Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100291543 Sequence: fasta or formatted (422aa) NCBI GI: 239751020
Description:

PREDICTED: hypothetical protein XP_002347673

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.0         42           2
 C cysteine            1.2          5           1
 D aspartate           3.3         14           1
 E glutamate           5.2         22           2
 F phenylalanine       3.8         16           1
 G glycine             7.6         32           4
 H histidine           3.6         15           1
 I isoleucine          3.3         14           1
 K lysine              4.7         20           2
 L leucine            12.3         52           3
 M methionine          1.9          8           1
 N asparagine          1.9          8           1
 P proline             5.9         25           2
 Q glutamine           4.7         20           2
 R arginine            7.3         31           3
 S serine              5.5         23           2
 T threonine           5.5         23           2
 V valine              7.8         33           1
 W tryptophan          1.2          5           1
 Y tyrosine            3.3         14           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347673 
LOC100292512          1.000   PREDICTED: similar to Putative 3-beta-HSD family pr...
LOC100288072          0.996   PREDICTED: hypothetical protein XP_002343493 
SDR42E1               0.391   short chain dehydrogenase/reductase family 42E, mem...
NSDHL                 0.146   NAD(P) dependent steroid dehydrogenase-like 
NSDHL                 0.146   NAD(P) dependent steroid dehydrogenase-like 
HSD3B1                0.112   3 beta-hydroxysteroid dehydrogenase 1 
HSD3B7                0.106   hydroxy-delta-5-steroid dehydrogenase, 3 beta- and s...
HSD3B2                0.103   3 beta-hydroxysteroid dehydrogenase 2 
HSD3B7                0.043   hydroxy-delta-5-steroid dehydrogenase, 3 beta- and ...
HSD3B7                0.043   hydroxy-delta-5-steroid dehydrogenase, 3 beta- and ...
TGDS                  0.028   TDP-glucose 4,6-dehydratase 
GALE                  0.024   UDP-galactose-4-epimerase 
GALE                  0.024   UDP-galactose-4-epimerase 
GALE                  0.024   UDP-galactose-4-epimerase 
UXS1                  0.013   UDP-glucuronate decarboxylase 1 
NMRAL1                0.013   NmrA-like family domain containing 1 
DHRS3                 0.009   dehydrogenase/reductase (SDR family) member 3 
PDPR                  0.007   pyruvate dehydrogenase phosphatase regulatory subun...
HSD11B1               0.006   11-beta-hydroxysteroid dehydrogenase 1 
HSD11B1               0.006   11-beta-hydroxysteroid dehydrogenase 1 
HSD17B3               0.006   estradiol 17 beta-dehydrogenase 3 
H1F0                  0.006   H1 histone family, member 0 
ZNF831                0.006   zinc finger protein 831 
DMGDH                 0.005   dimethylglycine dehydrogenase precursor 
LMNB2                 0.005   lamin B2 
POU2F3                0.005   POU transcription factor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press