Guide to the Human Genome
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Name: VGLL4 Sequence: fasta or formatted (290aa) NCBI GI: 190014591
Description:

vestigial like 4 isoform b

Referenced in:

Additional Genes in Development

Other entries for this name:
alt prot [296aa] vestigial like 4 isoform a
alt prot [210aa] vestigial like 4 isoform c
alt prot [206aa] vestigial like 4 isoform d
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.7         31           2
 C cysteine            2.4          7           1
 D aspartate           5.5         16           2
 E glutamate           5.2         15           2
 F phenylalanine       1.4          4           1
 G glycine             5.5         16           1
 H histidine           4.5         13           1
 I isoleucine          2.8          8           1
 K lysine              3.8         11           1
 L leucine             7.6         22           1
 M methionine          1.7          5           1
 N asparagine          3.4         10           1
 P proline            10.7         31           3
 Q glutamine           2.1          6           2
 R arginine            7.9         23           2
 S serine             14.1         41           3
 T threonine           4.8         14           2
 V valine              4.5         13           2
 W tryptophan          0.3          1           1
 Y tyrosine            1.0          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   vestigial like 4 isoform b 
VGLL4                 0.927   vestigial like 4 isoform a 
VGLL4                 0.701   vestigial like 4 isoform d 
VGLL4                 0.699   vestigial like 4 isoform c 
PRR12                 0.019   proline rich 12 
BAT2D1                0.018   HBxAg transactivated protein 2 
LOC100287141          0.016   PREDICTED: hypothetical protein XP_002343631 
RAI1                  0.016   retinoic acid induced 1 
LOC100292673          0.016   PREDICTED: hypothetical protein 
LOC100291194          0.016   PREDICTED: hypothetical protein XP_002348117 
LOC100288065          0.016   PREDICTED: hypothetical protein XP_002344233 
RIMS1                 0.016   regulating synaptic membrane exocytosis 1 
LOC100132891          0.014   PREDICTED: hypothetical protein 
LOC100132891          0.014   PREDICTED: hypothetical protein 
LOC100132891          0.014   PREDICTED: hypothetical protein 
RYBP                  0.014   RING1 and YY1 binding protein 
TCP10                 0.014   t-complex 10 
CSF1                  0.012   colony stimulating factor 1 isoform a precursor [Hom...
CSF1                  0.012   colony stimulating factor 1 isoform b precursor [Hom...
CSF1                  0.012   colony stimulating factor 1 isoform a precursor [Hom...
ZNF503                0.012   zinc finger protein 503 
SRRM2                 0.012   splicing coactivator subunit SRm300 
SRRM1                 0.012   serine/arginine repetitive matrix 1 
SYNJ1                 0.012   synaptojanin 1 isoform a 
SYNJ1                 0.012   synaptojanin 1 isoform b 
TCP10L2               0.011   t-complex 10-like 2 
LOC728317             0.011   PREDICTED: hypothetical protein 
IRF7                  0.011   interferon regulatory factor 7 isoform d 
IRF7                  0.011   interferon regulatory factor 7 isoform a 
MEIS2                 0.011   Meis homeobox 2 isoform g 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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