Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC400581 Sequence: fasta or formatted (118aa) NCBI GI: 193220941
Description:

hypothetical protein LOC400581

Referenced in:

Receptor Tyrosine Kinases

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9          7           1
 C cysteine            0.8          1           1
 D aspartate           3.4          4           2
 E glutamate           9.3         11           2
 F phenylalanine       4.2          5           1
 G glycine             7.6          9           1
 H histidine           2.5          3           1
 I isoleucine          5.1          6           1
 K lysine              5.9          7           1
 L leucine             9.3         11           1
 M methionine          2.5          3           1
 N asparagine          5.9          7           2
 P proline             5.1          6           1
 Q glutamine           3.4          4           1
 R arginine            7.6          9           1
 S serine             10.2         12           2
 T threonine           1.7          2           1
 V valine              4.2          5           1
 W tryptophan          1.7          2           1
 Y tyrosine            3.4          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC400581 
GRAP                  0.821   GRB2-related adaptor protein 
GRB2                  0.546   growth factor receptor-bound protein 2 isoform 1 [Hom...
GRAP2                 0.321   GRB2-related adaptor protein 2 
GRB2                  0.307   growth factor receptor-bound protein 2 isoform 2 [Ho...
NCK1                  0.257   NCK adaptor protein 1 
ABL1                  0.248   c-abl oncogene 1, receptor tyrosine kinase isoform a...
ABL1                  0.248   c-abl oncogene 1, receptor tyrosine kinase isoform b...
CSK                   0.248   c-src tyrosine kinase 
CSK                   0.248   c-src tyrosine kinase 
ABL2                  0.243   arg tyrosine kinase isoform c 
ABL2                  0.243   arg tyrosine kinase isoform b 
ABL2                  0.243   arg tyrosine kinase isoform e 
ABL2                  0.243   arg tyrosine kinase isoform d 
ABL2                  0.243   arg tyrosine kinase isoform a 
LCK                   0.239   lymphocyte-specific protein tyrosine kinase precurs...
LCK                   0.239   lymphocyte-specific protein tyrosine kinase precurs...
FRK                   0.234   fyn-related kinase 
FYN                   0.229   protein-tyrosine kinase fyn isoform c 
FYN                   0.229   protein-tyrosine kinase fyn isoform b 
FYN                   0.229   protein-tyrosine kinase fyn isoform a 
LYN                   0.225   Yamaguchi sarcoma viral (v-yes-1) oncogene homolog ...
LYN                   0.225   Yamaguchi sarcoma viral (v-yes-1) oncogene homolog is...
FGR                   0.220   proto-oncogene tyrosine-protein kinase FGR 
FGR                   0.220   proto-oncogene tyrosine-protein kinase FGR 
FGR                   0.220   proto-oncogene tyrosine-protein kinase FGR 
YES1                  0.220   viral oncogene yes-1 homolog 1 
NCK2                  0.216   NCK adaptor protein 2 isoform A 
NCK2                  0.216   NCK adaptor protein 2 isoform A 
SRC                   0.211   proto-oncogene tyrosine-protein kinase SRC 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press