Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 196049384

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|196049384 family with sequence similarity 58, member A
isoform 2 [Homo sapiens]
         (228 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|196049384 family with sequence similarity 58, member A isofor...   473   e-134
gi|196049382 family with sequence similarity 58, member A isofor...   461   e-130
gi|157502165 family with sequence similarity 58 member B [Homo s...   370   e-103
gi|150417989 cyclin K isoform 1 [Homo sapiens]                         96   2e-20
gi|38176158 cyclin K isoform 2 [Homo sapiens]                          96   2e-20
gi|9945320 cyclin L1 [Homo sapiens]                                    94   7e-20
gi|88758580 cyclin L2 isoform A [Homo sapiens]                         93   2e-19
gi|17978469 cyclin T2 isoform b [Homo sapiens]                         75   4e-14
gi|4502629 cyclin T2 isoform a [Homo sapiens]                          75   4e-14
gi|221554516 cyclin L2 isoform C [Homo sapiens]                        73   2e-13
gi|221554518 cyclin L2 isoform D [Homo sapiens]                        73   2e-13
gi|88758578 cyclin L2 isoform B [Homo sapiens]                         73   2e-13
gi|17978466 cyclin T1 [Homo sapiens]                                   63   2e-10
gi|61676091 cyclin C isoform a [Homo sapiens]                          63   2e-10
gi|4502623 cyclin H [Homo sapiens]                                     44   1e-04
gi|61676093 cyclin C isoform b [Homo sapiens]                          42   6e-04
gi|91208437 GEM interacting protein [Homo sapiens]                     31   0.77 
gi|239757942 PREDICTED: hypothetical protein XP_002346387 [Homo ...    30   1.7  
gi|5803133 RAB32, member RAS oncogene family [Homo sapiens]            29   2.9  
gi|50843837 hypothetical protein LOC55701 [Homo sapiens]               29   2.9  
gi|110624765 POU domain, class 3, transcription factor 1 [Homo s...    29   3.8  
gi|169171269 PREDICTED: similar to forkhead box L2 [Homo sapiens]      28   6.5  
gi|169172132 PREDICTED: similar to forkhead box L2 [Homo sapiens]      28   6.5  
gi|239743053 PREDICTED: hypothetical protein XP_002342748 [Homo ...    28   6.5  
gi|113419423 PREDICTED: similar to forkhead box L2 [Homo sapiens]      28   6.5  
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]          28   6.5  
gi|115392133 collagen, type XXIV, alpha 1 [Homo sapiens]               28   6.5  
gi|6912582 penta-EF-hand domain containing 1 [Homo sapiens]            28   6.5  
gi|38505159 transcription factor-like 5 protein [Homo sapiens]         28   6.5  
gi|116517292 cut-like 2 [Homo sapiens]                                 28   8.5  

>gi|196049384 family with sequence similarity 58, member A isoform 2
           [Homo sapiens]
          Length = 228

 Score =  473 bits (1218), Expect = e-134
 Identities = 228/228 (100%), Positives = 228/228 (100%)

Query: 1   MEAPEGGGGGPAARGPEGQPAPEARVHFRVARFIMEAGVKLGMRSIPIATACTIYHKFFC 60
           MEAPEGGGGGPAARGPEGQPAPEARVHFRVARFIMEAGVKLGMRSIPIATACTIYHKFFC
Sbjct: 1   MEAPEGGGGGPAARGPEGQPAPEARVHFRVARFIMEAGVKLGMRSIPIATACTIYHKFFC 60

Query: 61  ETNLDAYDPYLIAMSSIYLAGKVEEQHLRTRDIINVSNRYFNPSGEPLELDSRFWELRDS 120
           ETNLDAYDPYLIAMSSIYLAGKVEEQHLRTRDIINVSNRYFNPSGEPLELDSRFWELRDS
Sbjct: 61  ETNLDAYDPYLIAMSSIYLAGKVEEQHLRTRDIINVSNRYFNPSGEPLELDSRFWELRDS 120

Query: 121 IVQCELLMLRVLRFQVSFQHPHKYLLHYLVSLQNWLNRHSWQRTPVAVTAWALLRDSYHG 180
           IVQCELLMLRVLRFQVSFQHPHKYLLHYLVSLQNWLNRHSWQRTPVAVTAWALLRDSYHG
Sbjct: 121 IVQCELLMLRVLRFQVSFQHPHKYLLHYLVSLQNWLNRHSWQRTPVAVTAWALLRDSYHG 180

Query: 181 ALCLRFQAQHIAVAVLYLALQVYGVEVPAEVEAEKPWWQIYTMDTEIP 228
           ALCLRFQAQHIAVAVLYLALQVYGVEVPAEVEAEKPWWQIYTMDTEIP
Sbjct: 181 ALCLRFQAQHIAVAVLYLALQVYGVEVPAEVEAEKPWWQIYTMDTEIP 228


>gi|196049382 family with sequence similarity 58, member A isoform 1
           [Homo sapiens]
          Length = 248

 Score =  461 bits (1187), Expect = e-130
 Identities = 228/248 (91%), Positives = 228/248 (91%), Gaps = 20/248 (8%)

Query: 1   MEAPEGGGGGPAARGPEGQPAPEARVHFRVARFIMEAGVKLGMRSIPIATACTIYHKFFC 60
           MEAPEGGGGGPAARGPEGQPAPEARVHFRVARFIMEAGVKLGMRSIPIATACTIYHKFFC
Sbjct: 1   MEAPEGGGGGPAARGPEGQPAPEARVHFRVARFIMEAGVKLGMRSIPIATACTIYHKFFC 60

Query: 61  ETNLDAYDPYLIAMSSIYLAGKVEEQHLRTRDIINVSNRYFNPSGEPLELDSRFWELRDS 120
           ETNLDAYDPYLIAMSSIYLAGKVEEQHLRTRDIINVSNRYFNPSGEPLELDSRFWELRDS
Sbjct: 61  ETNLDAYDPYLIAMSSIYLAGKVEEQHLRTRDIINVSNRYFNPSGEPLELDSRFWELRDS 120

Query: 121 IVQCELLMLRVLRFQVSFQHPHKYLLHYLVSLQNWLNRHSWQRTPVAVTAWALLRDSYHG 180
           IVQCELLMLRVLRFQVSFQHPHKYLLHYLVSLQNWLNRHSWQRTPVAVTAWALLRDSYHG
Sbjct: 121 IVQCELLMLRVLRFQVSFQHPHKYLLHYLVSLQNWLNRHSWQRTPVAVTAWALLRDSYHG 180

Query: 181 ALCLRFQAQHIAVAVLYLALQVYGVEVPAEVEAEKPWW--------------------QI 220
           ALCLRFQAQHIAVAVLYLALQVYGVEVPAEVEAEKPWW                    QI
Sbjct: 181 ALCLRFQAQHIAVAVLYLALQVYGVEVPAEVEAEKPWWQVFNDDLTKPIIDNIVSDLIQI 240

Query: 221 YTMDTEIP 228
           YTMDTEIP
Sbjct: 241 YTMDTEIP 248


>gi|157502165 family with sequence similarity 58 member B [Homo
           sapiens]
          Length = 252

 Score =  370 bits (951), Expect = e-103
 Identities = 192/247 (77%), Positives = 199/247 (80%), Gaps = 20/247 (8%)

Query: 2   EAPEGGGGGPAARGPEGQPAPEARVHFRVARFIMEAGVKLGMRSIPIATACTIYHKFFCE 61
           +A E  G        EG  AP ARVHFRVARFIMEAGVKLGM+SIPIATACTIY KFFCE
Sbjct: 6   DAGEEAGEDAGEDAREGAAAPAARVHFRVARFIMEAGVKLGMQSIPIATACTIYPKFFCE 65

Query: 62  TNLDAYDPYLIAMSSIYLAGKVEEQHLRTRDIINVSNRYFNPSGEPLELDSRFWELRDSI 121
           T LDA+DPYLIAMSSIYLAGKVEEQ L   DII+VSNRYFNPS EPL LDSR WELRDSI
Sbjct: 66  TILDAFDPYLIAMSSIYLAGKVEEQPLWAHDIISVSNRYFNPSSEPLGLDSRLWELRDSI 125

Query: 122 VQCELLMLRVLRFQVSFQHPHKYLLHYLVSLQNWLNRHSWQRTPVAVTAWALLRDSYHGA 181
           VQ ELLMLRVLRFQVSFQHPHKYLL+YLVSL+NWLN HSWQRTPVAVTAWALLRDSYHG 
Sbjct: 126 VQRELLMLRVLRFQVSFQHPHKYLLYYLVSLKNWLNCHSWQRTPVAVTAWALLRDSYHGG 185

Query: 182 LCLRFQAQHIAVAVLYLALQVYGVEVPAEVEAEKPWW--------------------QIY 221
           LCLRFQAQHIAV VLYLALQVYGVEVPAEVEAEK WW                    QIY
Sbjct: 186 LCLRFQAQHIAVVVLYLALQVYGVEVPAEVEAEKLWWQAFSDDLTKPIIDTIVSDLIQIY 245

Query: 222 TMDTEIP 228
           T+DTEIP
Sbjct: 246 TIDTEIP 252


>gi|150417989 cyclin K isoform 1 [Homo sapiens]
          Length = 580

 Score = 96.3 bits (238), Expect = 2e-20
 Identities = 60/216 (27%), Positives = 107/216 (49%), Gaps = 22/216 (10%)

Query: 20  PAPEARVHFRVARFIMEAGVKLGMRSIPIATACTIYHKFFCETNLDAYDPYLIAMSSIYL 79
           PA EAR     ARFI + G +LG+    +AT    +H+F+   +   +  Y+     ++L
Sbjct: 43  PATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFL 102

Query: 80  AGKVEEQHLRTRDIINVSNRYFNPSGEPLELDSRFWEL----RDSIVQCELLMLRVLRFQ 135
           AGKVEE   + +DII  +    N        D +F +     ++ ++  E ++L+ ++F 
Sbjct: 103 AGKVEETPKKCKDIIKTARSLLN--------DVQFGQFGDDPKEEVMVLERILLQTIKFD 154

Query: 136 VSFQHPHKYLLHYLVSLQNWLNRHSWQRTPVAVTAWALLRDSYHGALCLRFQAQHIAVAV 195
           +  +HP+++LL Y   L+   N+       +   AW  + DS    L L+++ + IAVAV
Sbjct: 155 LQVEHPYQFLLKYAKQLKGDKNKIQ----KLVQMAWTFVNDSLCTTLSLQWEPEIIAVAV 210

Query: 196 LYLALQVYGVEVPAEVEAEKP----WWQIYTMDTEI 227
           +YLA ++   E+  +    KP    WW+ +  D  +
Sbjct: 211 MYLAGRLCKFEI--QEWTSKPMYRRWWEQFVQDVPV 244


>gi|38176158 cyclin K isoform 2 [Homo sapiens]
          Length = 354

 Score = 96.3 bits (238), Expect = 2e-20
 Identities = 60/216 (27%), Positives = 107/216 (49%), Gaps = 22/216 (10%)

Query: 20  PAPEARVHFRVARFIMEAGVKLGMRSIPIATACTIYHKFFCETNLDAYDPYLIAMSSIYL 79
           PA EAR     ARFI + G +LG+    +AT    +H+F+   +   +  Y+     ++L
Sbjct: 43  PATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFL 102

Query: 80  AGKVEEQHLRTRDIINVSNRYFNPSGEPLELDSRFWEL----RDSIVQCELLMLRVLRFQ 135
           AGKVEE   + +DII  +    N        D +F +     ++ ++  E ++L+ ++F 
Sbjct: 103 AGKVEETPKKCKDIIKTARSLLN--------DVQFGQFGDDPKEEVMVLERILLQTIKFD 154

Query: 136 VSFQHPHKYLLHYLVSLQNWLNRHSWQRTPVAVTAWALLRDSYHGALCLRFQAQHIAVAV 195
           +  +HP+++LL Y   L+   N+       +   AW  + DS    L L+++ + IAVAV
Sbjct: 155 LQVEHPYQFLLKYAKQLKGDKNKIQ----KLVQMAWTFVNDSLCTTLSLQWEPEIIAVAV 210

Query: 196 LYLALQVYGVEVPAEVEAEKP----WWQIYTMDTEI 227
           +YLA ++   E+  +    KP    WW+ +  D  +
Sbjct: 211 MYLAGRLCKFEI--QEWTSKPMYRRWWEQFVQDVPV 244


>gi|9945320 cyclin L1 [Homo sapiens]
          Length = 526

 Score = 94.4 bits (233), Expect = 7e-20
 Identities = 60/197 (30%), Positives = 100/197 (50%), Gaps = 15/197 (7%)

Query: 34  IMEAGVKLGMRSIPIATACTIYHKFFCETNLDAYDPYLIAMSSIYLAGKVEEQHLRTRDI 93
           I  AG+ L +  + +AT   ++H+FF   +   +   ++AM+ I LA K+EE   R RD+
Sbjct: 90  IQAAGILLRLPQVAMATGQVLFHRFFYSKSFVKHSFEIVAMACINLASKIEEAPRRIRDV 149

Query: 94  INVSNRYFNPSGE----PLELDSRFWELRDSIVQCELLMLRVLRFQVSFQHPHKYLLHYL 149
           INV +      G+    PL LD  +   ++ +++ E  +L+ L F V  +HPHK ++ YL
Sbjct: 150 INVFHHLRQLRGKRTPSPLILDQNYINTKNQVIKAERRVLKELGFCVHVKHPHKIIVMYL 209

Query: 150 VSLQNWLNRHSWQRTPVAVTAWALLRDSYHGALCLRFQAQHIAVAVLYLALQVYGVEVPA 209
             L+   N+       +  TAW  + DS    + +RFQ + IA A +YLA +   + +P 
Sbjct: 210 QVLECERNQ------TLVQTAWNYMNDSLRTNVFVRFQPETIACACIYLAARALQIPLPT 263

Query: 210 EVEAEKPWWQIYTMDTE 226
                +P W +    TE
Sbjct: 264 -----RPHWFLLFGTTE 275


>gi|88758580 cyclin L2 isoform A [Homo sapiens]
          Length = 520

 Score = 93.2 bits (230), Expect = 2e-19
 Identities = 60/197 (30%), Positives = 101/197 (51%), Gaps = 15/197 (7%)

Query: 34  IMEAGVKLGMRSIPIATACTIYHKFFCETNLDAYDPYLIAMSSIYLAGKVEEQHLRTRDI 93
           I  AG+ L +  + +AT   ++ +FF   +   +    ++M+ ++LA K+EE   R RD+
Sbjct: 85  IQAAGILLRLPQVAMATGQVLFQRFFYTKSFVKHSMEHVSMACVHLASKIEEAPRRIRDV 144

Query: 94  INVSNRYFNPSGE----PLELDSRFWELRDSIVQCELLMLRVLRFQVSFQHPHKYLLHYL 149
           INV +R      +    PL LD  +  L++ I++ E  +L+ L F V  +HPHK ++ YL
Sbjct: 145 INVFHRLRQLRDKKKPVPLLLDQDYVNLKNQIIKAERRVLKELGFCVHVKHPHKIIVMYL 204

Query: 150 VSLQNWLNRHSWQRTPVAVTAWALLRDSYHGALCLRFQAQHIAVAVLYLALQVYGVEVPA 209
             L+   N+H  Q      T+W  + DS    + +RFQ + IA A +YLA +   + +P 
Sbjct: 205 QVLECERNQHLVQ------TSWNYMNDSLRTDVFVRFQPESIACACIYLAARTLEIPLP- 257

Query: 210 EVEAEKPWWQIYTMDTE 226
                +P W +    TE
Sbjct: 258 ----NRPHWFLLFGATE 270


>gi|17978469 cyclin T2 isoform b [Homo sapiens]
          Length = 730

 Score = 75.5 bits (184), Expect = 4e-14
 Identities = 50/195 (25%), Positives = 99/195 (50%), Gaps = 15/195 (7%)

Query: 29  RVARFIMEAGVKLGMRSIPIATACTIYHKFFCETNLDAYDPYLIAMSSIYLAGKVEEQHL 88
           + A  I E G +L +  + I TA    H+F+   +   ++  +I+ ++++LA KVEEQ  
Sbjct: 39  QAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEEQAR 98

Query: 89  RTRDIINVSNRYFNPSGEPLELDSR---FWELRDSIVQCELLMLRVLRFQVSFQHPHKYL 145
           +   +I V++   +P  EPL LD++   + +    +V  E +ML+ L F+++ +HPH  +
Sbjct: 99  KLEHVIKVAHACLHPL-EPL-LDTKCDAYLQQTQELVILETIMLQTLGFEITIEHPHTDV 156

Query: 146 LHYLVSLQNWLNRHSWQRTPVAVTAWALLRDSYH-GALCLRFQAQHIAVAVLYLALQVYG 204
           +     ++            +A T++ +  +S H    CL+++   IA   ++LA +   
Sbjct: 157 VKCTQLVR--------ASKDLAQTSYFMATNSLHLTTFCLQYKPTVIACVCIHLACKWSN 208

Query: 205 VEVPAEVEAEKPWWQ 219
            E+P   +  K WW+
Sbjct: 209 WEIPVSTDG-KHWWE 222


>gi|4502629 cyclin T2 isoform a [Homo sapiens]
          Length = 663

 Score = 75.5 bits (184), Expect = 4e-14
 Identities = 50/195 (25%), Positives = 99/195 (50%), Gaps = 15/195 (7%)

Query: 29  RVARFIMEAGVKLGMRSIPIATACTIYHKFFCETNLDAYDPYLIAMSSIYLAGKVEEQHL 88
           + A  I E G +L +  + I TA    H+F+   +   ++  +I+ ++++LA KVEEQ  
Sbjct: 39  QAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEEQAR 98

Query: 89  RTRDIINVSNRYFNPSGEPLELDSR---FWELRDSIVQCELLMLRVLRFQVSFQHPHKYL 145
           +   +I V++   +P  EPL LD++   + +    +V  E +ML+ L F+++ +HPH  +
Sbjct: 99  KLEHVIKVAHACLHPL-EPL-LDTKCDAYLQQTQELVILETIMLQTLGFEITIEHPHTDV 156

Query: 146 LHYLVSLQNWLNRHSWQRTPVAVTAWALLRDSYH-GALCLRFQAQHIAVAVLYLALQVYG 204
           +     ++            +A T++ +  +S H    CL+++   IA   ++LA +   
Sbjct: 157 VKCTQLVR--------ASKDLAQTSYFMATNSLHLTTFCLQYKPTVIACVCIHLACKWSN 208

Query: 205 VEVPAEVEAEKPWWQ 219
            E+P   +  K WW+
Sbjct: 209 WEIPVSTDG-KHWWE 222


>gi|221554516 cyclin L2 isoform C [Homo sapiens]
          Length = 236

 Score = 73.2 bits (178), Expect = 2e-13
 Identities = 47/149 (31%), Positives = 79/149 (53%), Gaps = 4/149 (2%)

Query: 34  IMEAGVKLGMRSIPIATACTIYHKFFCETNLDAYDPYLIAMSSIYLAGKVEEQHLRTRDI 93
           I  AG+ L +  + +AT   ++ +FF   +   +    ++M+ ++LA K+EE   R RD+
Sbjct: 85  IQAAGILLRLPQVAMATGQVLFQRFFYTKSFVKHSMEHVSMACVHLASKIEEAPRRIRDV 144

Query: 94  INVSNRYFNPSGE----PLELDSRFWELRDSIVQCELLMLRVLRFQVSFQHPHKYLLHYL 149
           INV +R      +    PL LD  +  L++ I++ E  +L+ L F V  +HPHK ++ YL
Sbjct: 145 INVFHRLRQLRDKKKPVPLLLDQDYVNLKNQIIKAERRVLKELGFCVHVKHPHKIIVMYL 204

Query: 150 VSLQNWLNRHSWQRTPVAVTAWALLRDSY 178
             L+   N+H  Q + VA     L  DS+
Sbjct: 205 QVLECERNQHLVQTSWVASEDPLLKWDSW 233


>gi|221554518 cyclin L2 isoform D [Homo sapiens]
          Length = 227

 Score = 72.8 bits (177), Expect = 2e-13
 Identities = 44/138 (31%), Positives = 75/138 (54%), Gaps = 4/138 (2%)

Query: 34  IMEAGVKLGMRSIPIATACTIYHKFFCETNLDAYDPYLIAMSSIYLAGKVEEQHLRTRDI 93
           I  AG+ L +  + +AT   ++ +FF   +   +    ++M+ ++LA K+EE   R RD+
Sbjct: 85  IQAAGILLRLPQVAMATGQVLFQRFFYTKSFVKHSMEHVSMACVHLASKIEEAPRRIRDV 144

Query: 94  INVSNRYFNPSGE----PLELDSRFWELRDSIVQCELLMLRVLRFQVSFQHPHKYLLHYL 149
           INV +R      +    PL LD  +  L++ I++ E  +L+ L F V  +HPHK ++ YL
Sbjct: 145 INVFHRLRQLRDKKKPVPLLLDQDYVNLKNQIIKAERRVLKELGFCVHVKHPHKIIVMYL 204

Query: 150 VSLQNWLNRHSWQRTPVA 167
             L+   N+H  Q + VA
Sbjct: 205 QVLECERNQHLVQTSWVA 222


>gi|88758578 cyclin L2 isoform B [Homo sapiens]
          Length = 226

 Score = 72.8 bits (177), Expect = 2e-13
 Identities = 44/138 (31%), Positives = 75/138 (54%), Gaps = 4/138 (2%)

Query: 34  IMEAGVKLGMRSIPIATACTIYHKFFCETNLDAYDPYLIAMSSIYLAGKVEEQHLRTRDI 93
           I  AG+ L +  + +AT   ++ +FF   +   +    ++M+ ++LA K+EE   R RD+
Sbjct: 85  IQAAGILLRLPQVAMATGQVLFQRFFYTKSFVKHSMEHVSMACVHLASKIEEAPRRIRDV 144

Query: 94  INVSNRYFNPSGE----PLELDSRFWELRDSIVQCELLMLRVLRFQVSFQHPHKYLLHYL 149
           INV +R      +    PL LD  +  L++ I++ E  +L+ L F V  +HPHK ++ YL
Sbjct: 145 INVFHRLRQLRDKKKPVPLLLDQDYVNLKNQIIKAERRVLKELGFCVHVKHPHKIIVMYL 204

Query: 150 VSLQNWLNRHSWQRTPVA 167
             L+   N+H  Q + VA
Sbjct: 205 QVLECERNQHLVQTSWVA 222


>gi|17978466 cyclin T1 [Homo sapiens]
          Length = 726

 Score = 62.8 bits (151), Expect = 2e-10
 Identities = 43/202 (21%), Positives = 91/202 (45%), Gaps = 11/202 (5%)

Query: 20  PAPEARVHFRVARFIMEAGVKLGMRSIPIATACTIYHKFFCETNLDAYDPYLIAMSSIYL 79
           P  E     + A  + + G +L +  + I TA    H+F+   +   +    +A ++++L
Sbjct: 31  PDKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTQFPGNSVAPAALFL 90

Query: 80  AGKVEEQHLRTRDIINVSNRYFNPSGE-PLELDSRFWELRDSIVQCELLMLRVLRFQVSF 138
           A KVEEQ  +   +I V++   +P    P      + +    +V  E ++L+ L F+++ 
Sbjct: 91  AAKVEEQPKKLEHVIKVAHTCLHPQESLPDTRSEAYLQQVQDLVILESIILQTLGFELTI 150

Query: 139 QHPHKYLLHYLVSLQNWLNRHSWQRTPVAVTAWALLRDSYH-GALCLRFQAQHIAVAVLY 197
            HPH +++     ++            +A T++ +  +S H     L++    +A   ++
Sbjct: 151 DHPHTHVVKCTQLVR--------ASKDLAQTSYFMATNSLHLTTFSLQYTPPVVACVCIH 202

Query: 198 LALQVYGVEVPAEVEAEKPWWQ 219
           LA +    E+P   +  K WW+
Sbjct: 203 LACKWSNWEIPVSTDG-KHWWE 223


>gi|61676091 cyclin C isoform a [Homo sapiens]
          Length = 283

 Score = 62.8 bits (151), Expect = 2e-10
 Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 8/169 (4%)

Query: 34  IMEAGVKLGMRSIPIATACTIYHKFFCETNLDAYDPYLIAMSSIYLAGKVEEQHLRTRDI 93
           I   G  L +R   IATA   + +F+   +L + DP L+A + ++LA KVEE  + +   
Sbjct: 48  IQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTR 107

Query: 94  INVSNRYFNPSGEPLELDSRFWELRDSIVQCELLMLRVLRFQVSFQHPHKYLLHYLVSLQ 153
           +  +      +         F    + I++CE  +L ++   +   HP++ LL Y+  + 
Sbjct: 108 LIAAATSVLKTRFSYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDM- 166

Query: 154 NWLNRHSWQRTPVAVTAWALLRDSYHGALCLRFQAQHIAVAVLYLALQV 202
                   Q   +   AW ++ D+Y   LCL +    IA+A L++A  V
Sbjct: 167 -------GQEDMLLPLAWRIVNDTYRTDLCLLYPPFMIALACLHVACVV 208


>gi|4502623 cyclin H [Homo sapiens]
          Length = 323

 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 26/106 (24%), Positives = 55/106 (51%), Gaps = 10/106 (9%)

Query: 48  IATACTIYHKFFCETNLDAYDPYLIAMSSIYLAGKVEEQHLRTRDIINVSNRYFNPSGEP 107
           + TAC  + +F+   ++  Y P +I ++  +LA KV+E ++ +     V N   +P G+ 
Sbjct: 80  VGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNVSSPQF--VGNLRESPLGQE 137

Query: 108 LELDSRFWELRDSIVQCELLMLRVLRFQVSFQHPHKYLLHYLVSLQ 153
             L        + I++ ELL+++ L F +   +P++    +L+ L+
Sbjct: 138 KAL--------EQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLK 175


>gi|61676093 cyclin C isoform b [Homo sapiens]
          Length = 198

 Score = 41.6 bits (96), Expect = 6e-04
 Identities = 31/131 (23%), Positives = 59/131 (45%), Gaps = 8/131 (6%)

Query: 72  IAMSSIYLAGKVEEQHLRTRDIINVSNRYFNPSGEPLELDSRFWELRDSIVQCELLMLRV 131
           +A + ++LA KVEE  + +   +  +      +         F    + I++CE  +L +
Sbjct: 1   MAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRFSYAFPKEFPYRMNHILECEFYLLEL 60

Query: 132 LRFQVSFQHPHKYLLHYLVSLQNWLNRHSWQRTPVAVTAWALLRDSYHGALCLRFQAQHI 191
           +   +   HP++ LL Y+  +         Q   +   AW ++ D+Y   LCL +    I
Sbjct: 61  MDCCLIVYHPYRPLLQYVQDMG--------QEDMLLPLAWRIVNDTYRTDLCLLYPPFMI 112

Query: 192 AVAVLYLALQV 202
           A+A L++A  V
Sbjct: 113 ALACLHVACVV 123


>gi|91208437 GEM interacting protein [Homo sapiens]
          Length = 970

 Score = 31.2 bits (69), Expect = 0.77
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 6   GGGGGPAARGPEGQPAPEARV--HFRVARFIMEAGVKLGMRSIPIATAC 52
           G G  PAA  PEG P     +  HF + +       KL   ++P AT C
Sbjct: 910 GRGPSPAAASPEGSPLRRTPLPKHFEITQETARLLSKLDSEAVPRATCC 958


>gi|239757942 PREDICTED: hypothetical protein XP_002346387 [Homo
           sapiens]
          Length = 239

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 11/20 (55%), Positives = 15/20 (75%)

Query: 6   GGGGGPAARGPEGQPAPEAR 25
           GGGGGP+  GP G+P+  +R
Sbjct: 110 GGGGGPSLPGPAGRPSGRSR 129


>gi|5803133 RAB32, member RAS oncogene family [Homo sapiens]
          Length = 225

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 15/34 (44%), Positives = 15/34 (44%)

Query: 6  GGGGGPAARGPEGQPAPEARVHFRVARFIMEAGV 39
          GGG G    G    PAPE R H      I E GV
Sbjct: 3  GGGAGDPGLGAAAAPAPETREHLFKVLVIGELGV 36


>gi|50843837 hypothetical protein LOC55701 [Homo sapiens]
          Length = 1519

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 15/44 (34%), Positives = 20/44 (45%)

Query: 6   GGGGGPAARGPEGQPAPEARVHFRVARFIMEAGVKLGMRSIPIA 49
           GGGGG  A GP G P    + + R  R      +  G  S P++
Sbjct: 358 GGGGGQGAEGPPGTPRRTGKGNRRKKRAAGRGALSRGGDSAPLS 401


>gi|110624765 POU domain, class 3, transcription factor 1 [Homo
           sapiens]
          Length = 451

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 23/109 (21%), Positives = 43/109 (39%), Gaps = 10/109 (9%)

Query: 4   PEGGGGGPAARGPEGQPAPEARVHFRVARFIMEAGVKLGMRSIPIATAC-TIYHKFFCET 62
           P  GGGG +      + AP +    + A+   +  +KLG     +  A  T+Y   F +T
Sbjct: 232 PGAGGGGSSVGEHSDEDAPSSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQT 291

Query: 63  NLDAYDPYLIAMSSIYLAGKVEEQHLRTRDIINVSNRYFNPSGEPLELD 111
            +  ++   ++  ++     +  + L   D         + SG P  LD
Sbjct: 292 TICRFEALQLSFKNMCKLKPLLNKWLEETD---------SSSGSPTNLD 331


>gi|169171269 PREDICTED: similar to forkhead box L2 [Homo sapiens]
          Length = 632

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 3   APEGGGGGPAARGPEGQPAPEARVHFRVARFIME 36
           AP+  G G   R P   PAP  + H R  +F ++
Sbjct: 164 APDSAGEGAPGREPPASPAPPGKEHPRDLKFSID 197


>gi|169172132 PREDICTED: similar to forkhead box L2 [Homo sapiens]
          Length = 528

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 3   APEGGGGGPAARGPEGQPAPEARVHFRVARFIME 36
           AP+  G G   R P   PAP  + H R  +F ++
Sbjct: 459 APDSAGEGAPGREPPASPAPPGKEHPRDLKFSID 492


>gi|239743053 PREDICTED: hypothetical protein XP_002342748 [Homo
           sapiens]
          Length = 591

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 3   APEGGGGGPAARGPEGQPAPEARVHFRVARFIME 36
           AP+  G G   R P   PAP  + H R  +F ++
Sbjct: 522 APDSAGEGAPGREPPASPAPPGKEHPRDLKFSID 555


>gi|113419423 PREDICTED: similar to forkhead box L2 [Homo sapiens]
          Length = 387

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 3   APEGGGGGPAARGPEGQPAPEARVHFRVARFIME 36
           AP+  G G   R P   PAP  + H R  +F ++
Sbjct: 226 APDSAGEGAPGREPPASPAPPGKEHPRDLKFSID 259


>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
          Length = 2944

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 11/20 (55%), Positives = 12/20 (60%)

Query: 6    GGGGGPAARGPEGQPAPEAR 25
            G  G P A+GPEG P P  R
Sbjct: 1510 GVAGRPGAKGPEGPPGPTGR 1529


>gi|115392133 collagen, type XXIV, alpha 1 [Homo sapiens]
          Length = 1714

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 4    PEGGGGGPAARGPEGQPAPEARVHFRVA-RFIMEAGVKLGMRSIPIATACTIYH 56
            P+G  G P   GP G P P  ++    A + ++E+   L M S        I H
Sbjct: 1460 PQGPRGQPGPPGPPGAPGPRKQMDINAAIQALIESNTALQMESYQNTEVTLIDH 1513


>gi|6912582 penta-EF-hand domain containing 1 [Homo sapiens]
          Length = 284

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 12/18 (66%), Positives = 12/18 (66%)

Query: 4  PEGGGGGPAARGPEGQPA 21
          P GG GGPA  GP G PA
Sbjct: 42 PGGGYGGPAPGGPYGPPA 59


>gi|38505159 transcription factor-like 5 protein [Homo sapiens]
          Length = 500

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 13/28 (46%), Positives = 15/28 (53%)

Query: 3   APEGGGGGPAARGPEGQPAPEARVHFRV 30
           A EG G   AA GP+G P   A+   RV
Sbjct: 158 AKEGAGAAAAAAGPDGAPEARAKPAVRV 185


>gi|116517292 cut-like 2 [Homo sapiens]
          Length = 1486

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 12/38 (31%), Positives = 20/38 (52%)

Query: 2   EAPEGGGGGPAARGPEGQPAPEARVHFRVARFIMEAGV 39
           E  +GGGGG A  G E +    A + F+V   +++  +
Sbjct: 534 EPADGGGGGAAGPGAEEEQLDTAEIAFQVKEQLLKHNI 571


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.324    0.138    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,344,447
Number of Sequences: 37866
Number of extensions: 409838
Number of successful extensions: 3803
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 3710
Number of HSP's gapped (non-prelim): 76
length of query: 228
length of database: 18,247,518
effective HSP length: 99
effective length of query: 129
effective length of database: 14,498,784
effective search space: 1870343136
effective search space used: 1870343136
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press