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Search of human proteins with 190358517
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|190358517 RAB11B, member RAS oncogene family [Homo sapiens]
(218 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|190358517 RAB11B, member RAS oncogene family [Homo sapiens] 434 e-122
gi|4758984 Ras-related protein Rab-11A [Homo sapiens] 387 e-108
gi|116812567 RAB25 [Homo sapiens] 247 5e-66
gi|21361884 RAB2B protein isoform 1 [Homo sapiens] 192 2e-49
gi|4506365 RAB2A, member RAS oncogene family [Homo sapiens] 190 7e-49
gi|19923483 GTPase Rab14 [Homo sapiens] 185 3e-47
gi|13569962 RAB1B, member RAS oncogene family [Homo sapiens] 184 5e-47
gi|4758988 RAB1A, member RAS oncogene family isoform 1 [Homo sap... 181 4e-46
gi|7706563 RAB8B, member RAS oncogene family [Homo sapiens] 180 7e-46
gi|50234889 RAB43 protein [Homo sapiens] 179 2e-45
gi|82659107 ras-related GTP-binding protein 4b [Homo sapiens] 178 3e-45
gi|16933567 mel transforming oncogene [Homo sapiens] 173 9e-44
gi|4506363 RAB13, member RAS oncogene family [Homo sapiens] 173 9e-44
gi|19923260 RAB4A, member RAS oncogene family [Homo sapiens] 171 3e-43
gi|169204777 PREDICTED: similar to RAB13, member RAS oncogene fa... 171 6e-43
gi|169205558 PREDICTED: similar to hCG24991 [Homo sapiens] 171 6e-43
gi|169204174 PREDICTED: similar to hCG24991 [Homo sapiens] 171 6e-43
gi|33695095 ras-related GTP-binding protein RAB10 [Homo sapiens] 171 6e-43
gi|5803135 RAB35, member RAS oncogene family [Homo sapiens] 164 4e-41
gi|19923262 RAB5A, member RAS oncogene family [Homo sapiens] 163 9e-41
gi|239915976 RAB19, member RAS oncogene family [Homo sapiens] 163 1e-40
gi|41393614 RAB5C, member RAS oncogene family isoform a [Homo sa... 160 6e-40
gi|41393545 RAB5C, member RAS oncogene family isoform b [Homo sa... 160 6e-40
gi|4506371 RAB5B, member RAS oncogene family [Homo sapiens] 159 1e-39
gi|21361418 RAB30, member RAS oncogene family [Homo sapiens] 159 1e-39
gi|25188193 RAB39B, member RAS oncogene family [Homo sapiens] 159 2e-39
gi|4506367 RAB3A, member RAS oncogene family [Homo sapiens] 159 2e-39
gi|4759000 RAB3D, member RAS oncogene family [Homo sapiens] 155 3e-38
gi|19923985 RAB3C, member RAS oncogene family [Homo sapiens] 152 3e-37
gi|19923750 RAB3B, member RAS oncogene family [Homo sapiens] 151 4e-37
>gi|190358517 RAB11B, member RAS oncogene family [Homo sapiens]
Length = 218
Score = 434 bits (1115), Expect = e-122
Identities = 218/218 (100%), Positives = 218/218 (100%)
Query: 1 MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 60
MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI
Sbjct: 1 MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 60
Query: 61 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM 120
KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM
Sbjct: 61 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM 120
Query: 121 LVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQ 180
LVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQ
Sbjct: 121 LVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQ 180
Query: 181 IADRAAHDESPGNNVVDISVPPTTDGQKPNKLQCCQNL 218
IADRAAHDESPGNNVVDISVPPTTDGQKPNKLQCCQNL
Sbjct: 181 IADRAAHDESPGNNVVDISVPPTTDGQKPNKLQCCQNL 218
>gi|4758984 Ras-related protein Rab-11A [Homo sapiens]
Length = 216
Score = 387 bits (995), Expect = e-108
Identities = 199/218 (91%), Positives = 206/218 (94%), Gaps = 2/218 (0%)
Query: 1 MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 60
MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI
Sbjct: 1 MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 60
Query: 61 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM 120
KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM
Sbjct: 61 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM 120
Query: 121 LVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQ 180
LVGNKSDLRHLRAVPTDEARAFAEKN LSFIETSALDSTNVE AF+ ILTEIYRIVSQKQ
Sbjct: 121 LVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQ 180
Query: 181 IADRAAHDESPGNNVVDISVPPTTDGQKPNKLQCCQNL 218
++DR +D SP NNVV I VPPTT+ KP K+QCCQN+
Sbjct: 181 MSDRRENDMSPSNNVVPIHVPPTTE-NKP-KVQCCQNI 216
>gi|116812567 RAB25 [Homo sapiens]
Length = 213
Score = 247 bits (631), Expect = 5e-66
Identities = 133/220 (60%), Positives = 165/220 (75%), Gaps = 13/220 (5%)
Query: 2 GTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIK 61
GT +D Y+++FKVVLIG+SGVGK+NLLSRFTRNEF+ +S++TIGVEF+TR++ + +K
Sbjct: 4 GTEED-YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVK 62
Query: 62 AQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIML 121
AQIWDTAG ERYRAITSAYYRGAVGALLV+D+ KH TY VERWLKEL DHA++ IV+ML
Sbjct: 63 AQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVML 122
Query: 122 VGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQI 181
VGNKSDL R VPT+EAR FAE N L F+ETSALDSTNVE AF+ +L EI+ VS+++
Sbjct: 123 VGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQR- 181
Query: 182 ADRAAHDESPGNNVVDISVPPTTDGQKP---NKLQCCQNL 218
S N I++ GQ+P K CC +L
Sbjct: 182 ------QNSIRTNA--ITLGSAQAGQEPGPGEKRACCISL 213
>gi|21361884 RAB2B protein isoform 1 [Homo sapiens]
Length = 216
Score = 192 bits (488), Expect = 2e-49
Identities = 96/171 (56%), Positives = 120/171 (70%)
Query: 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 67
Y YLFK ++IGD+GVGKS LL +FT F TIGVEF R + +DGK IK QIWDT
Sbjct: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDT 62
Query: 68 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 127
AGQE +R+IT +YYRGA GALLVYDI + T+ ++ WL++ R H+ SN+VIML+GNKSD
Sbjct: 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSD 122
Query: 128 LRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQ 178
L R V +E AFA ++ L F+ETSA + NVEEAF N EIYR + Q
Sbjct: 123 LESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQ 173
>gi|4506365 RAB2A, member RAS oncogene family [Homo sapiens]
Length = 212
Score = 190 bits (483), Expect = 7e-49
Identities = 95/171 (55%), Positives = 121/171 (70%)
Query: 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 67
Y YLFK ++IGD+GVGKS LL +FT F TIGVEF R I +DGK IK QIWDT
Sbjct: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDT 62
Query: 68 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 127
AGQE +R+IT +YYRGA GALLVYDI + T+ ++ WL++ R H++SN+VIML+GNKSD
Sbjct: 63 AGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSD 122
Query: 128 LRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQ 178
L R V +E AFA ++ L F+ETSA ++NVEEAF N EIY + +
Sbjct: 123 LESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQE 173
>gi|19923483 GTPase Rab14 [Homo sapiens]
Length = 215
Score = 185 bits (469), Expect = 3e-47
Identities = 93/186 (50%), Positives = 123/186 (66%)
Query: 1 MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 60
M T Y Y+FK ++IGD GVGKS LL +FT +F + TIGVEF TR I+V G+ I
Sbjct: 1 MATAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKI 60
Query: 61 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM 120
K QIWDTAGQER+RA+T +YYRGA GAL+VYDI + TY ++ WL + R+ + N VI+
Sbjct: 61 KLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVII 120
Query: 121 LVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQ 180
L+GNK+DL R V +EA+ FAE+N L F+E SA NVE+AF +IY+ +
Sbjct: 121 LIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGS 180
Query: 181 IADRAA 186
+ AA
Sbjct: 181 LDLNAA 186
>gi|13569962 RAB1B, member RAS oncogene family [Homo sapiens]
Length = 201
Score = 184 bits (467), Expect = 5e-47
Identities = 97/200 (48%), Positives = 131/200 (65%), Gaps = 4/200 (2%)
Query: 7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 66
EYDYLFK++LIGDSGVGKS LL RF + + STIGV+F R+I++DGKTIK QIWD
Sbjct: 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 63
Query: 67 TAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKS 126
TAGQER+R ITS+YYRGA G ++VYD+ +Y NV++WL+E+ +A N+ +LVGNKS
Sbjct: 64 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKS 123
Query: 127 DLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAA 186
DL + V A+ FA+ + F+ETSA ++TNVE+AF + EI ++ A+
Sbjct: 124 DLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI----KKRMGPGAAS 179
Query: 187 HDESPGNNVVDISVPPTTDG 206
E P + V P G
Sbjct: 180 GGERPNLKIDSTPVKPAGGG 199
>gi|4758988 RAB1A, member RAS oncogene family isoform 1 [Homo
sapiens]
Length = 205
Score = 181 bits (459), Expect = 4e-46
Identities = 96/206 (46%), Positives = 135/206 (65%), Gaps = 5/206 (2%)
Query: 1 MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 60
M + + EYDYLFK++LIGDSGVGKS LL RF + + STIGV+F R+I++DGKTI
Sbjct: 1 MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI 60
Query: 61 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM 120
K QIWDTAGQER+R ITS+YYRGA G ++VYD+ ++ NV++WL+E+ +A N+ +
Sbjct: 61 KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKL 120
Query: 121 LVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQ 180
LVGNK DL + V A+ FA+ + F+ETSA ++TNVE++F + EI +K+
Sbjct: 121 LVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI-----KKR 175
Query: 181 IADRAAHDESPGNNVVDISVPPTTDG 206
+ A + +NV S P G
Sbjct: 176 MGPGATAGGAEKSNVKIQSTPVKQSG 201
>gi|7706563 RAB8B, member RAS oncogene family [Homo sapiens]
Length = 207
Score = 180 bits (457), Expect = 7e-46
Identities = 87/184 (47%), Positives = 124/184 (67%)
Query: 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 67
YDYLFK++LIGDSGVGK+ LL RF+ + FN STIG++F R+I++DGK IK QIWDT
Sbjct: 5 YDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDT 64
Query: 68 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 127
AGQER+R IT+AYYRGA+G +LVYDI +++N++ W++ + +HA S++ M++GNK D
Sbjct: 65 AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCD 124
Query: 128 LRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAH 187
+ R V + A + F+ETSA S NVEEAF + +I +++K +A
Sbjct: 125 MNDKRQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLARDIMTKLNRKMNDSNSAG 184
Query: 188 DESP 191
P
Sbjct: 185 AGGP 188
>gi|50234889 RAB43 protein [Homo sapiens]
Length = 212
Score = 179 bits (454), Expect = 2e-45
Identities = 88/172 (51%), Positives = 124/172 (72%), Gaps = 1/172 (0%)
Query: 2 GTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIK 61
G D++YD+LFK+VL+GD+ VGK+ ++ RF F+ STIGV+F +++++ GK +K
Sbjct: 9 GDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVK 68
Query: 62 AQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIML 121
QIWDTAGQER+R IT +YYR A GA+L YDI K ++ +V W++++R +A SNIV +L
Sbjct: 69 LQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLL 128
Query: 122 VGNKSDLRHLRAVPTDEARAFAEKNN-LSFIETSALDSTNVEEAFKNILTEI 172
+GNKSDL LR V EA++ AE + L IETSA DS+NVEEAF + TE+
Sbjct: 129 IGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 180
>gi|82659107 ras-related GTP-binding protein 4b [Homo sapiens]
Length = 213
Score = 178 bits (452), Expect = 3e-45
Identities = 89/160 (55%), Positives = 112/160 (70%)
Query: 6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIW 65
+ YD+LFK ++IG +G GKS LL +F N+F +S TIGVEF +R + V GKT+K QIW
Sbjct: 3 ETYDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIW 62
Query: 66 DTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNK 125
DTAGQER+R++T +YYRGA GALLVYDI TY ++ WL + R A NIV++L GNK
Sbjct: 63 DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNK 122
Query: 126 SDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAF 165
DL R V EA FA++N L F+ETSAL NVEEAF
Sbjct: 123 KDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAF 162
>gi|16933567 mel transforming oncogene [Homo sapiens]
Length = 207
Score = 173 bits (439), Expect = 9e-44
Identities = 89/208 (42%), Positives = 129/208 (62%), Gaps = 8/208 (3%)
Query: 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 67
YDYLFK++LIGDSGVGK+ +L RF+ + FN STIG++F R+I++DGK IK QIWDT
Sbjct: 5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDT 64
Query: 68 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 127
AGQER+R IT+AYYRGA+G +LVYDI +++N+ W++ + +HA +++ M++GNK D
Sbjct: 65 AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCD 124
Query: 128 LRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAH 187
+ R V + A + F+ETSA + NVE AF + +I K D+
Sbjct: 125 VNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI------KAKMDKKLE 178
Query: 188 DESPGNNVVDISVPPTTDGQKPNKLQCC 215
SP + + + P D QK + C
Sbjct: 179 GNSPQGSNQGVKITP--DQQKRSSFFRC 204
>gi|4506363 RAB13, member RAS oncogene family [Homo sapiens]
Length = 203
Score = 173 bits (439), Expect = 9e-44
Identities = 78/165 (47%), Positives = 119/165 (72%)
Query: 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 67
YD+LFK++LIGDSGVGK+ L+ RF + FN STIG++F R++ ++GK IK Q+WDT
Sbjct: 5 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDT 64
Query: 68 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 127
AGQER++ IT+AYYRGA+G +LVYDI ++EN++ W+K ++++A + + +L+GNK D
Sbjct: 65 AGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCD 124
Query: 128 LRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEI 172
+ R V ++A A ++ + F ETSA S NV+EAF ++ +I
Sbjct: 125 MEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDI 169
>gi|19923260 RAB4A, member RAS oncogene family [Homo sapiens]
Length = 218
Score = 171 bits (434), Expect = 3e-43
Identities = 89/176 (50%), Positives = 115/176 (65%)
Query: 6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIW 65
+ YD+LFK ++IG++G GKS LL +F +F +S TIGVEF ++ I V GK +K QIW
Sbjct: 8 ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 67
Query: 66 DTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNK 125
DTAGQER+R++T +YYRGA GALLVYDI TY + WL + R A NIVI+L GNK
Sbjct: 68 DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNK 127
Query: 126 SDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQI 181
DL R V EA FA++N L F+ETSAL NVEEAF +I + ++
Sbjct: 128 KDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGEL 183
>gi|169204777 PREDICTED: similar to RAB13, member RAS oncogene
family [Homo sapiens]
Length = 327
Score = 171 bits (432), Expect = 6e-43
Identities = 77/165 (46%), Positives = 117/165 (70%)
Query: 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 67
YD+LFK++LIGDSGVGK+ L+ RF + FN STIG++F R++ ++GK IK Q+WDT
Sbjct: 129 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDT 188
Query: 68 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 127
AGQER++ IT+AYYRGA+G +L YDI ++EN++ W+K + ++A + + +L+GNK D
Sbjct: 189 AGQERFKTITTAYYRGAMGIILAYDITDEKSFENIQNWMKSIMENASAGVEHLLLGNKCD 248
Query: 128 LRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEI 172
+ R V ++A A ++ + F ETSA S NV+EAF ++ +I
Sbjct: 249 MEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDI 293
>gi|169205558 PREDICTED: similar to hCG24991 [Homo sapiens]
Length = 327
Score = 171 bits (432), Expect = 6e-43
Identities = 77/165 (46%), Positives = 117/165 (70%)
Query: 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 67
YD+LFK++LIGDSGVGK+ L+ RF + FN STIG++F R++ ++GK IK Q+WDT
Sbjct: 129 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDT 188
Query: 68 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 127
AGQER++ IT+AYYRGA+G +L YDI ++EN++ W+K + ++A + + +L+GNK D
Sbjct: 189 AGQERFKTITTAYYRGAMGIILAYDITDEKSFENIQNWMKSIMENASAGVEHLLLGNKCD 248
Query: 128 LRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEI 172
+ R V ++A A ++ + F ETSA S NV+EAF ++ +I
Sbjct: 249 MEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDI 293
>gi|169204174 PREDICTED: similar to hCG24991 [Homo sapiens]
Length = 327
Score = 171 bits (432), Expect = 6e-43
Identities = 77/165 (46%), Positives = 117/165 (70%)
Query: 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 67
YD+LFK++LIGDSGVGK+ L+ RF + FN STIG++F R++ ++GK IK Q+WDT
Sbjct: 129 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDT 188
Query: 68 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 127
AGQER++ IT+AYYRGA+G +L YDI ++EN++ W+K + ++A + + +L+GNK D
Sbjct: 189 AGQERFKTITTAYYRGAMGIILAYDITDEKSFENIQNWMKSIMENASAGVEHLLLGNKCD 248
Query: 128 LRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEI 172
+ R V ++A A ++ + F ETSA S NV+EAF ++ +I
Sbjct: 249 MEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDI 293
>gi|33695095 ras-related GTP-binding protein RAB10 [Homo sapiens]
Length = 200
Score = 171 bits (432), Expect = 6e-43
Identities = 88/208 (42%), Positives = 130/208 (62%), Gaps = 13/208 (6%)
Query: 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 67
YD LFK++LIGDSGVGK+ +L RF+ + FN STIG++F +++++ GK IK QIWDT
Sbjct: 6 YDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDT 65
Query: 68 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 127
AGQER+ IT++YYRGA+G +LVYDI ++EN+ +WL+ + +HA+ ++ ML+GNK D
Sbjct: 66 AGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCD 125
Query: 128 LRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAH 187
+ R VP + A ++ + F ETSA + N+E+AF + +I R K+
Sbjct: 126 MDDKRVVPKGKGGQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVKE------- 178
Query: 188 DESPGNNVVDISVPPTTDGQKPNKLQCC 215
P + VDIS G K +CC
Sbjct: 179 ---PNSENVDISSGGGVTGWKS---KCC 200
>gi|5803135 RAB35, member RAS oncogene family [Homo sapiens]
Length = 201
Score = 164 bits (416), Expect = 4e-41
Identities = 87/209 (41%), Positives = 133/209 (63%), Gaps = 11/209 (5%)
Query: 7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 66
+YD+LFK+++IGDSGVGKS+LL RF N F+ +TIGV+F R+++++G+ +K QIWD
Sbjct: 4 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWD 63
Query: 67 TAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKS 126
TAGQER+R ITS YYRG G ++VYD+ ++ NV+RWL E+ + D ++ +LVGNK+
Sbjct: 64 TAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKN 122
Query: 127 DLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAA 186
D + V T++A FA + + ETSA ++ NVEE F N +TE+ + +A +
Sbjct: 123 DDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMF-NCITELVLRAKKDNLAKQQQ 181
Query: 187 HDESPGNNVVDISVPPTTDGQKPNKLQCC 215
+ N+VV ++ K +CC
Sbjct: 182 QQQ---NDVVKLT------KNSKRKKRCC 201
>gi|19923262 RAB5A, member RAS oncogene family [Homo sapiens]
Length = 215
Score = 163 bits (413), Expect = 9e-41
Identities = 86/206 (41%), Positives = 126/206 (61%), Gaps = 11/206 (5%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 71
FK+VL+G+S VGKS+L+ RF + +F+ +STIG F T+++ +D T+K +IWDTAGQE
Sbjct: 21 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 80
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 131
RY ++ YYRGA A++VYDI ++ + W+KEL+ A NIVI L GNK+DL +
Sbjct: 81 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 140
Query: 132 RAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHDESP 191
RAV EA+++A+ N+L F+ETSA S NV E F I ++ + ++P
Sbjct: 141 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK-----------NEPQNP 189
Query: 192 GNNVVDISVPPTTDGQKPNKLQCCQN 217
G N T+ +P + QCC N
Sbjct: 190 GANSARGRGVDLTEPTQPTRNQCCSN 215
>gi|239915976 RAB19, member RAS oncogene family [Homo sapiens]
Length = 217
Score = 163 bits (412), Expect = 1e-40
Identities = 76/169 (44%), Positives = 114/169 (67%), Gaps = 1/169 (0%)
Query: 5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 64
D+ +DYLFK++LIGDS VGK+ ++ F + ++TIGV+F RS+ +DGK +K Q+
Sbjct: 11 DENFDYLFKIILIGDSNVGKTCVVQHFKSGVYTETQQNTIGVDFTVRSLDIDGKKVKMQV 70
Query: 65 WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 124
WDTAGQER+R IT +YYR A A++ YD+ + T+E++ W+ E+ + +N+VIML+GN
Sbjct: 71 WDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESIPHWIHEIEKYGAANVVIMLIGN 130
Query: 125 KSDLRHLRAVPTDEARAFAEKNN-LSFIETSALDSTNVEEAFKNILTEI 172
K DL R V ++A AEK L+ +ETSA +S N+EE F + E+
Sbjct: 131 KCDLWEKRHVLFEDACTLAEKYGLLAVLETSAKESKNIEEVFVLMAKEL 179
>gi|41393614 RAB5C, member RAS oncogene family isoform a [Homo
sapiens]
Length = 216
Score = 160 bits (406), Expect = 6e-40
Identities = 88/207 (42%), Positives = 126/207 (60%), Gaps = 13/207 (6%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 71
FK+VL+G+S VGKS+L+ RF + +F+ +STIG F T+++ +D T+K +IWDTAGQE
Sbjct: 22 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 81
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 131
RY ++ YYRGA A++VYDI T+ + W+KEL+ A NIVI L GNK+DL
Sbjct: 82 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 141
Query: 132 RAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHDESP 191
RAV EA+A+A+ N+L F+ETSA + NV E F I ++ + Q +P
Sbjct: 142 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNATG-------AP 194
Query: 192 G-NNVVDISVPPTTDGQKPNKLQCCQN 217
G N VD+ + ++ QCC N
Sbjct: 195 GRNRGVDLQ-----ENNPASRSQCCSN 216
>gi|41393545 RAB5C, member RAS oncogene family isoform b [Homo
sapiens]
Length = 216
Score = 160 bits (406), Expect = 6e-40
Identities = 88/207 (42%), Positives = 126/207 (60%), Gaps = 13/207 (6%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 71
FK+VL+G+S VGKS+L+ RF + +F+ +STIG F T+++ +D T+K +IWDTAGQE
Sbjct: 22 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 81
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 131
RY ++ YYRGA A++VYDI T+ + W+KEL+ A NIVI L GNK+DL
Sbjct: 82 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 141
Query: 132 RAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHDESP 191
RAV EA+A+A+ N+L F+ETSA + NV E F I ++ + Q +P
Sbjct: 142 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNATG-------AP 194
Query: 192 G-NNVVDISVPPTTDGQKPNKLQCCQN 217
G N VD+ + ++ QCC N
Sbjct: 195 GRNRGVDLQ-----ENNPASRSQCCSN 216
>gi|4506371 RAB5B, member RAS oncogene family [Homo sapiens]
Length = 215
Score = 159 bits (403), Expect = 1e-39
Identities = 90/206 (43%), Positives = 130/206 (63%), Gaps = 11/206 (5%)
Query: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 71
FK+VL+G+S VGKS+L+ RF + +F+ +STIG F T+S+ +D T+K +IWDTAGQE
Sbjct: 21 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQE 80
Query: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 131
RY ++ YYRGA A++VYDI T+ + W+KEL+ A +IVI L GNK+DL +
Sbjct: 81 RYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANK 140
Query: 132 RAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHDESP 191
R V +EA+A+A+ N+L F+ETSA + NV + F I ++ + S+ Q AA S
Sbjct: 141 RMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPK--SEPQNLGGAA-GRSR 197
Query: 192 GNNVVDISVPPTTDGQKPNKLQCCQN 217
G VD+ + + NK QCC N
Sbjct: 198 G---VDLH-----EQSQQNKSQCCSN 215
>gi|21361418 RAB30, member RAS oncogene family [Homo sapiens]
Length = 203
Score = 159 bits (403), Expect = 1e-39
Identities = 83/210 (39%), Positives = 132/210 (62%), Gaps = 13/210 (6%)
Query: 6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIW 65
++YD+LFK+VLIG++GVGK+ L+ RFT+ F +TIGV+F ++++++G+ +K QIW
Sbjct: 4 EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIW 63
Query: 66 DTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNK 125
DTAGQER+R+IT +YYR A +L YDI ++ + WL+E+ +A + ++ +LVGNK
Sbjct: 64 DTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNK 123
Query: 126 SDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRA 185
DL R V A F+E ++ ++ETSA +S NVE+ F ++ R++S+
Sbjct: 124 IDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLAC---RLISE------- 173
Query: 186 AHDESPGNNVVDISVPPTTDGQKPNKLQCC 215
A + NNV S P +G+ + L CC
Sbjct: 174 ARQNTLVNNV---SSPLPGEGKSISYLTCC 200
>gi|25188193 RAB39B, member RAS oncogene family [Homo sapiens]
Length = 213
Score = 159 bits (402), Expect = 2e-39
Identities = 82/174 (47%), Positives = 116/174 (66%), Gaps = 2/174 (1%)
Query: 10 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD-GKTIKAQIWDTA 68
Y F++++IGDS VGKS L+ RFT F S T+GV+F +R ++++ GK IK QIWDTA
Sbjct: 7 YQFRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEPGKRIKLQIWDTA 66
Query: 69 GQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS-NIVIMLVGNKSD 127
GQER+R+IT AYYR +VG LL++DI +++NV WL+E + H IV +LVG+K D
Sbjct: 67 GQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHEWLEETKVHVQPYQIVFVLVGHKCD 126
Query: 128 LRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQI 181
L R V EA A + +IETSA D+ NVE+AF ++ +IY +V + +I
Sbjct: 127 LDTQRQVTRHEAEKLAAAYGMKYIETSARDAINVEKAFTDLTRDIYELVKRGEI 180
>gi|4506367 RAB3A, member RAS oncogene family [Homo sapiens]
Length = 220
Score = 159 bits (401), Expect = 2e-39
Identities = 79/202 (39%), Positives = 122/202 (60%), Gaps = 1/202 (0%)
Query: 5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 64
D +DY+FK+++IG+S VGK++ L R+ + F ST+G++F ++I + K IK QI
Sbjct: 16 DQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQI 75
Query: 65 WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 124
WDTAGQERYR IT+AYYRGA+G +L+YDI ++ V+ W +++ ++ N ++LVGN
Sbjct: 76 WDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGN 135
Query: 125 KSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQK-QIAD 183
K D+ R V ++ R A+ F E SA D+ NV++ F+ ++ I +S+ AD
Sbjct: 136 KCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTAD 195
Query: 184 RAAHDESPGNNVVDISVPPTTD 205
A G + D VPP D
Sbjct: 196 PAVTGAKQGPQLSDQQVPPHQD 217
>gi|4759000 RAB3D, member RAS oncogene family [Homo sapiens]
Length = 219
Score = 155 bits (392), Expect = 3e-38
Identities = 76/197 (38%), Positives = 119/197 (60%)
Query: 5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 64
D +DY+FK++LIG+S VGK++ L R+ + F ST+G++F +++ K IK QI
Sbjct: 16 DQNFDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQI 75
Query: 65 WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 124
WDTAGQERYR IT+AYYRGA+G LL+YDIA ++ V+ W +++ ++ N ++LVGN
Sbjct: 76 WDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGN 135
Query: 125 KSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADR 184
K DL R VP ++ R A+ F E SA ++ NV++ F+ ++ I +++
Sbjct: 136 KCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKMNESLEPSS 195
Query: 185 AAHDESPGNNVVDISVP 201
++ G V D P
Sbjct: 196 SSGSNGKGPAVGDAPAP 212
>gi|19923985 RAB3C, member RAS oncogene family [Homo sapiens]
Length = 227
Score = 152 bits (383), Expect = 3e-37
Identities = 73/198 (36%), Positives = 119/198 (60%)
Query: 5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 64
D +DY+FK+++IG+S VGK++ L R+ + F ST+G++F +++ + K IK QI
Sbjct: 24 DQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQI 83
Query: 65 WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 124
WDTAGQERYR IT+AYYRGA+G +L+YDI ++ V+ W +++ ++ N ++LVGN
Sbjct: 84 WDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGN 143
Query: 125 KSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADR 184
K D+ R + T+ + E+ F ETSA D+ NV++ F+ ++ I +S+ D
Sbjct: 144 KCDMEDERVISTERGQHLGEQLGFEFFETSAKDNINVKQTFERLVDIICDKMSESLETDP 203
Query: 185 AAHDESPGNNVVDISVPP 202
A + + PP
Sbjct: 204 AITAAKQNTRLKETPPPP 221
>gi|19923750 RAB3B, member RAS oncogene family [Homo sapiens]
Length = 219
Score = 151 bits (382), Expect = 4e-37
Identities = 74/198 (37%), Positives = 120/198 (60%), Gaps = 2/198 (1%)
Query: 5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 64
D +DY+FK+++IG+S VGK++ L R+ + F ST+G++F +++ K +K QI
Sbjct: 16 DQNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQI 75
Query: 65 WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 124
WDTAGQERYR IT+AYYRGA+G +L+YDI ++ V+ W +++ ++ N ++LVGN
Sbjct: 76 WDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGN 135
Query: 125 KSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADR 184
K D+ R VPT++ + AE+ F E SA ++ +V +AF+ ++ I +S D
Sbjct: 136 KCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSDSLDTDP 195
Query: 185 AAHDESPGNNVVDISVPP 202
+ S + D PP
Sbjct: 196 SMLGSSKNTRLSD--TPP 211
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.132 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,301,021
Number of Sequences: 37866
Number of extensions: 265733
Number of successful extensions: 1269
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 857
Number of HSP's gapped (non-prelim): 273
length of query: 218
length of database: 18,247,518
effective HSP length: 98
effective length of query: 120
effective length of database: 14,536,650
effective search space: 1744398000
effective search space used: 1744398000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.