = 66.2 bits (160), Expect = 3e-11
 Identities = 33/62 (53%), Positives = 43/62 (69%)

Query: 153 ERQQKRVRTMFNLEQLEELEKVFAKQHNLVGKKRAQLAARLKLTENQVRVWFQNRRVKYQ 212
           +R+Q+R RT F  EQLEELEK F + H      R +LA R KLTE +V+VWF NRR +++
Sbjct: 212 KRKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWR 271

Query: 213 KQ 214
           KQ
Sbjct: 272 KQ 273


>gi|207029223 paired box 7 isoform 3 [Homo sapiens]
          Length = 505

 Score = 66.2 bits (160), Expect = 3e-11
 Identities = 33/62 (53%), Positives = 43/62 (69%)

Query: 153 ERQQKRVRTMFNLEQLEELEKVFAKQHNLVGKKRAQLAARLKLTENQVRVWFQNRRVKYQ 212
           +R+Q+R RT F  EQLEELEK F + H      R +LA R KLTE +V+VWF NRR +++
Sbjct: 214 KRKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWR 273

Query: 213 KQ 214
           KQ
Sbjct: 274 KQ 275


>gi|7110735 ventral anterior homeobox 2 [Homo sapiens]
          Length = 290

 Score = 65.9 bits (159), Expect = 3e-11
 Identities = 35/74 (47%), Positives = 49/74 (66%), Gaps = 4/74 (5%)

Query: 157 KRVRTMFNLEQLEELEKVFAKQHNLVGKKRAQLAARLKLTENQVRVWFQNRRVKYQKQQ- 215
           KR RT F  EQL  LE  F +   +VG++R +LA +L L+E QV+VWFQNRR K +K Q 
Sbjct: 103 KRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQVKVWFQNRRTKQKKDQS 162

Query: 216 ---KLRAAVTSAEA 226
              + RA+ +++EA
Sbjct: 163 RDLEKRASSSASEA 176


>gi|162951873 ventral anterior homeobox 1 isoform a [Homo sapiens]
          Length = 334

 Score = 65.9 bits (159), Expect = 3e-11
 Identities = 35/74 (47%), Positives = 47/74 (63%), Gaps = 4/74 (5%)

Query: 157 KRVRTMFNLEQLEELEKVFAKQHNLVGKKRAQLAARLKLTENQVRVWFQNRRVKYQKQQ- 215
           KR RT F  EQL  LE  F +   +VG++R +LA +L L+E QV+VWFQNRR K +K Q 
Sbjct: 101 KRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQVKVWFQNRRTKQKKDQG 160

Query: 216 ---KLRAAVTSAEA 226
              +LR+ V+   A
Sbjct: 161 KDSELRSVVSETAA 174


>gi|89145413 short stature homeobox 2 isoform a [Homo sapiens]
          Length = 331

 Score = 65.5 bits (158), Expect = 4e-11
 Identities = 34/69 (49%), Positives = 47/69 (68%)

Query: 147 EDLQDTERQQKRVRTMFNLEQLEELEKVFAKQHNLVGKKRAQLAARLKLTENQVRVWFQN 206
           ED   T+ +Q+R RT F LEQL ELE++F + H      R +L+ RL L+E +V+VWFQN
Sbjct: 131 EDEGQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQN 190

Query: 207 RRVKYQKQQ 215
           RR K +KQ+
Sbjct: 191 RRAKCRKQE 199


>gi|87044888 short stature homeobox 2 isoform b [Homo sapiens]
          Length = 190

 Score = 65.5 bits (158), Expect = 4e-11
 Identities = 34/69 (49%), Positives = 47/69 (68%)

Query: 147 EDLQDTERQQKRVRTMFNLEQLEELEKVFAKQHNLVGKKRAQLAARLKLTENQVRVWFQN 206
           ED   T+ +Q+R RT F LEQL ELE++F + H      R +L+ RL L+E +V+VWFQN
Sbjct: 2   EDEGQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQN 61

Query: 207 RRVKYQKQQ 215
           RR K +KQ+
Sbjct: 62  RRAKCRKQE 70


>gi|24497536 homeobox C13 [Homo sapiens]
          Length = 330

 Score = 65.5 bits (158), Expect = 4e-11
 Identities = 66/245 (26%), Positives = 101/245 (41%), Gaps = 36/245 (14%)

Query: 4   PRPRGSPPPAPSGSR-------VRPPRSGRSPAPRSPTGPNTPRAPGRFESPFS------ 50
           P P    PPAP G+        +  P + R  AP  P  P +  A   +  PF       
Sbjct: 74  PHPVLGRPPAPLGAPQGAVYTDIPAPEAARQCAP-PPAPPTSSSATLGYGYPFGGSYYGC 132

Query: 51  --VEAILARPDPCA--PAASQPSGSACVHPAFWTAASLCATGGLPWACPTSWLPAYLSVG 106
                +  +  PCA  P    P  S  +     ++ +        +A     +P YL V 
Sbjct: 133 RLSHNVNLQQKPCAYHPGDKYPEPSGALPGDDLSSRAKEFAFYPSFASSYQAMPGYLDVS 192

Query: 107 FYPV----PGPR---VAPVCGLLGFGVTG---------LELAHCSGLWA--FPDWAPTED 148
             P     P PR   + PV G   + ++           E +  + LW   FPD  P + 
Sbjct: 193 VVPGISGHPEPRHDALIPVEGYQHWALSNGWDSQVYCSKEQSQSAHLWKSPFPDVVPLQP 252

Query: 149 LQDTERQQKRVRTMFNLEQLEELEKVFAKQHNLVGKKRAQLAARLKLTENQVRVWFQNRR 208
              + R+ ++ R  +   QL+ELEK +A    +  +KR +++A   L+E QV +WFQNRR
Sbjct: 253 EVSSYRRGRKKRVPYTKVQLKELEKEYAASKFITKEKRRRISATTNLSERQVTIWFQNRR 312

Query: 209 VKYQK 213
           VK +K
Sbjct: 313 VKEKK 317


>gi|188219638 paired box 3 isoform PAX3i [Homo sapiens]
          Length = 483

 Score = 65.1 bits (157), Expect = 6e-11
 Identities = 32/62 (51%), Positives = 43/62 (69%)

Query: 153 ERQQKRVRTMFNLEQLEELEKVFAKQHNLVGKKRAQLAARLKLTENQVRVWFQNRRVKYQ 212
           +R+Q+R RT F  EQLEELE+ F + H      R +LA R KLTE +V+VWF NRR +++
Sbjct: 215 KRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWR 274

Query: 213 KQ 214
           KQ
Sbjct: 275 KQ 276


>gi|31563348 paired box 3 isoform PAX3g [Homo sapiens]
          Length = 403

 Score = 65.1 bits (157), Expect = 6e-11
 Identities = 32/62 (51%), Positives = 43/62 (69%)

Query: 153 ERQQKRVRTMFNLEQLEELEKVFAKQHNLVGKKRAQLAARLKLTENQVRVWFQNRRVKYQ 212
           +R+Q+R RT F  EQLEELE+ F + H      R +LA R KLTE +V+VWF NRR +++
Sbjct: 216 KRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWR 275

Query: 213 KQ 214
           KQ
Sbjct: 276 KQ 277


>gi|31563346 paired box 3 isoform PAX3h [Homo sapiens]
          Length = 407

 Score = 65.1 bits (157), Expect = 6e-11
 Identities = 32/62 (51%), Positives = 43/62 (69%)

Query: 153 ERQQKRVRTMFNLEQLEELEKVFAKQHNLVGKKRAQLAARLKLTENQVRVWFQNRRVKYQ 212
           +R+Q+R RT F  EQLEELE+ F + H      R +LA R KLTE +V+VWF NRR +++
Sbjct: 216 KRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWR 275

Query: 213 KQ 214
           KQ
Sbjct: 276 KQ 277


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.131    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,479,927
Number of Sequences: 37866
Number of extensions: 796135
Number of successful extensions: 13044
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 882
Number of HSP's that attempted gapping in prelim test: 7919
Number of HSP's gapped (non-prelim): 4775
length of query: 251
length of database: 18,247,518
effective HSP length: 100
effective length of query: 151
effective length of database: 14,460,918
effective search space: 2183598618
effective search space used: 2183598618
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.