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Search of human proteins with 194363768
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|194363768 homeobox D9 [Homo sapiens]
(352 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|194363768 homeobox D9 [Homo sapiens] 726 0.0
gi|24497547 homeobox C9 [Homo sapiens] 252 4e-67
gi|23097236 homeobox A9 [Homo sapiens] 220 1e-57
gi|15029508 homeobox B9 [Homo sapiens] 213 3e-55
gi|182765442 homeobox A10 isoform a [Homo sapiens] 146 3e-35
gi|23510366 homeobox D10 [Homo sapiens] 130 1e-30
gi|24497533 homeobox C10 [Homo sapiens] 127 1e-29
gi|24497551 homeobox A10 isoform b [Homo sapiens] 122 5e-28
gi|23510368 homeobox D11 [Homo sapiens] 115 8e-26
gi|24497517 homeobox A5 [Homo sapiens] 107 2e-23
gi|5031759 homeobox A11 [Homo sapiens] 106 3e-23
gi|89257348 homeo box HB9 [Homo sapiens] 105 5e-23
gi|24497556 homeobox A7 [Homo sapiens] 100 2e-21
gi|7657166 homeobox C11 [Homo sapiens] 100 2e-21
gi|85068580 homeobox B7 [Homo sapiens] 100 3e-21
gi|11321638 homeobox C5 [Homo sapiens] 100 3e-21
gi|13489077 homeobox A6 [Homo sapiens] 98 1e-20
gi|84570137 homeobox B3 [Homo sapiens] 97 2e-20
gi|4504469 homeobox B5 [Homo sapiens] 95 1e-19
gi|12056969 homeobox C8 [Homo sapiens] 94 2e-19
gi|23503237 homeobox B6 [Homo sapiens] 94 2e-19
gi|13273317 homeobox B8 [Homo sapiens] 93 3e-19
gi|19923391 homeobox D3 [Homo sapiens] 91 2e-18
gi|23397672 homeobox D4 [Homo sapiens] 90 3e-18
gi|27804315 homeobox C12 [Homo sapiens] 89 5e-18
gi|24497536 homeobox C13 [Homo sapiens] 89 6e-18
gi|24497554 homeobox A13 [Homo sapiens] 89 8e-18
gi|15029506 homeobox D8 [Homo sapiens] 88 1e-17
gi|4758554 homeobox C6 isoform 1 [Homo sapiens] 88 1e-17
gi|4758710 mesenchyme homeobox 1 isoform 1 [Homo sapiens] 88 1e-17
>gi|194363768 homeobox D9 [Homo sapiens]
Length = 352
Score = 726 bits (1875), Expect = 0.0
Identities = 352/352 (100%), Positives = 352/352 (100%)
Query: 1 MLGGSAGRLKMSSSGTLSNYYVDSLIGHEGDEVFAARFGPPGPGAQGRPAGVADGPAATA 60
MLGGSAGRLKMSSSGTLSNYYVDSLIGHEGDEVFAARFGPPGPGAQGRPAGVADGPAATA
Sbjct: 1 MLGGSAGRLKMSSSGTLSNYYVDSLIGHEGDEVFAARFGPPGPGAQGRPAGVADGPAATA 60
Query: 61 AEFASCSFAPRSAVFSASWSAVPSQPPAAAAMSGLYHPYVPPPPLAASASEPGRYVRSWM 120
AEFASCSFAPRSAVFSASWSAVPSQPPAAAAMSGLYHPYVPPPPLAASASEPGRYVRSWM
Sbjct: 61 AEFASCSFAPRSAVFSASWSAVPSQPPAAAAMSGLYHPYVPPPPLAASASEPGRYVRSWM 120
Query: 121 EPLPGFPGGAGGGGGGGGGGPGRGPSPGPSGPANGRHYGIKPETRAAPAPATAASTTSSS 180
EPLPGFPGGAGGGGGGGGGGPGRGPSPGPSGPANGRHYGIKPETRAAPAPATAASTTSSS
Sbjct: 121 EPLPGFPGGAGGGGGGGGGGPGRGPSPGPSGPANGRHYGIKPETRAAPAPATAASTTSSS 180
Query: 181 STSLSSSSKRTECSVARESQGSSGPEFSCNSFLQEKAAAATGGTGPGAGIGAATGTGGSS 240
STSLSSSSKRTECSVARESQGSSGPEFSCNSFLQEKAAAATGGTGPGAGIGAATGTGGSS
Sbjct: 181 STSLSSSSKRTECSVARESQGSSGPEFSCNSFLQEKAAAATGGTGPGAGIGAATGTGGSS 240
Query: 241 EPSACSDHPIPGCSLKEEEKQHSQPQQQQLDPNNPAANWIHARSTRKKRCPYTKYQTLEL 300
EPSACSDHPIPGCSLKEEEKQHSQPQQQQLDPNNPAANWIHARSTRKKRCPYTKYQTLEL
Sbjct: 241 EPSACSDHPIPGCSLKEEEKQHSQPQQQQLDPNNPAANWIHARSTRKKRCPYTKYQTLEL 300
Query: 301 EKEFLFNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKKMSKEKCPKGD 352
EKEFLFNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKKMSKEKCPKGD
Sbjct: 301 EKEFLFNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKKMSKEKCPKGD 352
>gi|24497547 homeobox C9 [Homo sapiens]
Length = 260
Score = 252 bits (643), Expect = 4e-67
Identities = 157/341 (46%), Positives = 188/341 (55%), Gaps = 85/341 (24%)
Query: 11 MSSSGTLSNYYVDSLIGHEGDEVFAARFGPPGPG-AQGRPAGVADGPAATAAEFASCSFA 69
MS++G +SNYYVDSLI H+ +++ A+RF G A RP+G+ ++F SCSFA
Sbjct: 1 MSATGPISNYYVDSLISHDNEDLLASRFPATGAHPAAARPSGLVPD----CSDFPSCSFA 56
Query: 70 PRSAVFSASWSAVPSQPPAAAAMSGLYHPYVPPPPLAASASEPGRYVRSWMEPLPGFPGG 129
P+ AVFS SW+ VPSQ S +YHPY P P L A RY+R+W+EPL G
Sbjct: 57 PKPAVFSTSWAPVPSQS------SVVYHPYGPQPHLGADT----RYMRTWLEPLSGAVSF 106
Query: 130 AGGGGGGGGGGPGRGPSPGPSGPANGRHYGIKPETRAAPAPATAASTTSSSSTSLSSSSK 189
PS PA GRHY +KP+ + +
Sbjct: 107 -------------------PSFPAGGRHYALKPD---------------------AYPGR 126
Query: 190 RTECSVARESQGSSGPEFSCNSFLQEKAAAATGGTGPGAGIGAATGTGGSSEPSACSDHP 249
R +C +G S P++ S PG A T S E A
Sbjct: 127 RADCG---PGEGRSYPDYMYGS--------------PGELRDRAPQTLPSPEADA----- 164
Query: 250 IPGCSLKEEEKQHSQPQQQQLDPNNPAANWIHARSTRKKRCPYTKYQTLELEKEFLFNMY 309
+ G KEE+ LDP+NP ANWIHARSTRKKRCPYTKYQTLELEKEFLFNMY
Sbjct: 165 LAGSKHKEEKAD--------LDPSNPVANWIHARSTRKKRCPYTKYQTLELEKEFLFNMY 216
Query: 310 LTRDRRYEVARILNLTERQVKIWFQNRRMKMKKMSKEKCPK 350
LTRDRRYEVAR+LNLTERQVKIWFQNRRMKMKKM+KEK K
Sbjct: 217 LTRDRRYEVARVLNLTERQVKIWFQNRRMKMKKMNKEKTDK 257
>gi|23097236 homeobox A9 [Homo sapiens]
Length = 272
Score = 220 bits (561), Expect = 1e-57
Identities = 150/349 (42%), Positives = 181/349 (51%), Gaps = 93/349 (26%)
Query: 11 MSSSGTLSNYYVDS-LIGHEG-DEVFAARFGPPGPGAQGRPAGVADGPAATAAE---FAS 65
M+++G L NYYVDS L+G + DE+ R+ P G G+P AAT AE F+
Sbjct: 1 MATTGALGNYYVDSFLLGADAADELSVGRYAP---GTLGQPPR----QAATLAEHPDFSP 53
Query: 66 CSFAPRSAVFSASWSAV----PSQPPAAAAMSGLYHPYVPPPPLAASASEPGRYVRSWME 121
CSF ++ VF ASW+ V + PAA +HPYV P A+A+ GRY+RSW+E
Sbjct: 54 CSFQSKATVFGASWNPVHAAGANAVPAAVYHHHHHHPYVHPQAPVAAAAPDGRYMRSWLE 113
Query: 122 PLPGFPGGAGGGGGGGGGGPGRGPSPGPSGPANGRHYGIKPE---TRAAPAPATAASTTS 178
P PG AG PS P YGIKPE R P T S
Sbjct: 114 PTPGALSFAGL------------PSSRP--------YGIKPEPLSARRGDCPTLDTHTLS 153
Query: 179 SSSTSLSSSSKRTECSVARESQGSSGPEFSCNSFLQEKAAAATGGTGPGAGIGAATGTGG 238
+ + S V RE Q S G +F + A +GG P
Sbjct: 154 LTDYACGSPP------VDREKQPSEG------AFSENNAENESGGDKP------------ 189
Query: 239 SSEPSACSDHPIPGCSLKEEEKQHSQPQQQQLDPNNPAANWIHARSTRKKRCPYTKYQTL 298
+DPNNPAANW+HARSTRKKRCPYTK+QTL
Sbjct: 190 ------------------------------PIDPNNPAANWLHARSTRKKRCPYTKHQTL 219
Query: 299 ELEKEFLFNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKKMSKEK 347
ELEKEFLFNMYLTRDRRYEVAR+LNLTERQVKIWFQNRRMKMKK++K++
Sbjct: 220 ELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDR 268
>gi|15029508 homeobox B9 [Homo sapiens]
Length = 250
Score = 213 bits (541), Expect = 3e-55
Identities = 140/337 (41%), Positives = 175/337 (51%), Gaps = 90/337 (26%)
Query: 11 MSSSGTLSNYYVDSLIGHEGDEVFAARFGPPGPGAQGRPAGVADGPAATAAEFASCSFAP 70
MS SGTLS+YYVDS+I HE ++ A+F P G A R G A+ EF SCSF P
Sbjct: 1 MSISGTLSSYYVDSIISHESEDAPPAKF-PSGQYASSRQPGHAE-----HLEFPSCSFQP 54
Query: 71 RSAVFSASWSAVPSQPPAAAAMSGLYHPYVPPPPLAASASEPGRYVRSWMEPLPGFPGGA 130
++ VF ASW+ P P A+ ++ +YHPY+ P + + S RY+R+W+EP P
Sbjct: 55 KAPVFGASWA--PLSPHASGSLPSVYHPYIQPQGVPPAES---RYLRTWLEPAP------ 103
Query: 131 GGGGGGGGGGPGRGPSPGPSGPANGRHYGIKPETRAAPAPATAASTTSSSSTSLSSSSKR 190
G PG+G + + P G AP T S
Sbjct: 104 -----RGEAAPGQGQAAVKAEPLLG-----------APGELLKQGTPEYS---------- 137
Query: 191 TECSVARESQGSSGPEFSCNSFLQEKAAAATGGTGPGAGIGAATGTGGSSEPSACSDHPI 250
E S RE A PG G D+ I
Sbjct: 138 LETSAGRE--------------------AVLSNQRPGYG-----------------DNKI 160
Query: 251 PGCSLKEEEKQHSQPQQQQLDPNNPAANWIHARSTRKKRCPYTKYQTLELEKEFLFNMYL 310
C E++++ Q NP+ANW+HARS+RKKRCPYTKYQTLELEKEFLFNMYL
Sbjct: 161 --CEGSEDKERPDQ--------TNPSANWLHARSSRKKRCPYTKYQTLELEKEFLFNMYL 210
Query: 311 TRDRRYEVARILNLTERQVKIWFQNRRMKMKKMSKEK 347
TRDRR+EVAR+LNL+ERQVKIWFQNRRMKMKKM+KE+
Sbjct: 211 TRDRRHEVARLLNLSERQVKIWFQNRRMKMKKMNKEQ 247
>gi|182765442 homeobox A10 isoform a [Homo sapiens]
Length = 410
Score = 146 bits (368), Expect = 3e-35
Identities = 112/319 (35%), Positives = 144/319 (45%), Gaps = 64/319 (20%)
Query: 39 GPPGPGAQGRPAGVADGPAATAAEFASCSFAPRSAVFSAS--WSAVPSQPPAAAAMSGLY 96
GPP P Q P P A + SCSFA S+ + + P +A + L
Sbjct: 132 GPPPPPQQQPPP--PPQPPQPAPQATSCSFAQNIKEESSYCLYDSADKCPKVSATAAELA 189
Query: 97 -HPYVPPPPLAASASEPGRYVRSWMEPLPGF------PGGAGGGGGGGGGGPGRGPSPGP 149
P PPP A + G P+PG+ G A G G GGGG G P P
Sbjct: 190 PFPRGPPPDGCALGTSSG-------VPVPGYFRLSQAYGTAKGYGSGGGGAQQLGAGPFP 242
Query: 150 SGPANGRHYGIKPETRAAPAPATAASTTSSSSTSLSSSSKRTECSVARESQGSSGPEFSC 209
+ P GR + + P + A A AR+ + P
Sbjct: 243 AQPP-GRGFDLPPALASGSADA------------------------ARKERALDSPP--- 274
Query: 210 NSFLQEKAAAATGGTGPGAGIGAATGTGGSSEPSACSDHPIPGCSLKEEEKQHSQPQQQQ 269
P G+ G+ G E A S S E + P++
Sbjct: 275 ---------------PPTLACGSGGGSQGDEEAHASSS-AAEELSPAPSESSKASPEKDS 318
Query: 270 L--DPNNPAANWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARILNLTER 327
L AANW+ A+S RKKRCPYTK+QTLELEKEFLFNMYLTR+RR E++R ++LT+R
Sbjct: 319 LGNSKGENAANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDR 378
Query: 328 QVKIWFQNRRMKMKKMSKE 346
QVKIWFQNRRMK+KKM++E
Sbjct: 379 QVKIWFQNRRMKLKKMNRE 397
Score = 35.8 bits (81), Expect = 0.059
Identities = 44/166 (26%), Positives = 55/166 (33%), Gaps = 34/166 (20%)
Query: 128 GGAGGGGGGGGGGPGRGPSPGPSGPANGRHYGIKPETRAAPAPATAASTTSSSSTSLSSS 187
G AGGGGGG GGG G G A+G Y P A S +
Sbjct: 40 GEAGGGGGGAGGGGGGGYY------AHGGVY--------LPPAADLPYGLQSCGLFPTLG 85
Query: 188 SKRTECSVARESQGSSGPEFSCNSFLQEKAAAATGGTGPGA-GIGAATGTGGSSEPSACS 246
KR E + S GS G GG GPGA G G + P +C
Sbjct: 86 GKRNEAA----SPGSGG---------------GGGGLGPGAHGYGPSPIDLWLDAPRSCR 126
Query: 247 DHPIPGCSLKEEEKQHSQPQQQQLDPNNPAANWIHARSTRKKRCPY 292
P G +++ PQ Q P + ++ C Y
Sbjct: 127 MEPPDGPPPPPQQQPPPPPQPPQPAPQATSCSFAQNIKEESSYCLY 172
>gi|23510366 homeobox D10 [Homo sapiens]
Length = 340
Score = 130 bits (328), Expect = 1e-30
Identities = 68/150 (45%), Positives = 99/150 (66%), Gaps = 8/150 (5%)
Query: 200 QGSSGPEFSCNSF-LQEKAAAATGGTGPG--AGIGAATGTGGSSEPSACSDHPIPGCSLK 256
+G++ P+ S +++K G P + + + GG E +C + S+
Sbjct: 183 RGAAKPQLSAAQLQMEKKMNEPVSGQEPTKVSQVESPEAKGGLPEERSC----LAEVSVS 238
Query: 257 EEEKQHSQPQQQQLDPNNPAANWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRY 316
E Q + ++++ + P +NW+ A+S RKKRCPYTK+QTLELEKEFLFNMYLTR+RR
Sbjct: 239 SPEVQEKE-SKEEIKSDTPTSNWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRL 297
Query: 317 EVARILNLTERQVKIWFQNRRMKMKKMSKE 346
E+++ +NLT+RQVKIWFQNRRMK+KKMS+E
Sbjct: 298 EISKSVNLTDRQVKIWFQNRRMKLKKMSRE 327
>gi|24497533 homeobox C10 [Homo sapiens]
Length = 342
Score = 127 bits (320), Expect = 1e-29
Identities = 75/179 (41%), Positives = 100/179 (55%), Gaps = 12/179 (6%)
Query: 180 SSTSLSSSSKRTECSVARESQGSSGPEFSCNSFLQEKAAAATGGT-----GPGAGIGAAT 234
+S S S+ K CS A + + S N + + GG P + +
Sbjct: 151 ASPSYSALDKTPHCSGANDFEAPFEQRASLNPRAEHLESPQLGGKVSFPETPKSDSQTPS 210
Query: 235 GTGGSSEPSACSDHPIPGCSLKEEEKQ-HSQPQ------QQQLDPNNPAANWIHARSTRK 287
+E S P S KE K S P ++++ N NW+ A+S RK
Sbjct: 211 PNEIKTEQSLAGPKGSPSESEKERAKAADSSPDTSDNEAKEEIKAENTTGNWLTAKSGRK 270
Query: 288 KRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKKMSKE 346
KRCPYTK+QTLELEKEFLFNMYLTR+RR E+++ +NLT+RQVKIWFQNRRMK+KKM++E
Sbjct: 271 KRCPYTKHQTLELEKEFLFNMYLTRERRLEISKTINLTDRQVKIWFQNRRMKLKKMNRE 329
>gi|24497551 homeobox A10 isoform b [Homo sapiens]
Length = 94
Score = 122 bits (306), Expect = 5e-28
Identities = 55/71 (77%), Positives = 67/71 (94%)
Query: 276 AANWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARILNLTERQVKIWFQN 335
AANW+ A+S RKKRCPYTK+QTLELEKEFLFNMYLTR+RR E++R ++LT+RQVKIWFQN
Sbjct: 11 AANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQN 70
Query: 336 RRMKMKKMSKE 346
RRMK+KKM++E
Sbjct: 71 RRMKLKKMNRE 81
>gi|23510368 homeobox D11 [Homo sapiens]
Length = 338
Score = 115 bits (287), Expect = 8e-26
Identities = 97/338 (28%), Positives = 139/338 (41%), Gaps = 62/338 (18%)
Query: 55 GPAATAAEFASCSF--APRSAVFSASWSAVPSQPPAAAAMSGLYHPYVPPPPLAASASEP 112
G +A + C++ AP S+ + PS S P+V P A +
Sbjct: 8 GQSAASMYLPGCAYYVAPSDFASKPSFLSQPSSCQMTFPYSSNLAPHVQPVREVAFR-DY 66
Query: 113 GRYVRSWMEPLPGFPGGAGGGGGGGGGGPGRGPSPGPSGPANGRHYGIKPETRAAPAPAT 172
G W P G GG GGG GGGPG G G G + AA A A
Sbjct: 67 GLERAKW--PYRGGGGGGSAGGGSSGGGPGGG------GGGAGGYAPYYAAAAAAAAAAA 118
Query: 173 AASTTSSSSTSLSSSSKRTE---------CSVARESQGSSGPEFSCNSFL---------- 213
AA + L + +R + C+ G +G + S +
Sbjct: 119 AAEEAAMQRELLPPAGRRPDVLFKAPEPVCAAPGPPHGPAGAASNFYSAVGRNGILPQGF 178
Query: 214 ------------------------QEKAAAATGGTGPGAGIGAATGTGGSSEPSACSDHP 249
Q + AA G GAG G GGS A
Sbjct: 179 DQFYEAAPGPPFAGPQPPPPPAPPQPEGAADKGDPRTGAG-----GGGGSPCTKATPGSE 233
Query: 250 IPGCSLKEEEKQHSQPQQQQLDPNNPAANWIHARSTRKKRCPYTKYQTLELEKEFLFNMY 309
G + P + + ++ A + + +RKKRCPYTKYQ ELE+EF FN+Y
Sbjct: 234 PKGAAEGSGGDGEGPPGEAGAEKSSSA---VAPQRSRKKRCPYTKYQIRELEREFFFNVY 290
Query: 310 LTRDRRYEVARILNLTERQVKIWFQNRRMKMKKMSKEK 347
+ +++R +++R+LNLT+RQVKIWFQNRRMK KK+++++
Sbjct: 291 INKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKLNRDR 328
>gi|24497517 homeobox A5 [Homo sapiens]
Length = 270
Score = 107 bits (267), Expect = 2e-23
Identities = 84/229 (36%), Positives = 105/229 (45%), Gaps = 29/229 (12%)
Query: 134 GGGGGGGPGRGPSPGPSGPANGRHYGIKPETRAAPAPATAASTTSS-SSTSLSSSSKRTE 192
G G G G S G SG H+G R+ A A+AA S + S+ S + +
Sbjct: 43 GRYGYGYNGMDLSVGRSGSG---HFGSGERARSYAASASAAPAEPRYSQPATSTHSPQPD 99
Query: 193 ---CSVARESQGSSGPEFSCNSFLQEKAAAATGGT-------GPGAGIGAATGTGGSSEP 242
CS S GS NS A+A G+ G G GA SSE
Sbjct: 100 PLPCSAVAPSPGSDSHHGGKNSLSNSSGASADAGSTHISSREGVGTASGAEEDAPASSEQ 159
Query: 243 SACSDHPIPGCSLKEEEKQHSQPQQQQLDPNNPAANWIHAR----STRKKRCPYTKYQTL 298
++ P P + P Q Q+ P + H ++ R YT+YQTL
Sbjct: 160 ASAQSEPSP-----------APPAQPQIYPWMRKLHISHDNIGGPEGKRARTAYTRYQTL 208
Query: 299 ELEKEFLFNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKKMSKEK 347
ELEKEF FN YLTR RR E+A L L+ERQ+KIWFQNRRMK KK +K K
Sbjct: 209 ELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLK 257
Score = 32.3 bits (72), Expect = 0.66
Identities = 39/172 (22%), Positives = 59/172 (34%), Gaps = 15/172 (8%)
Query: 7 GRLKMSSSGTLSNYYVDSLIGHEGDEVFAARFGPPGPGAQGRPAGVADGPAATAAEFASC 66
GR L NY S + + + + G G G G V + + F S
Sbjct: 11 GRYPNGPDYQLHNYGDHSSVSEQFRDSASMHSGRYGYGYNGMDLSVG---RSGSGHFGS- 66
Query: 67 SFAPRSAVFSASWSAVPSQPPAAAAMSGLYHPYVPPPPLAASASEPGRYVRSWMEPLPGF 126
R+ ++AS SA P++P + + + P P P +A A PG
Sbjct: 67 --GERARSYAASASAAPAEPRYSQPATSTHSPQPDPLPCSAVAPSPGS---------DSH 115
Query: 127 PGGAGGGGGGGGGGPGRGPSPGPSGPANGRHYGIKPETRAAPAPATAASTTS 178
GG G G + S G G + + A+ A+A S S
Sbjct: 116 HGGKNSLSNSSGASADAGSTHISSREGVGTASGAEEDAPASSEQASAQSEPS 167
>gi|5031759 homeobox A11 [Homo sapiens]
Length = 313
Score = 106 bits (265), Expect = 3e-23
Identities = 56/137 (40%), Positives = 83/137 (60%), Gaps = 16/137 (11%)
Query: 217 AAAATGGTGPGAGIGAATGTGGSSEPSACSDHPIPGCSLKEEEKQHSQPQQQQLDPNNPA 276
AAAA TG A + +G GG +A + EEK+ + + P + +
Sbjct: 177 AAAAAAATGAPATSSSDSGGGGGCRETAAA----------AEEKERRRRPESSSSPESSS 226
Query: 277 ------ANWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARILNLTERQVK 330
A + TRKKRCPYTKYQ ELE+EF F++Y+ +++R +++R+LNLT+RQVK
Sbjct: 227 GHTEDKAGGSSGQRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQVK 286
Query: 331 IWFQNRRMKMKKMSKEK 347
IWFQNRRMK KK+++++
Sbjct: 287 IWFQNRRMKEKKINRDR 303
>gi|89257348 homeo box HB9 [Homo sapiens]
Length = 401
Score = 105 bits (263), Expect = 5e-23
Identities = 100/314 (31%), Positives = 130/314 (41%), Gaps = 34/314 (10%)
Query: 40 PPGPGAQGRPAGVADGPAATAAEFASCSFAP-RSAVFSASWSAVPSQPPAAAAMSGLYHP 98
P AQ P + AA A+ S S S S S+PPAA A
Sbjct: 18 PRAASAQSAPLALVTSLAAAASGTGGGGGGGGASGGTSGSCSPASSEPPAAPADRLRAES 77
Query: 99 YVPPPPLAASASEPGRYVRSWMEPLPGFPGGAGGGGGGGGGGPGRGPSPGPSGPANGRHY 158
PP LAA + + P PGF G AGGGGGG GGG G G H+
Sbjct: 78 PSPPRLLAAHCA---------LLPKPGFLG-AGGGGGGTGGGHG------------GPHH 115
Query: 159 GIKPETRAAPAPATAASTTSSSSTSLSSSSKRTECSVARESQGSSGPEFSCNSFLQEKAA 218
P AA A A AA+ + L + + ++ P + ++ AA
Sbjct: 116 HAHPGAAAAAAAAAAAAAAGGLALGLHPGGAQGGAGLPAQAALYGHPVYGYSA---AAAA 172
Query: 219 AATGGTGPGAGIGAATGTGGSSEPSACSDHPIPGCSLKEEEKQHSQPQQQQLDPNNPAAN 278
AA G P G + P+ +D G + ++ + P P N
Sbjct: 173 AALAGQHPALSYSYPQVQG--AHPAHPADPIKLGAGTFQLDQWLRASTAGMILPKMPDFN 230
Query: 279 WIHARST-----RKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARILNLTERQVKIWF 333
A+S R+ R +T Q LELE +F N YL+R +R+EVA L LTE QVKIWF
Sbjct: 231 -SQAQSNLLGKCRRPRTAFTSQQLLELEHQFKLNKYLSRPKRFEVATSLMLTETQVKIWF 289
Query: 334 QNRRMKMKKMSKEK 347
QNRRMK K+ K K
Sbjct: 290 QNRRMKWKRSKKAK 303
Score = 34.3 bits (77), Expect = 0.17
Identities = 21/73 (28%), Positives = 36/73 (49%)
Query: 186 SSSKRTECSVARESQGSSGPEFSCNSFLQEKAAAATGGTGPGAGIGAATGTGGSSEPSAC 245
S + R + +A + ++ + + + + AAAA+G G G G GA+ GT GS P++
Sbjct: 4 SKNFRIDALLAVDPPRAASAQSAPLALVTSLAAAASGTGGGGGGGGASGGTSGSCSPASS 63
Query: 246 SDHPIPGCSLKEE 258
P L+ E
Sbjct: 64 EPPAAPADRLRAE 76
>gi|24497556 homeobox A7 [Homo sapiens]
Length = 230
Score = 100 bits (249), Expect = 2e-21
Identities = 69/185 (37%), Positives = 90/185 (48%), Gaps = 19/185 (10%)
Query: 179 SSSTSLSSSSKRTECSVARESQGSSGPE------------FSCNSFLQEKAAAATGGTGP 226
++ SL +++ T CS A SQ S ++ NS L + A+ G G
Sbjct: 15 TAGASLFQNAEPTSCSFAPNSQRSGYGAGAGAFASTVPGLYNVNSPLYQSPFASGYGLGA 74
Query: 227 GAGIGAATGTGGSSEPSACSDHPIPGCSLKEEEKQHSQPQQQQLDPNNPAANWIHARSTR 286
A + + P CSD C +E H + N W+ +
Sbjct: 75 DAYGNLPCASYDQNIPGLCSDLAKGACDKTDEGALHGAAEA-----NFRIYPWMRSSGPD 129
Query: 287 KKRC--PYTKYQTLELEKEFLFNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKKMS 344
+KR YT+YQTLELEKEF FN YLTR RR E+A L LTERQ+KIWFQNRRMK KK
Sbjct: 130 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEH 189
Query: 345 KEKCP 349
K++ P
Sbjct: 190 KDEGP 194
>gi|7657166 homeobox C11 [Homo sapiens]
Length = 304
Score = 100 bits (249), Expect = 2e-21
Identities = 53/133 (39%), Positives = 83/133 (62%), Gaps = 19/133 (14%)
Query: 226 PGAGIGAATGTGGSSEPSACSDHPIPGCSLKEEEKQHSQPQQQQLDPNNPAANWIHARS- 284
P +G G A G EP A P G + + E ++ +++ +P++ + A+
Sbjct: 170 PCSGKGEAKG-----EPEA---PPASGLASRAEAGAEAEAEEENTNPSSSGSAHSVAKEP 221
Query: 285 ----------TRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARILNLTERQVKIWFQ 334
TRKKRCPY+K+Q ELE+EF FN+Y+ +++R +++R+LNLT+RQVKIWFQ
Sbjct: 222 AKGAAPNAPRTRKKRCPYSKFQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQ 281
Query: 335 NRRMKMKKMSKEK 347
NRRMK KK+S+++
Sbjct: 282 NRRMKEKKLSRDR 294
>gi|85068580 homeobox B7 [Homo sapiens]
Length = 217
Score = 99.8 bits (247), Expect = 3e-21
Identities = 69/185 (37%), Positives = 87/185 (47%), Gaps = 13/185 (7%)
Query: 178 SSSSTSLSSSSKRTECSVARESQGSSGPEFSCNSFLQEKAAAATGGTG-PGAGIGAATGT 236
SSS + + ++T C+ A Q S SF GG G G
Sbjct: 17 SSSVFATGAFPEQTSCAFASNPQRPGYGAGSGASFAASMQGLYPGGGGMAGQSAAGVYAA 76
Query: 237 GGSSEPSACSDH----------PIPGCSLKEEEKQHSQPQQQQLDPNNPAANWIHARSTR 286
G EPS+ + H PG S K + + + N W+ + T
Sbjct: 77 GYGLEPSSFNMHCAPFEQNLSGVCPGDSAKAAGAKEQRDSDLAAESNFRIYPWMRSSGTD 136
Query: 287 KKRC--PYTKYQTLELEKEFLFNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKKMS 344
+KR YT+YQTLELEKEF +N YLTR RR E+A L LTERQ+KIWFQNRRMK KK +
Sbjct: 137 RKRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHTLCLTERQIKIWFQNRRMKWKKEN 196
Query: 345 KEKCP 349
K P
Sbjct: 197 KTAGP 201
>gi|11321638 homeobox C5 [Homo sapiens]
Length = 222
Score = 99.8 bits (247), Expect = 3e-21
Identities = 63/141 (44%), Positives = 75/141 (53%), Gaps = 10/141 (7%)
Query: 217 AAAATGGTGPGAGIGAATGTGGSSEPSA---CSDHPIPGCSLKEEEKQHSQPQQQQLDPN 273
+AAA G PG A G S+ +A + +KEE+ Q QP P
Sbjct: 77 SAAAAPGHAPGRDEAAPLNPGMYSQKAARPALEERAKSSGEIKEEQAQTGQPAGLSQPPA 136
Query: 274 NPAAN-WI------HARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARILNLTE 326
P W+ H ++ R YT+YQTLELEKEF FN YLTR RR E+A L L E
Sbjct: 137 PPQIYPWMTKLHMSHETDGKRSRTSYTRYQTLELEKEFHFNRYLTRRRRIEIANNLCLNE 196
Query: 327 RQVKIWFQNRRMKMKKMSKEK 347
RQ+KIWFQNRRMK KK SK K
Sbjct: 197 RQIKIWFQNRRMKWKKDSKMK 217
>gi|13489077 homeobox A6 [Homo sapiens]
Length = 233
Score = 98.2 bits (243), Expect = 1e-20
Identities = 66/181 (36%), Positives = 93/181 (51%), Gaps = 5/181 (2%)
Query: 168 PAPATAASTTSSSSTSLSSSSKRTECSVARESQGSSGPEFSCNSFLQEKAAAATGGTGPG 227
P PA+ +++ T S + SV ++ S E+ + F +K + +G G
Sbjct: 37 PFPASYGASSLPDKTYTSPCFYQQSNSVLACNRASY--EYGASCFYSDKDLSGASPSGSG 94
Query: 228 AGIGAATGTGGSSEPSACSDHPI-PGCSLKEE--EKQHSQPQQQQLDPNNPAANWIHARS 284
G S E D G +L +E +++++ P + N A ++
Sbjct: 95 KQRGPGDYLHFSPEQQYKPDSSSGQGKALHDEGADRKYTSPVYPWMQRMNSCAGAVYGSH 154
Query: 285 TRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKKMS 344
R+ R YT+YQTLELEKEF FN YLTR RR E+A L LTERQ+KIWFQNRRMK KK +
Sbjct: 155 GRRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKEN 214
Query: 345 K 345
K
Sbjct: 215 K 215
>gi|84570137 homeobox B3 [Homo sapiens]
Length = 431
Score = 97.1 bits (240), Expect = 2e-20
Identities = 92/281 (32%), Positives = 117/281 (41%), Gaps = 61/281 (21%)
Query: 88 AAAAMSGLYHPY---------VPP-PPLAASASEPGRYVRSW--MEPLPGF-PGGAGGGG 134
AAAA+ G Y Y VPP PP A+ G Y RS ++ L P
Sbjct: 10 AAAALFGGYSSYPGSNGFGFDVPPQPPFQAATHLEGDYQRSACSLQSLGNAAPHAKSKEL 69
Query: 135 GGGGGGPGRGPSPGPSGPANGRHYGIKPETRAAPAPATAASTTSSSSTSLSSSSKRTECS 194
G PG P P + P + P AAP AT+ +SS+ S S +C
Sbjct: 70 NGSCMRPGLAPEPLSAPPGS-------PPPSAAPTSATS----NSSNGGGPSKSGPPKCG 118
Query: 195 VARESQGSSG-----PEFSCNSFLQEKA---AAATGGTGPGAGIGAATGTGGSSEPSACS 246
S + E S L+ + A GG G G G G + G+GG
Sbjct: 119 PGTNSTLTKQIFPWMKESRQTSKLKNNSPGTAEGCGGGGGGGGGGGSGGSGGGGGGGGGG 178
Query: 247 DHPIPGCSLKEEEKQHSQPQQQQLDPNNPAANWIHARSTRKKRCPYTKYQTLELEKEFLF 306
D PG + ++++ R YT Q +ELEKEF F
Sbjct: 179 DKSPPGSA-----------------------------ASKRARTAYTSAQLVELEKEFHF 209
Query: 307 NMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKKMSKEK 347
N YL R RR E+A +LNL+ERQ+KIWFQNRRMK KK K K
Sbjct: 210 NRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQKAK 250
Score = 40.4 bits (93), Expect = 0.002
Identities = 44/145 (30%), Positives = 56/145 (38%), Gaps = 27/145 (18%)
Query: 44 GAQGRPAGVADGPAATAAEFASCSFAPRSAVFSASWSAVPSQPPAAAAMSGLYHPYVPPP 103
G+ RP G+A P + S AP SA ++S PS+ SG PP
Sbjct: 71 GSCMRP-GLAPEPLSAPPGSPPPSAAPTSATSNSSNGGGPSK-------SG------PPK 116
Query: 104 PLAASASEPGRYVRSWMEPL----------PGFPGGAGGGGGGGGGGPGRGPSPGPSGPA 153
+ S + + WM+ PG G GGGGGGGGGG G G G
Sbjct: 117 CGPGTNSTLTKQIFPWMKESRQTSKLKNNSPGTAEGCGGGGGGGGGGGSGGSGGGGGGGG 176
Query: 154 NGRHYGIKPETRAAPAPATAASTTS 178
G P AA A A T++
Sbjct: 177 GGDK---SPPGSAASKRARTAYTSA 198
>gi|4504469 homeobox B5 [Homo sapiens]
Length = 269
Score = 94.7 bits (234), Expect = 1e-19
Identities = 74/205 (36%), Positives = 103/205 (50%), Gaps = 19/205 (9%)
Query: 153 ANGRHYGIKPET-RAAPAPATAASTTSSSSTSLSSSSKRTECSVARESQGSSGPEFSCNS 211
A+ H+G E+ RA PAPA ++S+ SS + C+ + S G + S +S
Sbjct: 61 ASSSHFGAVGESSRAFPAPAQEPRFRQAASSCSLSSPESLPCT----NGDSHGAKPSASS 116
Query: 212 FLQEKAAAATGGTGPGAGIGAATGTGGSSEPS-ACSDHPIPGCSLKEEEKQHS-----QP 265
+ +A++ A SSEP A S P + + E + +
Sbjct: 117 PSDQATSASSS-----ANFTEIDEASASSEPEEAASQLSSPSLARAQPEPMATSTAAPEG 171
Query: 266 QQQQLDPNNPAANWIHARST---RKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARIL 322
Q Q+ P + H + ++ R YT+YQTLELEKEF FN YLTR RR E+A L
Sbjct: 172 QTPQIFPWMRKLHISHDMTGPDGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHAL 231
Query: 323 NLTERQVKIWFQNRRMKMKKMSKEK 347
L+ERQ+KIWFQNRRMK KK +K K
Sbjct: 232 CLSERQIKIWFQNRRMKWKKDNKLK 256
>gi|12056969 homeobox C8 [Homo sapiens]
Length = 242
Score = 94.0 bits (232), Expect = 2e-19
Identities = 56/105 (53%), Positives = 66/105 (62%), Gaps = 8/105 (7%)
Query: 251 PGCSLKEEEKQHSQPQQQQLDPNNPAA---NWI--HARSTRKKRCPYTKYQTLELEKEFL 305
P C K +S Q L+ N+ + W+ HA R R Y++YQTLELEKEFL
Sbjct: 112 PDC--KSSANTNSSEGQGHLNQNSSPSLMFPWMRPHAPGRRSGRQTYSRYQTLELEKEFL 169
Query: 306 FNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKK-MSKEKCP 349
FN YLTR RR EV+ L LTERQVKIWFQNRRMK KK +K+K P
Sbjct: 170 FNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDKLP 214
>gi|23503237 homeobox B6 [Homo sapiens]
Length = 224
Score = 93.6 bits (231), Expect = 2e-19
Identities = 62/163 (38%), Positives = 81/163 (49%), Gaps = 40/163 (24%)
Query: 223 GTGPGAGIGAATGT------GGSSEPSACSDHPIPG--------CSLKEEEKQ---HSQP 265
G GPG G AT + GG + C P P C+L ++Q H +P
Sbjct: 44 GPGPGQDKGFATSSYYPPAGGGYGRAAPCDYGPAPAFYREKESACALSGADEQPPFHPEP 103
Query: 266 QQ-------------QQLDPNNPAANWIHARST----------RKKRCPYTKYQTLELEK 302
++ ++ + P W+ ++ R+ R YT+YQTLELEK
Sbjct: 104 RKSDCAQDKSVFGETEEQKCSTPVYPWMQRMNSCNSSSFGPSGRRGRQTYTRYQTLELEK 163
Query: 303 EFLFNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKKMSK 345
EF +N YLTR RR E+A L LTERQ+KIWFQNRRMK KK SK
Sbjct: 164 EFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKESK 206
>gi|13273317 homeobox B8 [Homo sapiens]
Length = 243
Score = 93.2 bits (230), Expect = 3e-19
Identities = 54/98 (55%), Positives = 62/98 (63%), Gaps = 10/98 (10%)
Query: 256 KEEEKQHSQPQQQQLDPNNPAANWIH---ARSTRKKRCPYTKYQTLELEKEFLFNMYLTR 312
+E E P QL P W+ A R+ R Y++YQTLELEKEFLFN YLTR
Sbjct: 120 EEAEGSEQSPSPTQLFP------WMRPQAAAGRRRGRQTYSRYQTLELEKEFLFNPYLTR 173
Query: 313 DRRYEVARILNLTERQVKIWFQNRRMKMKK-MSKEKCP 349
RR EV+ L LTERQVKIWFQNRRMK KK +K+K P
Sbjct: 174 KRRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDKFP 211
>gi|19923391 homeobox D3 [Homo sapiens]
Length = 432
Score = 90.5 bits (223), Expect = 2e-18
Identities = 86/294 (29%), Positives = 114/294 (38%), Gaps = 75/294 (25%)
Query: 63 FASCSFAPRSAVFSASWSAVPSQPPAAAAMSGLYHP-----YVPPPPLAASASEPGRYVR 117
F ++ + + S P PPAAA+ +P PL A A +
Sbjct: 29 FGGYGYSKTTDTYGYSTPHQPYPPPAAASSLDTDYPGSACSIQSSAPLRAPAHKGAELNG 88
Query: 118 SWMEPLPGFPGGAGGG----GGGGGGGPGRGPSPGPSGPANGRHYGIKPETRAAPAPATA 173
S M P G G GGG G P + P P P+ P + P PA
Sbjct: 89 SCMRPGTGNSQGGGGGSQPPGLNSEQQPPQPPPPPPTLPPS------SPTNPGGGVPAKK 142
Query: 174 ASTTSSSSTSLSSSSKRTECSVARESQGSSGPEFSCNSFLQEKAAAATGGTGPGAGIGAA 233
++S+S ++ SK+ + Q S ++K + AT G
Sbjct: 143 PKGGPNASSSSATISKQIFPWMKESRQNS-----------KQKNSCATAG---------- 181
Query: 234 TGTGGSSEPSACSDHPIPGCSLKEEEKQHSQPQQQQLDPNNPAANWIHARSTRKKRCPYT 293
+C D PG PA +++ R YT
Sbjct: 182 ---------ESCEDKSPPG----------------------PA--------SKRVRTAYT 202
Query: 294 KYQTLELEKEFLFNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKKMSKEK 347
Q +ELEKEF FN YL R RR E+A +LNLTERQ+KIWFQNRRMK KK K K
Sbjct: 203 SAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKAK 256
>gi|23397672 homeobox D4 [Homo sapiens]
Length = 255
Score = 89.7 bits (221), Expect = 3e-18
Identities = 60/159 (37%), Positives = 70/159 (44%), Gaps = 30/159 (18%)
Query: 222 GGTGPGAGIGAATGTGGSSEPSACSDH-----------------PIPGCSLKEEEKQHSQ 264
GG+GPG G A G EP H P+PG +
Sbjct: 63 GGSGPGPG-SALPARGHGQEPGGPGGHYAAPGEPCPAPPAPPPAPLPGARAYSQSDPKQP 121
Query: 265 PQQQQLDPNNPAANW---IHARST---------RKKRCPYTKYQTLELEKEFLFNMYLTR 312
P L W +H S ++ R YT+ Q LELEKEF FN YLTR
Sbjct: 122 PSGTALKQPAVVYPWMKKVHVNSVNPNYTGGEPKRSRTAYTRQQVLELEKEFHFNRYLTR 181
Query: 313 DRRYEVARILNLTERQVKIWFQNRRMKMKKMSKEKCPKG 351
RR E+A L L+ERQ+KIWFQNRRMK KK K KG
Sbjct: 182 RRRIEIAHTLCLSERQIKIWFQNRRMKWKKDHKLPNTKG 220
Score = 32.7 bits (73), Expect = 0.50
Identities = 33/99 (33%), Positives = 34/99 (34%), Gaps = 16/99 (16%)
Query: 83 PSQPPAAAAMSGLY-----HPYVPPPPLAASASEPGRYVRSWMEPLPGFPGGAGGGGGGG 137
P PP + G Y Y A PG Y P P F GG G G
Sbjct: 15 PKFPPCEEYLQGGYLGEQGADYYGGGAQGADFQPPGLY------PRPDFGEQPFGGSGPG 68
Query: 138 GGG--PGRGPSPGPSGPANGRHYGIKPE-TRAAPAPATA 173
G P RG P GP G HY E A PAP A
Sbjct: 69 PGSALPARGHGQEPGGP--GGHYAAPGEPCPAPPAPPPA 105
>gi|27804315 homeobox C12 [Homo sapiens]
Length = 282
Score = 89.4 bits (220), Expect = 5e-18
Identities = 99/344 (28%), Positives = 132/344 (38%), Gaps = 83/344 (24%)
Query: 11 MSSSGTLSNYYVDSLIG-HEGDEVFAARFGPPGPGAQGRPAGVADGPAATAAEFASCSFA 69
M L+ +V L+ H GD + F G G P S S+
Sbjct: 1 MGEHNLLNPGFVGPLVNIHTGDTFYFPNFRASGAQLPGLP---------------SLSYP 45
Query: 70 PRSAVFSASWSAVPSQPPAAAAMSGLYHPYVPPPPLAASASEP-GRYVR-SWMEPLPGF- 126
R V S SW P+A +G PY+ P S + P GR + +E G+
Sbjct: 46 RRDNVCSLSW-------PSAEPCNGYPQPYLGSP---VSLNPPFGRTCELARVEDGKGYY 95
Query: 127 --PGGAGGGGGGGGGGPGRGPSPGPSGPANGRHYGIKPETRAAPAPATAASTTSSSSTSL 184
P GGGGG GR P GP A S +L
Sbjct: 96 REPCAEGGGGGLKREERGRDPGAGPG--------------------AALLPLEPSGPPAL 135
Query: 185 SSSSKRTECSVARESQGSSGPEF---SCNSFLQEKAAAATGGTGPGAGIGAATGTGGSSE 241
+ G +GP SC S + +++ GAG G +
Sbjct: 136 GFKYDYAAGGGGGDGGGGAGPPHDPPSCQSLESDSSSSLLNEGNKGAGAG---------D 186
Query: 242 PSACSDHPIPGCSLKEEEKQHSQPQQQQLDPNNPAANW--IHARSTRKKRCPYTKYQTLE 299
P + PG L A W I++RS RKKR PY+K Q E
Sbjct: 187 PGSLVSPLNPGGGLSAS-----------------GAPWYPINSRS-RKKRKPYSKLQLAE 228
Query: 300 LEKEFLFNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKKM 343
LE EFL N ++TR RR E++ LNL+++QVKIWFQNRRMK K++
Sbjct: 229 LEGEFLVNEFITRQRRRELSDRLNLSDQQVKIWFQNRRMKKKRL 272
>gi|24497536 homeobox C13 [Homo sapiens]
Length = 330
Score = 89.0 bits (219), Expect = 6e-18
Identities = 88/299 (29%), Positives = 114/299 (38%), Gaps = 79/299 (26%)
Query: 128 GGAGGGGGGGGGG---------PGRGPS-------------------------PGPSGPA 153
GG GGGGGGG GG PG+ PS P P G
Sbjct: 29 GGGGGGGGGGTGGAGGGCSGASPGKAPSMDGLGSSCPASHCRDLLPHPVLGRPPAPLGAP 88
Query: 154 NGRHYGIKPETRAA------PAPATAASTTSSSSTSLSSSSKRTECSVARESQ------- 200
G Y P AA PAP T++S T S S Q
Sbjct: 89 QGAVYTDIPAPEAARQCAPPPAPPTSSSATLGYGYPFGGSYYGCRLSHNVNLQQKPCAYH 148
Query: 201 -GSSGPEFS-----------CNSFLQEKAAAATGGTGPG-AGIGAATGTGGSSEPSACSD 247
G PE S F + A++ PG + G G EP +
Sbjct: 149 PGDKYPEPSGALPGDDLSSRAKEFAFYPSFASSYQAMPGYLDVSVVPGISGHPEPRHDAL 208
Query: 248 HPIPG---------------CSLKEEEKQHSQPQQ-QQLDPNNPAANWIHARSTRKKRCP 291
P+ G CS ++ + H + P P + R RKKR P
Sbjct: 209 IPVEGYQHWALSNGWDSQVYCSKEQSQSAHLWKSPFPDVVPLQPEVS--SYRRGRKKRVP 266
Query: 292 YTKYQTLELEKEFLFNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKK-MSKEKCP 349
YTK Q ELEKE+ + ++T+++R ++ NL+ERQV IWFQNRR+K KK +SK K P
Sbjct: 267 YTKVQLKELEKEYAASKFITKEKRRRISATTNLSERQVTIWFQNRRVKEKKVVSKSKAP 325
>gi|24497554 homeobox A13 [Homo sapiens]
Length = 388
Score = 88.6 bits (218), Expect = 8e-18
Identities = 96/340 (28%), Positives = 136/340 (40%), Gaps = 38/340 (11%)
Query: 35 AARFGPPGPGAQGRPAGVADGPAATAAEFASCSFAPRSAVFSASWSAVPSQPPAAAAMSG 94
AA G G G A A G + AA A+ + A + + P P AA+A S
Sbjct: 48 AAAAGAGGGGFPHPAAAAAGGNFSVAAAAAAAAAAAANQCRNLMAHPAPLAPGAASAYSS 107
Query: 95 LYHPYVPPPPLAASASEPGRYVRSWMEPLPGFPGGAGGGGGGGGG--GPGRGPSPGPSGP 152
PP AA+A+ + G PG AG G P + SGP
Sbjct: 108 APGE-APPSAAAAAAAAAAAAAAAAAASSSGGPGPAGPAGAEAAKQCSPCSAAAQSSSGP 166
Query: 153 ANGRH----YGIKPETRAAPAP---ATAASTTSSSSTSLSSSSKRTECSVARESQGSSGP 205
A + G P R P P + A S+++ + + A E S
Sbjct: 167 AALPYGYFGSGYYPCARMGPHPNAIKSCAQPASAAAAAAFADKYMDTAGPAAEEFSSRAK 226
Query: 206 EFSCNSFLQEKAAAATGGTGPGAG---IGAATGTGGSSEPSACSDHPIPGCSLKEEEK-- 260
EF+ + Q AA P G + G GG E S H G ++ +
Sbjct: 227 EFAF--YHQGYAAGPYHHHQPMPGYLDMPVVPGLGGPGE----SRHEPLGLPMESYQPWA 280
Query: 261 -------QHSQPQQQQLDPN----------NPAANWIHARSTRKKRCPYTKYQTLELEKE 303
Q P++Q P+ + ++ R RKKR PYTK Q ELE+E
Sbjct: 281 LPNGWNGQMYCPKEQAQPPHLWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELERE 340
Query: 304 FLFNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKKM 343
+ N ++T+D+R ++ NL+ERQV IWFQNRR+K KK+
Sbjct: 341 YATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 380
Score = 35.8 bits (81), Expect = 0.059
Identities = 35/155 (22%), Positives = 54/155 (34%), Gaps = 5/155 (3%)
Query: 93 SGLYHP-YVPPPPLAASASEPGRYVRSWMEPLPGFPGGAGGGGGGGGGGPGRGPSPGPSG 151
S L HP ++ P + + G + + G A G G G P P+
Sbjct: 4 SVLLHPRWIEPTVMFLYDNGGGLVADELNKNMEGAAAAAAAAAAAAAAGAGGGGFPHPAA 63
Query: 152 PANGRHYGIKPETRAAPAPATAASTTSSSSTSLSSSSKRTECSVARESQGSSGPEFSCNS 211
A G ++ + AA A A AA+ + + + S + G + P + +
Sbjct: 64 AAAGGNFSV---AAAAAAAAAAAANQCRNLMAHPAPLAPGAASAYSSAPGEAPPSAAAAA 120
Query: 212 FLQEKAAAATGGTGPGAGIGAATGTGGSSEPSACS 246
AAAA G G A G G+ CS
Sbjct: 121 AAAAAAAAAAAAASSSGGPGPA-GPAGAEAAKQCS 154
>gi|15029506 homeobox D8 [Homo sapiens]
Length = 290
Score = 87.8 bits (216), Expect = 1e-17
Identities = 46/69 (66%), Positives = 53/69 (76%), Gaps = 1/69 (1%)
Query: 282 ARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMK 341
A R+ R Y+++QTLELEKEFLFN YLTR RR EV+ L LTERQVKIWFQNRRMK K
Sbjct: 194 APGRRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALALTERQVKIWFQNRRMKWK 253
Query: 342 K-MSKEKCP 349
K +K+K P
Sbjct: 254 KENNKDKFP 262
>gi|4758554 homeobox C6 isoform 1 [Homo sapiens]
Length = 235
Score = 87.8 bits (216), Expect = 1e-17
Identities = 60/146 (41%), Positives = 81/146 (55%), Gaps = 14/146 (9%)
Query: 202 SSGP-EFSCNSFLQEKAAAATGGTGPGAGIGAATGTGGSSEPSACSDHPIPGCSLKEEEK 260
S GP ++ NSF QEK + +G T T + + S+ P +++K
Sbjct: 66 SRGPYDYGSNSFYQEKDMLSNCRQNT---LGHNTQTSIAQDFSSEQGRTAP-----QDQK 117
Query: 261 QHSQ--PQQQQLDPNNPAANWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEV 318
Q P Q+++ ++ + R+ R Y++YQTLELEKEF FN YLTR RR E+
Sbjct: 118 ASIQIYPWMQRMNSHSGVG---YGADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEI 174
Query: 319 ARILNLTERQVKIWFQNRRMKMKKMS 344
A L LTERQ+KIWFQNRRMK KK S
Sbjct: 175 ANALCLTERQIKIWFQNRRMKWKKES 200
>gi|4758710 mesenchyme homeobox 1 isoform 1 [Homo sapiens]
Length = 254
Score = 87.8 bits (216), Expect = 1e-17
Identities = 69/210 (32%), Positives = 98/210 (46%), Gaps = 17/210 (8%)
Query: 142 GRGPSPGPSGPANGRHYGIKPETRAAPAPATAASTTSSSSTSLSSSSKRTECSVARESQG 201
G G S P P + KP+ A ATAA S+S ++ + Q
Sbjct: 29 GNGASGLPHYPPTPFSFHQKPDFLAT---ATAAYPDFSASCLAATPHSLPQEEHIFTEQH 85
Query: 202 SSGPEFSCNSFLQEKAAAATGGTGPGAG--------IGAATGTGGSSEPSACSDHPIPGC 253
+ P+ S N A +GP G +G TGG + D+ + G
Sbjct: 86 PAFPQ-SPNWHFPVSDARRRPNSGPAGGSKEMGTSSLGLVDTTGGPGD-----DYGVLGS 139
Query: 254 SLKEEEKQHSQPQQQQLDPNNPAANWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRD 313
+ E EK+ S+ +++ D + RK+R +TK Q ELE EF + YLTR
Sbjct: 140 TANETEKKSSRRRKESSDNQENRGKPEGSSKARKERTAFTKEQLRELEAEFAHHNYLTRL 199
Query: 314 RRYEVARILNLTERQVKIWFQNRRMKMKKM 343
RRYE+A L+L+ERQVK+WFQNRRMK K++
Sbjct: 200 RRYEIAVNLDLSERQVKVWFQNRRMKWKRV 229
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.129 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,264,808
Number of Sequences: 37866
Number of extensions: 1311303
Number of successful extensions: 30208
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 1210
Number of HSP's that attempted gapping in prelim test: 10775
Number of HSP's gapped (non-prelim): 10373
length of query: 352
length of database: 18,247,518
effective HSP length: 103
effective length of query: 249
effective length of database: 14,347,320
effective search space: 3572482680
effective search space used: 3572482680
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.