Guide to the Human Genome
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Name: ANKFN1 Sequence: fasta or formatted (763aa) NCBI GI: 114842396
Description:

ankyrin-repeat and fibronectin type III domain containing 1

Referenced in:

Ankyrin Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.2         40           2
 C cysteine            2.1         16           1
 D aspartate           3.7         28           2
 E glutamate           6.3         48           2
 F phenylalanine       3.8         29           2
 G glycine             3.7         28           1
 H histidine           3.0         23           1
 I isoleucine          4.8         37           2
 K lysine              5.0         38           2
 L leucine            11.4         87           4
 M methionine          3.0         23           1
 N asparagine          5.0         38           3
 P proline             3.9         30           1
 Q glutamine           6.8         52           2
 R arginine            6.2         47           2
 S serine              9.4         72           5
 T threonine           6.8         52           3
 V valine              5.2         40           2
 W tryptophan          1.6         12           1
 Y tyrosine            3.0         23           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ankyrin-repeat and fibronectin type III domain cont... 
ITGB4                 0.014   integrin beta 4 isoform 2 precursor 
ITGB4                 0.014   integrin beta 4 isoform 1 precursor 
ITGB4                 0.014   integrin beta 4 isoform 3 precursor 
TTN                   0.013   titin isoform N2-A 
TTN                   0.013   titin isoform novex-2 
TTN                   0.013   titin isoform novex-1 
TTN                   0.013   titin isoform N2-B 
DCC                   0.011   deleted in colorectal carcinoma 
PTPRD                 0.010   protein tyrosine phosphatase, receptor type, D isofor...
PTPRD                 0.010   protein tyrosine phosphatase, receptor type, D isofo...
PTPRD                 0.010   protein tyrosine phosphatase, receptor type, D isofo...
CNTN4                 0.009   contactin 4 isoform c precursor 
CNTN4                 0.009   contactin 4 isoform b precursor 
CNTN4                 0.009   contactin 4 isoform a precursor 
NFKBIE                0.009   nuclear factor of kappa light polypeptide gene enhan...
CCDC52                0.009   coiled-coil domain containing 52 
MYBPH                 0.009   myosin binding protein H 
PTPRS                 0.009   protein tyrosine phosphatase, receptor type, sigma ...
PTPRS                 0.009   protein tyrosine phosphatase, receptor type, sigma ...
PTPRS                 0.009   protein tyrosine phosphatase, receptor type, sigma ...
PTPRS                 0.009   protein tyrosine phosphatase, receptor type, sigma ...
CNTN1                 0.008   contactin 1 isoform 1 precursor 
CNTN1                 0.008   contactin 1 isoform 2 precursor 
ANKRD7                0.008   ankyrin repeat domain 7 
PTPRF                 0.008   protein tyrosine phosphatase, receptor type, F isof...
PTPRF                 0.008   protein tyrosine phosphatase, receptor type, F isof...
PPP1R12A              0.008   protein phosphatase 1, regulatory (inhibitor) subun...
PPP1R12A              0.008   protein phosphatase 1, regulatory (inhibitor) subunit...
CNTN2                 0.008   contactin 2 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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