Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: VGLL4 Sequence: fasta or formatted (210aa) NCBI GI: 190014595
Description:

vestigial like 4 isoform c

Referenced in:

Additional Genes in Development

Other entries for this name:
alt prot [290aa] vestigial like 4 isoform b
alt prot [296aa] vestigial like 4 isoform a
alt prot [206aa] vestigial like 4 isoform d
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.4         24           2
 C cysteine            2.9          6           1
 D aspartate           3.8          8           2
 E glutamate           4.3          9           2
 F phenylalanine       1.0          2           1
 G glycine             6.2         13           1
 H histidine           4.3          9           1
 I isoleucine          2.9          6           1
 K lysine              3.8          8           1
 L leucine             6.7         14           1
 M methionine          1.4          3           1
 N asparagine          3.8          8           1
 P proline            10.5         22           2
 Q glutamine           2.4          5           2
 R arginine            8.1         17           2
 S serine             14.8         31           3
 T threonine           5.2         11           2
 V valine              4.8         10           2
 W tryptophan          0.5          1           1
 Y tyrosine            1.4          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   vestigial like 4 isoform c 
VGLL4                 0.978   vestigial like 4 isoform d 
VGLL4                 0.978   vestigial like 4 isoform a 
VGLL4                 0.978   vestigial like 4 isoform b 
PRR12                 0.027   proline rich 12 
LOC100287141          0.022   PREDICTED: hypothetical protein XP_002343631 
RAI1                  0.022   retinoic acid induced 1 
LOC100292673          0.022   PREDICTED: hypothetical protein 
LOC100291194          0.022   PREDICTED: hypothetical protein XP_002348117 
LOC100288065          0.022   PREDICTED: hypothetical protein XP_002344233 
BAT2D1                0.022   HBxAg transactivated protein 2 
LOC100132891          0.020   PREDICTED: hypothetical protein 
LOC100132891          0.020   PREDICTED: hypothetical protein 
LOC100132891          0.020   PREDICTED: hypothetical protein 
TCP10                 0.020   t-complex 10 
CSF1                  0.017   colony stimulating factor 1 isoform a precursor [Hom...
CSF1                  0.017   colony stimulating factor 1 isoform b precursor [Hom...
CSF1                  0.017   colony stimulating factor 1 isoform a precursor [Hom...
ZNF503                0.017   zinc finger protein 503 
SRRM2                 0.017   splicing coactivator subunit SRm300 
MAST4                 0.017   microtubule associated serine/threonine kinase fami...
SRRM1                 0.017   serine/arginine repetitive matrix 1 
SYNJ1                 0.017   synaptojanin 1 isoform a 
SYNJ1                 0.017   synaptojanin 1 isoform b 
TCP10L2               0.015   t-complex 10-like 2 
IRF7                  0.015   interferon regulatory factor 7 isoform d 
IRF7                  0.015   interferon regulatory factor 7 isoform a 
MUC6                  0.015   mucin 6, gastric 
TTC6                  0.015   PREDICTED: tetratricopeptide repeat domain 6 
TTC6                  0.015   PREDICTED: tetratricopeptide repeat domain 6 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press