Search of human proteins with 194394174

Search of human proteins with 194394174

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|194394174 interferon, alpha 13 precursor [Homo sapiens]
         (190 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|194394174 interferon, alpha 13 precursor [Homo sapiens]            381   e-106
gi|13128950 interferon, alpha 1 [Homo sapiens]                        377   e-105
gi|4504597 interferon, alpha 5 [Homo sapiens]                         325   2e-89
gi|11128015 interferon, alpha 6 [Homo sapiens]                        316   9e-87
gi|170763491 interferon, alpha 14 [Homo sapiens]                      314   3e-86
gi|10835103 interferon, alpha 4 [Homo sapiens]                        305   1e-83
gi|169791013 interferon, alpha 21 [Homo sapiens]                      305   1e-83
gi|11067751 interferon, alpha 2 [Homo sapiens]                        303   8e-83
gi|10880985 interferon, alpha 17 [Homo sapiens]                       302   1e-82
gi|4504589 interferon, alpha 10 [Homo sapiens]                        301   2e-82
gi|71143135 interferon, alpha 7 [Homo sapiens]                        291   3e-79
gi|4504593 interferon, alpha 16 [Homo sapiens]                        286   7e-78
gi|42476083 interferon, alpha 8 [Homo sapiens]                        279   1e-75
gi|4504605 interferon, omega 1 [Homo sapiens]                         202   2e-52
gi|28882045 interferon, epsilon [Homo sapiens]                        111   4e-25
gi|4504603 interferon, beta 1, fibroblast [Homo sapiens]               91   6e-19
gi|112789564 interferon kappa precursor [Homo sapiens]                 75   3e-14
gi|38045938 ring finger protein 144 [Homo sapiens]                     31   0.56 
gi|153791628 MCF.2 cell line derived transforming sequence isofo...    28   3.6  
gi|153791325 MCF.2 cell line derived transforming sequence isofo...    28   3.6  
gi|13899251 component of golgi transport complex 3 [Homo sapiens]      28   4.8  
gi|223029500 EF-hand calcium binding domain 5 isoform b [Homo sa...    27   8.1  
gi|90652855 EF-hand calcium binding domain 5 isoform a [Homo sap...    27   8.1  

>gi|194394174 interferon, alpha 13 precursor [Homo sapiens]
          Length = 190

 Score =  381 bits (978), Expect = e-106
 Identities = 190/190 (100%), Positives = 190/190 (100%)

Query: 1   MMASPFALLMALVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDF 60
           MMASPFALLMALVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDF
Sbjct: 1   MMASPFALLMALVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDF 60

Query: 61  GFPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDL 120
           GFPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDL
Sbjct: 61  GFPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDL 120

Query: 121 EACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLST 180
           EACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLST
Sbjct: 121 EACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLST 180

Query: 181 NLQERLRRKE 190
           NLQERLRRKE
Sbjct: 181 NLQERLRRKE 190


>gi|13128950 interferon, alpha 1 [Homo sapiens]
          Length = 189

 Score =  377 bits (969), Expect = e-105
 Identities = 188/189 (99%), Positives = 188/189 (99%)

Query: 2   MASPFALLMALVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFG 61
           MASPFALLM LVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFG
Sbjct: 1   MASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFG 60

Query: 62  FPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLE 121
           FPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLE
Sbjct: 61  FPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLE 120

Query: 122 ACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLSTN 181
           ACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLSTN
Sbjct: 121 ACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLSTN 180

Query: 182 LQERLRRKE 190
           LQERLRRKE
Sbjct: 181 LQERLRRKE 189


>gi|4504597 interferon, alpha 5 [Homo sapiens]
          Length = 189

 Score =  325 bits (832), Expect = 2e-89
 Identities = 160/189 (84%), Positives = 170/189 (89%)

Query: 2   MASPFALLMALVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFG 61
           MA PF LLMALVVL+CKS CSLGCDLP+THSL NRRTLM++AQM RISP SCL DRHDFG
Sbjct: 1   MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG 60

Query: 62  FPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLE 121
           FPQEEFDGNQFQKA AISVLHE+IQQ FNLF+TKDSSA WDE LLDKF TELYQQLNDLE
Sbjct: 61  FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE 120

Query: 122 ACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLSTN 181
           AC+MQE  V +TPLMN DSIL V+KYF+RITLYLTEKKYSPCAWEVVRAEIMRS SLS N
Sbjct: 121 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN 180

Query: 182 LQERLRRKE 190
           LQERLRRKE
Sbjct: 181 LQERLRRKE 189


>gi|11128015 interferon, alpha 6 [Homo sapiens]
          Length = 189

 Score =  316 bits (809), Expect = 9e-87
 Identities = 161/189 (85%), Positives = 168/189 (88%)

Query: 2   MASPFALLMALVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFG 61
           MA PFALLMALVVLSCKSSCSL CDLP+THSL +RRT+MLLAQM RIS  SCL DRHDF 
Sbjct: 1   MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR 60

Query: 62  FPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLE 121
           FPQEEFDGNQFQKA AISVLHE+IQQ FNLF+TKDSS AWDE LLDK  TELYQQLNDLE
Sbjct: 61  FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE 120

Query: 122 ACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLSTN 181
           ACVMQE  VG TPLMN DSILAV+KYF+RITLYLTEKKYSPCAWEVVRAEIMRS S S N
Sbjct: 121 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN 180

Query: 182 LQERLRRKE 190
           LQERLRRKE
Sbjct: 181 LQERLRRKE 189


>gi|170763491 interferon, alpha 14 [Homo sapiens]
          Length = 189

 Score =  314 bits (804), Expect = 3e-86
 Identities = 156/189 (82%), Positives = 172/189 (91%)

Query: 2   MASPFALLMALVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFG 61
           MA PFAL+MALVVLSCKSSCSLGC+L +THSL+NRRTLML+AQM RISP SCL DRHDF 
Sbjct: 1   MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE 60

Query: 62  FPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLE 121
           FPQEEFDGNQFQKA AISVLHE++QQ FNLF+TK+SSAAWDE LL+KF  EL+QQ+NDLE
Sbjct: 61  FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE 120

Query: 122 ACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLSTN 181
           ACV+QE  V ETPLMN DSILAVKKYF+RITLYL EKKYSPCAWEVVRAEIMRSLS STN
Sbjct: 121 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN 180

Query: 182 LQERLRRKE 190
           LQ+RLRRK+
Sbjct: 181 LQKRLRRKD 189


>gi|10835103 interferon, alpha 4 [Homo sapiens]
          Length = 189

 Score =  305 bits (782), Expect = 1e-83
 Identities = 152/189 (80%), Positives = 170/189 (89%)

Query: 2   MASPFALLMALVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFG 61
           MA  F+LLMA++VLS KS CSLGCDLP+THSL NRR L+LLAQM RIS  SCL DRHDFG
Sbjct: 1   MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDFG 60

Query: 62  FPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLE 121
           FP+EEFDG+QFQKA AISVLHE+IQQ FNLF+T+DSSAAW++ LL+KF TELYQQLNDLE
Sbjct: 61  FPEEEFDGHQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 120

Query: 122 ACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLSTN 181
           ACV+QE  V ETPLMN DSILAV+KYF+RITLYLTEKKYSPCAWEVVRAEIMRSLS STN
Sbjct: 121 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN 180

Query: 182 LQERLRRKE 190
           LQ+RLRRK+
Sbjct: 181 LQKRLRRKD 189


>gi|169791013 interferon, alpha 21 [Homo sapiens]
          Length = 189

 Score =  305 bits (782), Expect = 1e-83
 Identities = 154/189 (81%), Positives = 166/189 (87%)

Query: 2   MASPFALLMALVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFG 61
           MA  F+LLMA++VLS KS CSLGCDLP+THSL NRR L+LLAQM RISP SCL DRHDFG
Sbjct: 1   MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 60

Query: 62  FPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLE 121
           FPQEEFDGNQFQKA AISVLHE+IQQ FNLF+TKDSSA W++ LL+KF TEL QQLNDLE
Sbjct: 61  FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDLE 120

Query: 122 ACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLSTN 181
           ACV+QE  V ETPLMN DSILAVKKYF+RITLYLTEKKYSPCAWEVVRAEIMRS SLS  
Sbjct: 121 ACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSKI 180

Query: 182 LQERLRRKE 190
            QERLRRKE
Sbjct: 181 FQERLRRKE 189


>gi|11067751 interferon, alpha 2 [Homo sapiens]
          Length = 188

 Score =  303 bits (775), Expect = 8e-83
 Identities = 156/189 (82%), Positives = 166/189 (87%), Gaps = 1/189 (0%)

Query: 2   MASPFALLMALVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFG 61
           MA  FALL+AL+VLSCKSSCS+GCDLP+THSL +RRTLMLLAQM RIS  SCL DRHDFG
Sbjct: 1   MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDFG 60

Query: 62  FPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLE 121
           FPQEEF GNQFQKA  I VLHE+IQQIFNLF+TKDSSAAWDE LLDKF TELYQQLNDLE
Sbjct: 61  FPQEEF-GNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLE 119

Query: 122 ACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLSTN 181
           ACV+Q   V ETPLM  DSILAV+KYF+RITLYL EKKYSPCAWEVVRAEIMRS SLSTN
Sbjct: 120 ACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTN 179

Query: 182 LQERLRRKE 190
           LQE LR KE
Sbjct: 180 LQESLRSKE 188


>gi|10880985 interferon, alpha 17 [Homo sapiens]
          Length = 189

 Score =  302 bits (773), Expect = 1e-82
 Identities = 150/189 (79%), Positives = 168/189 (88%)

Query: 2   MASPFALLMALVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFG 61
           MA  F+LLMA++VLS KS CSLGCDLP+THSL NRR L+LLAQM RISP SCL DRHDFG
Sbjct: 1   MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 60

Query: 62  FPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLE 121
            PQEEFDGNQFQK  AISVLHE+IQQ FNLF+T+DSSAAW++ LL+KF TELYQQLN+LE
Sbjct: 61  LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE 120

Query: 122 ACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLSTN 181
           ACV+QE  + ETPLMN DSILAV+KYF+RITLYLTEKKYSPCAWEVVRAEIMRSLS STN
Sbjct: 121 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN 180

Query: 182 LQERLRRKE 190
           LQ+ LRRK+
Sbjct: 181 LQKILRRKD 189


>gi|4504589 interferon, alpha 10 [Homo sapiens]
          Length = 189

 Score =  301 bits (772), Expect = 2e-82
 Identities = 150/189 (79%), Positives = 167/189 (88%)

Query: 2   MASPFALLMALVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFG 61
           MA  F+LLMA++VLS KS CSLGCDLP+THSL NRR L+LL QM RISP SCL DRHDF 
Sbjct: 1   MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR 60

Query: 62  FPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLE 121
            PQEEFDGNQFQKA AISVLHE+IQQ FNLF+T+DSSAAW++ LL+KF TELYQQLNDLE
Sbjct: 61  IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 120

Query: 122 ACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLSTN 181
           ACV+QE  V ETPLMN DSILAV+KYF+RITLYL E+KYSPCAWEVVRAEIMRSLS STN
Sbjct: 121 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN 180

Query: 182 LQERLRRKE 190
           LQ+RLRRK+
Sbjct: 181 LQKRLRRKD 189


>gi|71143135 interferon, alpha 7 [Homo sapiens]
          Length = 189

 Score =  291 bits (744), Expect = 3e-79
 Identities = 144/189 (76%), Positives = 164/189 (86%)

Query: 2   MASPFALLMALVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFG 61
           MA  F+LLM ++VLS KS CSLGCDLP+THSL NRR L+LLAQM RISP SCL DRH+F 
Sbjct: 1   MARSFSLLMVVLVLSYKSICSLGCDLPQTHSLRNRRALILLAQMGRISPFSCLKDRHEFR 60

Query: 62  FPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLE 121
           FP+EEFDG+QFQK  AISVLHE+IQQ FNLF+T+DSSAAW++ LL+KF TELYQQLNDLE
Sbjct: 61  FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 120

Query: 122 ACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLSTN 181
           ACV+QE  V ETPLMN D ILAV+KYF+RITLYL EKKYSPCAWEVVRAEIMRS S STN
Sbjct: 121 ACVIQEVGVEETPLMNEDFILAVRKYFQRITLYLMEKKYSPCAWEVVRAEIMRSFSFSTN 180

Query: 182 LQERLRRKE 190
           L++ LRRK+
Sbjct: 181 LKKGLRRKD 189


>gi|4504593 interferon, alpha 16 [Homo sapiens]
          Length = 189

 Score =  286 bits (732), Expect = 7e-78
 Identities = 146/189 (77%), Positives = 159/189 (84%)

Query: 2   MASPFALLMALVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFG 61
           MA  F+LLMA++VLS KS CSLGCDLP+THSL NRR L+LLAQM RIS  SCL DR+DFG
Sbjct: 1   MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG 60

Query: 62  FPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLE 121
           FPQE FDGNQFQKA AIS  HE+IQQ FNLF+TKDSSAAWDE LLDKF  EL+QQLNDLE
Sbjct: 61  FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE 120

Query: 122 ACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLSTN 181
           ACV QE  V E  LMN DSILAV+KYF+RITLYL  KKYSPCAWEVVRAEIMRS S STN
Sbjct: 121 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN 180

Query: 182 LQERLRRKE 190
           LQ+ LRRK+
Sbjct: 181 LQKGLRRKD 189


>gi|42476083 interferon, alpha 8 [Homo sapiens]
          Length = 189

 Score =  279 bits (713), Expect = 1e-75
 Identities = 147/189 (77%), Positives = 159/189 (84%)

Query: 2   MASPFALLMALVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFG 61
           MA  F LL+ALVVLS KS  SLGCDLP+THSL NRR L+LLAQM RISP SCL DRHDF 
Sbjct: 1   MALTFYLLVALVVLSYKSFSSLGCDLPQTHSLGNRRALILLAQMRRISPFSCLKDRHDFE 60

Query: 62  FPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLE 121
           FPQEEFD  QFQKA AISVLHE+IQQ FNLF+TKDSSAA DE LLD+F  EL QQLNDLE
Sbjct: 61  FPQEEFDDKQFQKAQAISVLHEMIQQTFNLFSTKDSSAALDETLLDEFYIELDQQLNDLE 120

Query: 122 ACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLSTN 181
           +CVMQE  V E+PLM  DSILAV+KYF+RITLYLTEKKYS CAWEVVRAEIMRS SLS N
Sbjct: 121 SCVMQEVGVIESPLMYEDSILAVRKYFQRITLYLTEKKYSSCAWEVVRAEIMRSFSLSIN 180

Query: 182 LQERLRRKE 190
           LQ+RL+ KE
Sbjct: 181 LQKRLKSKE 189


>gi|4504605 interferon, omega 1 [Homo sapiens]
          Length = 195

 Score =  202 bits (513), Expect = 2e-52
 Identities = 108/189 (57%), Positives = 133/189 (70%)

Query: 2   MASPFALLMALVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFG 61
           MA  F LL ALV+ S     SLGCDLP+ H L +R TL+LL QM RISP  CL DR DF 
Sbjct: 1   MALLFPLLAALVMTSYSPVGSLGCDLPQNHGLLSRNTLVLLHQMRRISPFLCLKDRRDFR 60

Query: 62  FPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLE 121
           FPQE   G+Q QKA  +SVLHE++QQIF+LF T+ SSAAW+  LLD+  T L+QQL  LE
Sbjct: 61  FPQEMVKGSQLQKAHVMSVLHEMLQQIFSLFHTERSSAAWNMTLLDQLHTGLHQQLQHLE 120

Query: 122 ACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLSTN 181
            C++Q    GE+    +   L +++YF+ I +YL EKKYS CAWEVVR EIM+SL LSTN
Sbjct: 121 TCLLQVVGEGESAGAISSPALTLRRYFQGIRVYLKEKKYSDCAWEVVRMEIMKSLFLSTN 180

Query: 182 LQERLRRKE 190
           +QERLR K+
Sbjct: 181 MQERLRSKD 189


>gi|28882045 interferon, epsilon [Homo sapiens]
          Length = 208

 Score =  111 bits (277), Expect = 4e-25
 Identities = 61/157 (38%), Positives = 96/157 (61%), Gaps = 4/157 (2%)

Query: 35  NRRTLMLLAQMSRISPSSCLMDRHDFGFPQEEFDGNQFQKAPAISVLHELIQQIFNLFTT 94
           N+ +L LL ++  +S   CL  R +F  PQ+     Q+QK   +++LHE++QQIF+LF  
Sbjct: 35  NQESLKLLNKLQTLSIQQCLPHRKNFLLPQKSLSPQQYQKGHTLAILHEMLQQIFSLFRA 94

Query: 95  KDSSAAWDEDLLDKFCTELYQQLNDLEACV-MQEERVGETPLMNADSI-LAVKKYFRRIT 152
             S   W+E+  +KF  +L+QQL  LEA + ++ E++  T  + +D++ L VK YFRRI 
Sbjct: 95  NISLDGWEENHTEKFLIQLHQQLEYLEALMGLEAEKLSGT--LGSDNLRLQVKMYFRRIH 152

Query: 153 LYLTEKKYSPCAWEVVRAEIMRSLSLSTNLQERLRRK 189
            YL  + YS CAW +V+ EI R L    +L E+L ++
Sbjct: 153 DYLENQDYSTCAWAIVQVEISRCLFFVFSLTEKLSKQ 189


>gi|4504603 interferon, beta 1, fibroblast [Homo sapiens]
          Length = 187

 Score = 90.9 bits (224), Expect = 6e-19
 Identities = 47/135 (34%), Positives = 72/135 (53%)

Query: 53  CLMDRHDFGFPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTE 112
           CL DR +F  P+E     QFQK  A   ++E++Q IF +F    SS  W+E +++     
Sbjct: 52  CLKDRMNFDIPEEIKQLQQFQKEDAALTIYEMLQNIFAIFRQDSSSTGWNETIVENLLAN 111

Query: 113 LYQQLNDLEACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEI 172
           +Y Q+N L+  + ++    +       S L +K+Y+ RI  YL  K+YS CAW +VR EI
Sbjct: 112 VYHQINHLKTVLEEKLEKEDFTRGKLMSSLHLKRYYGRILHYLKAKEYSHCAWTIVRVEI 171

Query: 173 MRSLSLSTNLQERLR 187
           +R+      L   LR
Sbjct: 172 LRNFYFINRLTGYLR 186


>gi|112789564 interferon kappa precursor [Homo sapiens]
          Length = 207

 Score = 75.1 bits (183), Expect = 3e-14
 Identities = 62/195 (31%), Positives = 84/195 (43%), Gaps = 15/195 (7%)

Query: 9   LMALVVLSCKSSCSLGCDLPETHSLD-NRRTLMLLAQMSRISPSSCLMDRHDFGFPQEEF 67
           L  L+ +    + SL C+L   H      + L  L+ MS   P  CL +   F  PQE  
Sbjct: 14  LEILMGIFIAGTLSLDCNLLNVHLRRVTWQNLRHLSSMSNSFPVECLRENIAFELPQEFL 73

Query: 68  DGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLEACV--- 124
              Q  K       +E+  Q FN+F+ + +   W E  L +    L QQ   L  C+   
Sbjct: 74  QYTQPMKRDIKKAFYEMSLQAFNIFS-QHTFKYWKERHLKQIQIGLDQQAEYLNQCLEED 132

Query: 125 ------MQEERVGETPLMNAD----SILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMR 174
                 M+E +  E     A     S L +++YF RI  +L EKKYS CAWE+VR EI R
Sbjct: 133 KNENEDMKEMKENEMKPSEARVPQLSSLELRRYFHRIDNFLKEKKYSDCAWEIVRVEIRR 192

Query: 175 SLSLSTNLQERLRRK 189
            L          RRK
Sbjct: 193 CLYYFYKFTALFRRK 207


>gi|38045938 ring finger protein 144 [Homo sapiens]
          Length = 292

 Score = 31.2 bits (69), Expect = 0.56
 Identities = 15/28 (53%), Positives = 17/28 (60%)

Query: 1   MMASPFALLMALVVLSCKSSCSLGCDLP 28
           ++ASPF LL    VL CK  CS G D P
Sbjct: 262 LVASPFLLLATPFVLCCKCKCSKGDDDP 289


>gi|153791628 MCF.2 cell line derived transforming sequence isoform
           a [Homo sapiens]
          Length = 985

 Score = 28.5 bits (62), Expect = 3.6
 Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 103 EDLLDKFCTELYQQLND-----LEACVMQEERVGETPLMNADSILAVKKYF----RRITL 153
           +D+L     E+Y+  ND     LE C    ERVG   L   D      KY     R  T+
Sbjct: 602 KDILFGNMAEIYEFHNDIFLSSLENCAHAPERVGPCFLERKDDFQMYAKYCQNKPRSETI 661

Query: 154 YLTEKKYSPCA-WEVVRAEIMRSLSLSTNLQERLRR 188
           +   +KYS CA ++  + ++   L L + L + ++R
Sbjct: 662 W---RKYSECAFFQECQRKLKHRLRLDSYLLKPVQR 694


>gi|153791325 MCF.2 cell line derived transforming sequence isoform
           b [Homo sapiens]
          Length = 925

 Score = 28.5 bits (62), Expect = 3.6
 Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 103 EDLLDKFCTELYQQLND-----LEACVMQEERVGETPLMNADSILAVKKYF----RRITL 153
           +D+L     E+Y+  ND     LE C    ERVG   L   D      KY     R  T+
Sbjct: 542 KDILFGNMAEIYEFHNDIFLSSLENCAHAPERVGPCFLERKDDFQMYAKYCQNKPRSETI 601

Query: 154 YLTEKKYSPCA-WEVVRAEIMRSLSLSTNLQERLRR 188
           +   +KYS CA ++  + ++   L L + L + ++R
Sbjct: 602 W---RKYSECAFFQECQRKLKHRLRLDSYLLKPVQR 634


>gi|13899251 component of golgi transport complex 3 [Homo sapiens]
          Length = 828

 Score = 28.1 bits (61), Expect = 4.8
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 87  QIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLEACVMQEERVGE 132
           Q++N F TK +S    ++LL+K C  LY     L   V+  E + E
Sbjct: 382 QLYNEFFTKPTSKL--DELLEKLCVSLYDVFRPLIIHVIHLETLSE 425


>gi|223029500 EF-hand calcium binding domain 5 isoform b [Homo
           sapiens]
          Length = 856

 Score = 27.3 bits (59), Expect = 8.1
 Identities = 28/93 (30%), Positives = 38/93 (40%), Gaps = 7/93 (7%)

Query: 98  SAAWDEDLLDKFCTELYQQLNDL---EACVMQEERVGETPLMNADSILAVKKYFRRITL- 153
           SAA    L +    E YQ+       E    ++E +G T     DSIL   KY   IT  
Sbjct: 576 SAAEQGSLRESVIEEPYQKSEQGPYGEIISEEQEDIGSTSQSRKDSILKSTKYGEPITSE 635

Query: 154 YLTEKKYSPCAWEVVRAEIMRSLSLSTNLQERL 186
           Y+        +WE    E    + LS+ LQE +
Sbjct: 636 YIEVPLQEKRSWEQTYEE---EIFLSSELQEEV 665


>gi|90652855 EF-hand calcium binding domain 5 isoform a [Homo
           sapiens]
          Length = 1503

 Score = 27.3 bits (59), Expect = 8.1
 Identities = 28/93 (30%), Positives = 38/93 (40%), Gaps = 7/93 (7%)

Query: 98  SAAWDEDLLDKFCTELYQQLNDL---EACVMQEERVGETPLMNADSILAVKKYFRRITL- 153
           SAA    L +    E YQ+       E    ++E +G T     DSIL   KY   IT  
Sbjct: 632 SAAEQGSLRESVIEEPYQKSEQGPYGEIISEEQEDIGSTSQSRKDSILKSTKYGEPITSE 691

Query: 154 YLTEKKYSPCAWEVVRAEIMRSLSLSTNLQERL 186
           Y+        +WE    E    + LS+ LQE +
Sbjct: 692 YIEVPLQEKRSWEQTYEE---EIFLSSELQEEV 721


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.133    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,893,010
Number of Sequences: 37866
Number of extensions: 281541
Number of successful extensions: 619
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 596
Number of HSP's gapped (non-prelim): 25
length of query: 190
length of database: 18,247,518
effective HSP length: 96
effective length of query: 94
effective length of database: 14,612,382
effective search space: 1373563908
effective search space used: 1373563908
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.