Guide to the Human Genome
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Name: PDPR Sequence: fasta or formatted (879aa) NCBI GI: 194306651
Description:

pyruvate dehydrogenase phosphatase regulatory subunit

Referenced in:

Serine / Threonine Protein Phosphatases
TCA Cycle

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         56           2
 C cysteine            1.7         15           2
 D aspartate           5.2         46           2
 E glutamate           6.5         57           2
 F phenylalanine       4.1         36           2
 G glycine             7.7         68           3
 H histidine           2.7         24           2
 I isoleucine          5.0         44           2
 K lysine              4.9         43           2
 L leucine            10.0         88           3
 M methionine          3.4         30           2
 N asparagine          3.5         31           2
 P proline             4.3         38           2
 Q glutamine           4.7         41           2
 R arginine            5.1         45           2
 S serine              6.9         61           2
 T threonine           5.1         45           2
 V valine              6.4         56           2
 W tryptophan          2.0         18           2
 Y tyrosine            4.2         37           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   pyruvate dehydrogenase phosphatase regulatory subun... 
SARDH                 0.228   sarcosine dehydrogenase precursor 
SARDH                 0.228   sarcosine dehydrogenase precursor 
DMGDH                 0.190   dimethylglycine dehydrogenase precursor 
PIPOX                 0.021   pipecolic acid oxidase 
AMT                   0.020   aminomethyltransferase 
FOXRED1               0.018   FAD-dependent oxidoreductase domain containing 1 [Hom...
L2HGDH                0.012   L-2-hydroxyglutarate dehydrogenase precursor 
SMOX                  0.004   spermine oxidase isoform 4 
SMOX                  0.004   spermine oxidase isoform 3 
SMOX                  0.004   spermine oxidase isoform 2 
SMOX                  0.004   spermine oxidase isoform 1 
ZMYM5                 0.004   zinc finger protein 237 isoform 3 
COQ6                  0.004   coenzyme Q6 homolog isoform a 
LOC100292512          0.003   PREDICTED: similar to Putative 3-beta-HSD family pr...
LOC100291543          0.003   PREDICTED: hypothetical protein XP_002347673 
LOC100288072          0.003   PREDICTED: hypothetical protein XP_002343493 
PPOX                  0.003   protoporphyrinogen oxidase 
PPOX                  0.003   protoporphyrinogen oxidase 
EML6                  0.003   echinoderm microtubule associated protein like 6 [H...
WWTR1                 0.003   WW domain containing transcription regulator 1 [Homo...
LOC730275             0.003   PREDICTED: hypothetical protein 
LOC730275             0.003   PREDICTED: hypothetical protein 
OR13F1                0.003   olfactory receptor, family 13, subfamily F, member 1...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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