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Search of human proteins with 190014593
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|190014593 vestigial like 4 isoform a [Homo sapiens]
(296 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|190014593 vestigial like 4 isoform a [Homo sapiens] 607 e-174
gi|190014591 vestigial like 4 isoform b [Homo sapiens] 549 e-156
gi|190014597 vestigial like 4 isoform d [Homo sapiens] 421 e-118
gi|190014595 vestigial like 4 isoform c [Homo sapiens] 420 e-118
gi|153792074 proline rich 12 [Homo sapiens] 36 0.035
gi|115298682 HBxAg transactivated protein 2 [Homo sapiens] 35 0.10
gi|239745977 PREDICTED: hypothetical protein XP_002343631 [Homo ... 34 0.13
gi|40807477 retinoic acid induced 1 [Homo sapiens] 34 0.13
gi|239757609 PREDICTED: hypothetical protein [Homo sapiens] 34 0.18
gi|239752116 PREDICTED: hypothetical protein XP_002348117 [Homo ... 34 0.18
gi|239746618 PREDICTED: hypothetical protein XP_002344233 [Homo ... 34 0.18
gi|41054864 regulating synaptic membrane exocytosis 1 [Homo sapi... 34 0.18
gi|239754911 PREDICTED: hypothetical protein [Homo sapiens] 33 0.23
gi|239749451 PREDICTED: hypothetical protein [Homo sapiens] 33 0.23
gi|239743581 PREDICTED: hypothetical protein [Homo sapiens] 33 0.23
gi|112363092 RING1 and YY1 binding protein [Homo sapiens] 33 0.30
gi|105553088 t-complex 10 [Homo sapiens] 33 0.39
gi|27262667 colony stimulating factor 1 isoform a precursor [Hom... 32 0.51
gi|27262663 colony stimulating factor 1 isoform b precursor [Hom... 32 0.51
gi|27262661 colony stimulating factor 1 isoform a precursor [Hom... 32 0.51
gi|24432032 zinc finger protein 503 [Homo sapiens] 32 0.51
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 32 0.51
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 32 0.67
gi|237757310 synaptojanin 1 isoform a [Homo sapiens] 32 0.87
gi|237757308 synaptojanin 1 isoform b [Homo sapiens] 32 0.87
gi|223468602 t-complex 10-like 2 [Homo sapiens] 31 1.1
gi|98985819 interferon regulatory factor 7 isoform d [Homo sapiens] 31 1.1
gi|4758610 interferon regulatory factor 7 isoform a [Homo sapiens] 31 1.1
gi|151301154 mucin 6, gastric [Homo sapiens] 31 1.1
gi|113430177 PREDICTED: hypothetical protein [Homo sapiens] 31 1.5
>gi|190014593 vestigial like 4 isoform a [Homo sapiens]
Length = 296
Score = 607 bits (1566), Expect = e-174
Identities = 296/296 (100%), Positives = 296/296 (100%)
Query: 1 MLFMKMDLLNYQYLDKMNNNIGILCYEGEAALRGEPRIQTLPVASALSSHRTGPPPISPS 60
MLFMKMDLLNYQYLDKMNNNIGILCYEGEAALRGEPRIQTLPVASALSSHRTGPPPISPS
Sbjct: 1 MLFMKMDLLNYQYLDKMNNNIGILCYEGEAALRGEPRIQTLPVASALSSHRTGPPPISPS 60
Query: 61 KRKFSMEPGDEDLDCDNDHVSKMSRIFNPHLNKTANGDCRRDPRERSRSPIERAVAPTMS 120
KRKFSMEPGDEDLDCDNDHVSKMSRIFNPHLNKTANGDCRRDPRERSRSPIERAVAPTMS
Sbjct: 61 KRKFSMEPGDEDLDCDNDHVSKMSRIFNPHLNKTANGDCRRDPRERSRSPIERAVAPTMS 120
Query: 121 LHGSHLYTSLPSLGLEQPLALTKNSLDASRPAGLSPTLTPGERQQNRPSVITCASAGARN 180
LHGSHLYTSLPSLGLEQPLALTKNSLDASRPAGLSPTLTPGERQQNRPSVITCASAGARN
Sbjct: 121 LHGSHLYTSLPSLGLEQPLALTKNSLDASRPAGLSPTLTPGERQQNRPSVITCASAGARN 180
Query: 181 CNLSHCPIAHSGCAAPGPASYRRPPSAATTCDPVVEEHFRRSLGKNYKEPEPAPNSVSIT 240
CNLSHCPIAHSGCAAPGPASYRRPPSAATTCDPVVEEHFRRSLGKNYKEPEPAPNSVSIT
Sbjct: 181 CNLSHCPIAHSGCAAPGPASYRRPPSAATTCDPVVEEHFRRSLGKNYKEPEPAPNSVSIT 240
Query: 241 GSVDDHFAKALGDTWLQIKAAKDGASSSPESASRRGQPASPSAHMVSHSHSPSVVS 296
GSVDDHFAKALGDTWLQIKAAKDGASSSPESASRRGQPASPSAHMVSHSHSPSVVS
Sbjct: 241 GSVDDHFAKALGDTWLQIKAAKDGASSSPESASRRGQPASPSAHMVSHSHSPSVVS 296
>gi|190014591 vestigial like 4 isoform b [Homo sapiens]
Length = 290
Score = 549 bits (1414), Expect = e-156
Identities = 268/268 (100%), Positives = 268/268 (100%)
Query: 29 EAALRGEPRIQTLPVASALSSHRTGPPPISPSKRKFSMEPGDEDLDCDNDHVSKMSRIFN 88
EAALRGEPRIQTLPVASALSSHRTGPPPISPSKRKFSMEPGDEDLDCDNDHVSKMSRIFN
Sbjct: 23 EAALRGEPRIQTLPVASALSSHRTGPPPISPSKRKFSMEPGDEDLDCDNDHVSKMSRIFN 82
Query: 89 PHLNKTANGDCRRDPRERSRSPIERAVAPTMSLHGSHLYTSLPSLGLEQPLALTKNSLDA 148
PHLNKTANGDCRRDPRERSRSPIERAVAPTMSLHGSHLYTSLPSLGLEQPLALTKNSLDA
Sbjct: 83 PHLNKTANGDCRRDPRERSRSPIERAVAPTMSLHGSHLYTSLPSLGLEQPLALTKNSLDA 142
Query: 149 SRPAGLSPTLTPGERQQNRPSVITCASAGARNCNLSHCPIAHSGCAAPGPASYRRPPSAA 208
SRPAGLSPTLTPGERQQNRPSVITCASAGARNCNLSHCPIAHSGCAAPGPASYRRPPSAA
Sbjct: 143 SRPAGLSPTLTPGERQQNRPSVITCASAGARNCNLSHCPIAHSGCAAPGPASYRRPPSAA 202
Query: 209 TTCDPVVEEHFRRSLGKNYKEPEPAPNSVSITGSVDDHFAKALGDTWLQIKAAKDGASSS 268
TTCDPVVEEHFRRSLGKNYKEPEPAPNSVSITGSVDDHFAKALGDTWLQIKAAKDGASSS
Sbjct: 203 TTCDPVVEEHFRRSLGKNYKEPEPAPNSVSITGSVDDHFAKALGDTWLQIKAAKDGASSS 262
Query: 269 PESASRRGQPASPSAHMVSHSHSPSVVS 296
PESASRRGQPASPSAHMVSHSHSPSVVS
Sbjct: 263 PESASRRGQPASPSAHMVSHSHSPSVVS 290
>gi|190014597 vestigial like 4 isoform d [Homo sapiens]
Length = 206
Score = 421 bits (1082), Expect = e-118
Identities = 205/206 (99%), Positives = 206/206 (100%)
Query: 91 LNKTANGDCRRDPRERSRSPIERAVAPTMSLHGSHLYTSLPSLGLEQPLALTKNSLDASR 150
+NKTANGDCRRDPRERSRSPIERAVAPTMSLHGSHLYTSLPSLGLEQPLALTKNSLDASR
Sbjct: 1 MNKTANGDCRRDPRERSRSPIERAVAPTMSLHGSHLYTSLPSLGLEQPLALTKNSLDASR 60
Query: 151 PAGLSPTLTPGERQQNRPSVITCASAGARNCNLSHCPIAHSGCAAPGPASYRRPPSAATT 210
PAGLSPTLTPGERQQNRPSVITCASAGARNCNLSHCPIAHSGCAAPGPASYRRPPSAATT
Sbjct: 61 PAGLSPTLTPGERQQNRPSVITCASAGARNCNLSHCPIAHSGCAAPGPASYRRPPSAATT 120
Query: 211 CDPVVEEHFRRSLGKNYKEPEPAPNSVSITGSVDDHFAKALGDTWLQIKAAKDGASSSPE 270
CDPVVEEHFRRSLGKNYKEPEPAPNSVSITGSVDDHFAKALGDTWLQIKAAKDGASSSPE
Sbjct: 121 CDPVVEEHFRRSLGKNYKEPEPAPNSVSITGSVDDHFAKALGDTWLQIKAAKDGASSSPE 180
Query: 271 SASRRGQPASPSAHMVSHSHSPSVVS 296
SASRRGQPASPSAHMVSHSHSPSVVS
Sbjct: 181 SASRRGQPASPSAHMVSHSHSPSVVS 206
>gi|190014595 vestigial like 4 isoform c [Homo sapiens]
Length = 210
Score = 420 bits (1080), Expect = e-118
Identities = 205/205 (100%), Positives = 205/205 (100%)
Query: 92 NKTANGDCRRDPRERSRSPIERAVAPTMSLHGSHLYTSLPSLGLEQPLALTKNSLDASRP 151
NKTANGDCRRDPRERSRSPIERAVAPTMSLHGSHLYTSLPSLGLEQPLALTKNSLDASRP
Sbjct: 6 NKTANGDCRRDPRERSRSPIERAVAPTMSLHGSHLYTSLPSLGLEQPLALTKNSLDASRP 65
Query: 152 AGLSPTLTPGERQQNRPSVITCASAGARNCNLSHCPIAHSGCAAPGPASYRRPPSAATTC 211
AGLSPTLTPGERQQNRPSVITCASAGARNCNLSHCPIAHSGCAAPGPASYRRPPSAATTC
Sbjct: 66 AGLSPTLTPGERQQNRPSVITCASAGARNCNLSHCPIAHSGCAAPGPASYRRPPSAATTC 125
Query: 212 DPVVEEHFRRSLGKNYKEPEPAPNSVSITGSVDDHFAKALGDTWLQIKAAKDGASSSPES 271
DPVVEEHFRRSLGKNYKEPEPAPNSVSITGSVDDHFAKALGDTWLQIKAAKDGASSSPES
Sbjct: 126 DPVVEEHFRRSLGKNYKEPEPAPNSVSITGSVDDHFAKALGDTWLQIKAAKDGASSSPES 185
Query: 272 ASRRGQPASPSAHMVSHSHSPSVVS 296
ASRRGQPASPSAHMVSHSHSPSVVS
Sbjct: 186 ASRRGQPASPSAHMVSHSHSPSVVS 210
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 36.2 bits (82), Expect = 0.035
Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 10/118 (8%)
Query: 166 NRPSVITCASAGARNCNLSHCPIAHSGCAAPGPASYRRPPSAATTCDPVVEEHFRRSLGK 225
+RP V S A+N P++ G +AP P + PP T E+ ++
Sbjct: 1668 HRPPVPVRRSGQAKN------PVSAGGSSAPPPKAPAPPPKPETPEKTTSEKPPEQTPET 1721
Query: 226 NYKEPEPAPNSVSITGSVDDHFAK---ALGDTWLQIKAAKDGASSSPESASRRGQPAS 280
EP PAP S+ V+ K G+ L+ + A G + PE + GQPA+
Sbjct: 1722 AMPEP-PAPEKPSLLRPVEKEKEKEKVTRGERPLRGERATSGRQTRPERSLATGQPAT 1778
>gi|115298682 HBxAg transactivated protein 2 [Homo sapiens]
Length = 2817
Score = 34.7 bits (78), Expect = 0.10
Identities = 49/207 (23%), Positives = 74/207 (35%), Gaps = 16/207 (7%)
Query: 76 DNDHVSKMSRIFNPHLNKTANGDCRRDPRERSRSPIERAVAPTMSLHGSHLYTSLPSLGL 135
D + K ++ K AN R + S+ P A + + S+P L
Sbjct: 1695 DEERRKKEEQVIQVWNKKNANEKGRS---QTSKLPPRFAKKQATGIQQAQSSASVPPLAS 1751
Query: 136 EQPLALTKNSLDASRPAGLSPTLTPGERQQNRPSVITCASAGARNCNLSHCPIAHSGCAA 195
T S+ AS A L TLTP + P + + P+ S +A
Sbjct: 1752 APLPPSTSASVPASTSAPLPATLTPVPASTSAPVPASTLA-----------PVLAS-TSA 1799
Query: 196 PGPASYRRPPSAATTCDPVVEEHFRRSLGKNYKEPEPAPNSVSITGSVDDHFA-KALGDT 254
P PAS P SA+ + V + + P AP I SV + L
Sbjct: 1800 PVPASPLAPVSASASVSASVPASTSAAAITSSSAPASAPAPTPILASVSTPASVTILASA 1859
Query: 255 WLQIKAAKDGASSSPESASRRGQPASP 281
+ I A+ ++S+P A PA+P
Sbjct: 1860 SIPILASALASTSAPTPAPAASSPAAP 1886
>gi|239745977 PREDICTED: hypothetical protein XP_002343631 [Homo
sapiens]
Length = 177
Score = 34.3 bits (77), Expect = 0.13
Identities = 30/107 (28%), Positives = 40/107 (37%), Gaps = 27/107 (25%)
Query: 107 SRSPIERAVAPTMSLHG--------SHLYTSLPSLGLEQPLALTKNSLDASRPAGLSPTL 158
+ S RAV P +S+ G SHLY+ L RP +S T+
Sbjct: 68 AHSSCRRAVRPGLSVAGKASAPRPASHLYSKL-------------------RPRLVSVTV 108
Query: 159 TPGERQQNRPSVITCASAGARNCNLSHCPIAHSGCAAPGPASYRRPP 205
+ +PS C+S+G S G AAPGP PP
Sbjct: 109 STSSPSAWKPSPANCSSSGKDEAAASSTTPPSMGPAAPGPGPTPPPP 155
>gi|40807477 retinoic acid induced 1 [Homo sapiens]
Length = 1906
Score = 34.3 bits (77), Expect = 0.13
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 12/93 (12%)
Query: 200 SYRRPPSAATTCDPVVEEHFRRSLGKNYKEPEPAPNSVSITGSVDDHFAKALGDTWLQIK 259
+YR+P A +CD +R L K+Y P+P P+ G+ A D + +
Sbjct: 29 NYRQPSQAGLSCDR------QRLLAKDYYNPQPYPSYEGGAGTPSGTAAAVAADKYHR-- 80
Query: 260 AAKDGASSSPESASRRGQPASPSAHMVSHSHSP 292
G+ + P +G+PA P + S P
Sbjct: 81 ----GSKALPTQQGLQGRPAFPGYGVQDSSPYP 109
>gi|239757609 PREDICTED: hypothetical protein [Homo sapiens]
Length = 571
Score = 33.9 bits (76), Expect = 0.18
Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 15/101 (14%)
Query: 124 SHLYT--SLPSLGLEQPLALTKNSLDASRPAGLSPTLTPGERQQNRPSVITCASAGARNC 181
SH T + P G E+P ++ ++ +A RP+ L + PG R Q+R A + C
Sbjct: 188 SHTLTPAAQPPRGPEKPTSV--HAEEALRPSRLHQAVDPGSRGQSRSKCAAGLPAASMPC 245
Query: 182 NLSHCPI-------AHSGCAAPG----PASYRRPPSAATTC 211
+ H P AH+ C G P+ R P + C
Sbjct: 246 SRGHIPADQIPSPQAHARCLETGGKGAPSLPRAPLPSTLAC 286
>gi|239752116 PREDICTED: hypothetical protein XP_002348117 [Homo
sapiens]
Length = 571
Score = 33.9 bits (76), Expect = 0.18
Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 15/101 (14%)
Query: 124 SHLYT--SLPSLGLEQPLALTKNSLDASRPAGLSPTLTPGERQQNRPSVITCASAGARNC 181
SH T + P G E+P ++ ++ +A RP+ L + PG R Q+R A + C
Sbjct: 188 SHTLTPAAQPPRGPEKPTSV--HAEEALRPSRLHQAVDPGSRGQSRSKCAAGLPAASMPC 245
Query: 182 NLSHCPI-------AHSGCAAPG----PASYRRPPSAATTC 211
+ H P AH+ C G P+ R P + C
Sbjct: 246 SRGHIPADQIPSPQAHARCLETGGKGAPSLPRAPLPSTLAC 286
>gi|239746618 PREDICTED: hypothetical protein XP_002344233 [Homo
sapiens]
Length = 571
Score = 33.9 bits (76), Expect = 0.18
Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 15/101 (14%)
Query: 124 SHLYT--SLPSLGLEQPLALTKNSLDASRPAGLSPTLTPGERQQNRPSVITCASAGARNC 181
SH T + P G E+P ++ ++ +A RP+ L + PG R Q+R A + C
Sbjct: 188 SHTLTPAAQPPRGPEKPTSV--HAEEALRPSRLHQAVDPGSRGQSRSKCAAGLPAASMPC 245
Query: 182 NLSHCPI-------AHSGCAAPG----PASYRRPPSAATTC 211
+ H P AH+ C G P+ R P + C
Sbjct: 246 SRGHIPADQIPSPQAHARCLETGGKGAPSLPRAPLPSTLAC 286
>gi|41054864 regulating synaptic membrane exocytosis 1 [Homo
sapiens]
Length = 1692
Score = 33.9 bits (76), Expect = 0.18
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 6/89 (6%)
Query: 27 EGEAALRGEPRIQTLPVASALSSHRTGPPPISPSKRKFSMEPGDEDLDCDNDHVSKMSRI 86
E +A L+ R QT P+++A +S + PP +P R EP + L + S SR
Sbjct: 207 EKKARLQERSRSQT-PLSTAAASSQDAAPPSAPPDRSKGAEPSQQALGPEQKQASSRSRS 265
Query: 87 FNPHLNKTANGDCRRDPR-----ERSRSP 110
P K G ++ + ER R P
Sbjct: 266 EPPRERKKTPGLSEQNGKGALKSERKRVP 294
>gi|239754911 PREDICTED: hypothetical protein [Homo sapiens]
Length = 297
Score = 33.5 bits (75), Expect = 0.23
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 138 PLALTKNSLDASRPAGLSPTLTPGERQQNRPSVITCASAGARNCNLSHCPIAHSGCAAPG 197
PL+ + D +R G +P ++PG ++ + S GAR+ + S P + A G
Sbjct: 24 PLSNSSQRADPARRPG-APWVSPGCSPESLRAAPLPGSLGARSRSHSGPPATAAAARASG 82
Query: 198 PASYRRPPSAATTC 211
A R P SAAT C
Sbjct: 83 HAHGRWPRSAATAC 96
>gi|239749451 PREDICTED: hypothetical protein [Homo sapiens]
Length = 297
Score = 33.5 bits (75), Expect = 0.23
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 138 PLALTKNSLDASRPAGLSPTLTPGERQQNRPSVITCASAGARNCNLSHCPIAHSGCAAPG 197
PL+ + D +R G +P ++PG ++ + S GAR+ + S P + A G
Sbjct: 24 PLSNSSQRADPARRPG-APWVSPGCSPESLRAAPLPGSLGARSRSHSGPPATAAAARASG 82
Query: 198 PASYRRPPSAATTC 211
A R P SAAT C
Sbjct: 83 HAHGRWPRSAATAC 96
>gi|239743581 PREDICTED: hypothetical protein [Homo sapiens]
Length = 297
Score = 33.5 bits (75), Expect = 0.23
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 138 PLALTKNSLDASRPAGLSPTLTPGERQQNRPSVITCASAGARNCNLSHCPIAHSGCAAPG 197
PL+ + D +R G +P ++PG ++ + S GAR+ + S P + A G
Sbjct: 24 PLSNSSQRADPARRPG-APWVSPGCSPESLRAAPLPGSLGARSRSHSGPPATAAAARASG 82
Query: 198 PASYRRPPSAATTC 211
A R P SAAT C
Sbjct: 83 HAHGRWPRSAATAC 96
>gi|112363092 RING1 and YY1 binding protein [Homo sapiens]
Length = 228
Score = 33.1 bits (74), Expect = 0.30
Identities = 38/151 (25%), Positives = 61/151 (40%), Gaps = 20/151 (13%)
Query: 35 EPRIQTLPVASALSSHRTGPPPISPSKRKFSMEPGDEDLDCDNDHVSKMSRIFNPHLNKT 94
+PRI + VA ++ PPP K++ +E D++ + +S N +
Sbjct: 54 KPRINSQLVAQQVAQQYATPPPPKKEKKE-KVEKQDKEKPEKDKEISPSVTKKNTNKKTK 112
Query: 95 ANGDCRRDPRERSRSPIERAVAPTMSLHGSHLYTSLPSL-----GLEQPLALT------- 142
D +DP + S I+ A A T + +H TS P L Q LA+T
Sbjct: 113 PKSDILKDPPSEANS-IQSANATTKTSETNH--TSRPRLKNVDRSTAQQLAVTVGNVTVI 169
Query: 143 ----KNSLDASRPAGLSPTLTPGERQQNRPS 169
K +S + + T + G QQN+ S
Sbjct: 170 ITDFKEKTRSSSTSSSTVTSSAGSEQQNQSS 200
>gi|105553088 t-complex 10 [Homo sapiens]
Length = 326
Score = 32.7 bits (73), Expect = 0.39
Identities = 31/127 (24%), Positives = 50/127 (39%), Gaps = 18/127 (14%)
Query: 160 PGERQQNRPSVITCASAGARNCNLSHC-PIAHSGCAAPGPASYRRPPSAATTCDPVVEEH 218
PG RQ P+ + GA +S I H +P + R+ P A+ + E+
Sbjct: 164 PGRRQDRSPAPTGRPTPGAERRGVSEDGKIMHPSSRSPQNSGGRKSPVQASQATTLQEQT 223
Query: 219 FRRSLGKNYKEPEPAPNSVSITGSVDDHFAKALGDTWLQIKAAKDGASSSPESASRRGQP 278
A S S+ GS + F + A + ASS+P+SA R+ P
Sbjct: 224 ---------AAARGADRSSSVLGSSEGGFLSRV--------QADEFASSAPDSAERQNLP 266
Query: 279 ASPSAHM 285
+P + +
Sbjct: 267 VNPPSSL 273
>gi|27262667 colony stimulating factor 1 isoform a precursor [Homo
sapiens]
Length = 554
Score = 32.3 bits (72), Expect = 0.51
Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 15/110 (13%)
Query: 196 PGPASYRRPPSAATTCDPVVEEHFRRS-LGKNYKEPEPAPNSVSITGSVDDHFAKALGDT 254
PG A R P S + +P + S +G + P+P P+ + ++D A+G
Sbjct: 246 PGSAKQRPPRSTCQSFEPPETPVVKDSTIGGS---PQPRPSVGAFNPGMEDILDSAMGTN 302
Query: 255 WLQIKAAKDGAS-----------SSPESASRRGQPASPSAHMVSHSHSPS 293
W+ +A+ + + S P S + +PA PS + + S P+
Sbjct: 303 WVPEEASGEASEIPVPQGTELSPSRPGGGSMQTEPARPSNFLSASSPLPA 352
>gi|27262663 colony stimulating factor 1 isoform b precursor [Homo
sapiens]
Length = 438
Score = 32.3 bits (72), Expect = 0.51
Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 15/110 (13%)
Query: 196 PGPASYRRPPSAATTCDPVVEEHFRRS-LGKNYKEPEPAPNSVSITGSVDDHFAKALGDT 254
PG A R P S + +P + S +G + P+P P+ + ++D A+G
Sbjct: 246 PGSAKQRPPRSTCQSFEPPETPVVKDSTIGGS---PQPRPSVGAFNPGMEDILDSAMGTN 302
Query: 255 WLQIKAAKDGAS-----------SSPESASRRGQPASPSAHMVSHSHSPS 293
W+ +A+ + + S P S + +PA PS + + S P+
Sbjct: 303 WVPEEASGEASEIPVPQGTELSPSRPGGGSMQTEPARPSNFLSASSPLPA 352
>gi|27262661 colony stimulating factor 1 isoform a precursor [Homo
sapiens]
Length = 554
Score = 32.3 bits (72), Expect = 0.51
Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 15/110 (13%)
Query: 196 PGPASYRRPPSAATTCDPVVEEHFRRS-LGKNYKEPEPAPNSVSITGSVDDHFAKALGDT 254
PG A R P S + +P + S +G + P+P P+ + ++D A+G
Sbjct: 246 PGSAKQRPPRSTCQSFEPPETPVVKDSTIGGS---PQPRPSVGAFNPGMEDILDSAMGTN 302
Query: 255 WLQIKAAKDGAS-----------SSPESASRRGQPASPSAHMVSHSHSPS 293
W+ +A+ + + S P S + +PA PS + + S P+
Sbjct: 303 WVPEEASGEASEIPVPQGTELSPSRPGGGSMQTEPARPSNFLSASSPLPA 352
>gi|24432032 zinc finger protein 503 [Homo sapiens]
Length = 646
Score = 32.3 bits (72), Expect = 0.51
Identities = 30/93 (32%), Positives = 37/93 (39%), Gaps = 6/93 (6%)
Query: 117 PTMSLHGSHLYTSLP-SLGLEQPLALTKNSLDASRPAGLSPTLTPGERQQNRPSVITCAS 175
P HG L + P SL Q A SL S+PAG SP PSV+T +
Sbjct: 372 PQFLPHGVALDPTKPGSLVGAQLAAAAAGSLGCSKPAGSSPLAGASP-----PSVMTASL 426
Query: 176 AGARNCNLSHCPIAHSGCAAPGPASYRRPPSAA 208
C HC +G AA + P +AA
Sbjct: 427 CRDPYCLSYHCASHLAGAAAASASCAHDPAAAA 459
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 32.3 bits (72), Expect = 0.51
Identities = 44/199 (22%), Positives = 78/199 (39%), Gaps = 10/199 (5%)
Query: 103 PRERSRSPIERAVAPTMSLHGSHL-YTSLPSLGL-EQPLALTKNSLDASRPAGLSPTLTP 160
P S+S AVA T S G H S+P+ G+ + S A +P+ L+
Sbjct: 2468 PVAGSQSLSSGAVATTTSSAGDHNGMLSVPAPGVPHSDVGEPPASTGAQQPSALAALQPA 2527
Query: 161 GERQQNRPSVITCASAGARNCNLSHCPIAHSGCAAPGPASYRRPPSAATTCDPVVEEHFR 220
ER+ + S + +S+ + + + S + S + +S P A P +
Sbjct: 2528 KERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSLPVQPEVALKRVPSPTPAPK 2587
Query: 221 RSLGKNYKEPEPAP-------NSVSITGSVDDHFAKALGDTWLQIKAAKDGASSSPESAS 273
++ + + PEP P +S S + S + + + ++ +SSS S+S
Sbjct: 2588 EAVREG-RPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2646
Query: 274 RRGQPASPSAHMVSHSHSP 292
PA P + SP
Sbjct: 2647 SSPSPAKPGPQALPKPASP 2665
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 32.0 bits (71), Expect = 0.67
Identities = 50/209 (23%), Positives = 78/209 (37%), Gaps = 37/209 (17%)
Query: 106 RSRSPIERAVAPTMSLHGSHLYTSLPSLGLEQPLALTKNSLDASRPAGLSPTLTPGERQQ 165
RSRSP+ R + SL GS +S + S + LSP+ +P R++
Sbjct: 340 RSRSPVRRRRRSSASLSGSSSSSSSSRSRSPPKKPPKRTSSPPRKTRRLSPSASP-PRRR 398
Query: 166 NRPSVITCASAGARNCNLSHCPIAHSGCAAPGPASYRRPPSAATTCDP-----VVEEHFR 220
+RPS R+ +P P R + + P V +H +
Sbjct: 399 HRPSPPATPPPKTRH--------------SPTPQQSNRTRKSRVSVSPGRTSGKVTKH-K 443
Query: 221 RSLGKNYKEPEPAPNSVSITGSVDDHFAK-ALGDTWLQIK---------AAKDGASSSPE 270
+ + P P P V ++ S +D K A D+ Q + ++ G+SSS E
Sbjct: 444 GTEKRESPSPAPKPRKVELSESEEDKGGKMAAADSVQQRRQYRRQNQQSSSDSGSSSSSE 503
Query: 271 ------SASRRGQPASPSAHMVSHSHSPS 293
S + G+ H S S SPS
Sbjct: 504 DERPKRSHVKNGEVGRRRRHSPSRSASPS 532
>gi|237757310 synaptojanin 1 isoform a [Homo sapiens]
Length = 1612
Score = 31.6 bits (70), Expect = 0.87
Identities = 50/190 (26%), Positives = 66/190 (34%), Gaps = 32/190 (16%)
Query: 103 PRERSRSPIERAVAPTMSLHGSHLYTSLPSLGLEQPLALTKNSLDASRPAGLSPTLTPGE 162
P E R P R VAP + P G P K G+ +PG
Sbjct: 1141 PLEPKRPPPPRPVAPPT--RPAPPQRPPPPSGARSPAPTRKEF------GGIGAPPSPGV 1192
Query: 163 RQQNRPSVITCASAGARNCNLSHCPIAHSGCAAPGPASYRR-----PPSAATTCDPVVEE 217
++ + + + N S P +G A PGPA Y PP A P +
Sbjct: 1193 ARREMEAPKSPGTTRKDNIGRSQ-PSPQAGLAGPGPAGYSTARPTIPPRAGVISAP--QS 1249
Query: 218 HFRRSLGKNYKEPEPAPNSVSITGSVDDHFAKALGDTW----LQIKAAKDGASSSPESAS 273
H R S G+ P S S T + G T+ L+ +AA SS P A
Sbjct: 1250 HARASAGR------LTPESQSKTSET------SKGSTFLPEPLKPQAAFPPQSSLPPPAQ 1297
Query: 274 RRGQPASPSA 283
R +P P A
Sbjct: 1298 RLQEPLVPVA 1307
>gi|237757308 synaptojanin 1 isoform b [Homo sapiens]
Length = 1350
Score = 31.6 bits (70), Expect = 0.87
Identities = 50/190 (26%), Positives = 66/190 (34%), Gaps = 32/190 (16%)
Query: 103 PRERSRSPIERAVAPTMSLHGSHLYTSLPSLGLEQPLALTKNSLDASRPAGLSPTLTPGE 162
P E R P R VAP + P G P K G+ +PG
Sbjct: 1141 PLEPKRPPPPRPVAPPT--RPAPPQRPPPPSGARSPAPTRKEF------GGIGAPPSPGV 1192
Query: 163 RQQNRPSVITCASAGARNCNLSHCPIAHSGCAAPGPASYRR-----PPSAATTCDPVVEE 217
++ + + + N S P +G A PGPA Y PP A P +
Sbjct: 1193 ARREMEAPKSPGTTRKDNIGRSQ-PSPQAGLAGPGPAGYSTARPTIPPRAGVISAP--QS 1249
Query: 218 HFRRSLGKNYKEPEPAPNSVSITGSVDDHFAKALGDTW----LQIKAAKDGASSSPESAS 273
H R S G+ P S S T + G T+ L+ +AA SS P A
Sbjct: 1250 HARASAGR------LTPESQSKTSET------SKGSTFLPEPLKPQAAFPPQSSLPPPAQ 1297
Query: 274 RRGQPASPSA 283
R +P P A
Sbjct: 1298 RLQEPLVPVA 1307
>gi|223468602 t-complex 10-like 2 [Homo sapiens]
Length = 353
Score = 31.2 bits (69), Expect = 1.1
Identities = 31/127 (24%), Positives = 51/127 (40%), Gaps = 18/127 (14%)
Query: 160 PGERQQNRPSVITCASAGARNCNLSHC-PIAHSGCAAPGPASYRRPPSAATTCDPVVEEH 218
PG RQ P+ + GA +S I H + + R+ P A+ + E+
Sbjct: 191 PGRRQDRSPAPTGRPTPGAERREVSEDGKIMHPSSRSLQNSGGRKSPVQASQAATLQEQT 250
Query: 219 FRRSLGKNYKEPEPAPNSVSITGSVDDHFAKALGDTWLQIKAAKDGASSSPESASRRGQP 278
+ A S S+ GS + F + A++ ASSSP+SA R+ P
Sbjct: 251 AAAGV---------ADRSSSVLGSSEGGFLSRV--------QAEEFASSSPDSAERQNLP 293
Query: 279 ASPSAHM 285
+P + +
Sbjct: 294 VNPPSSL 300
>gi|98985819 interferon regulatory factor 7 isoform d [Homo sapiens]
Length = 516
Score = 31.2 bits (69), Expect = 1.1
Identities = 28/105 (26%), Positives = 39/105 (37%), Gaps = 1/105 (0%)
Query: 137 QPLALTKNSLDASRPAGLSPTLTPGERQQNRPSVITCASA-GARNCNLSHCPIAHSGCAA 195
Q L + L AS A PT PGE Q+ P CA G L + +
Sbjct: 201 QQSCLADHLLTASWGADPVPTKAPGEGQEGLPLTGACAGGPGLPAGELYGWAVETTPSPG 260
Query: 196 PGPASYRRPPSAATTCDPVVEEHFRRSLGKNYKEPEPAPNSVSIT 240
P PA+ +AA E + S EP+P ++ +T
Sbjct: 261 PQPAALTTGEAAAPESPHQAEPYLSPSPSACTAVQEPSPGALDVT 305
>gi|4758610 interferon regulatory factor 7 isoform a [Homo sapiens]
Length = 503
Score = 31.2 bits (69), Expect = 1.1
Identities = 28/105 (26%), Positives = 39/105 (37%), Gaps = 1/105 (0%)
Query: 137 QPLALTKNSLDASRPAGLSPTLTPGERQQNRPSVITCASA-GARNCNLSHCPIAHSGCAA 195
Q L + L AS A PT PGE Q+ P CA G L + +
Sbjct: 188 QQSCLADHLLTASWGADPVPTKAPGEGQEGLPLTGACAGGPGLPAGELYGWAVETTPSPG 247
Query: 196 PGPASYRRPPSAATTCDPVVEEHFRRSLGKNYKEPEPAPNSVSIT 240
P PA+ +AA E + S EP+P ++ +T
Sbjct: 248 PQPAALTTGEAAAPESPHQAEPYLSPSPSACTAVQEPSPGALDVT 292
>gi|151301154 mucin 6, gastric [Homo sapiens]
Length = 2439
Score = 31.2 bits (69), Expect = 1.1
Identities = 28/107 (26%), Positives = 36/107 (33%), Gaps = 6/107 (5%)
Query: 137 QPLALTKNSLDASRPAGLSPTLTPGERQQNRPSVITCASAGARNCNLSHCPIAHSGCAAP 196
Q T +L +G SPTL P Q P + G R P + +G P
Sbjct: 1322 QSTTRTTMTLPTPATSGTSPTL-PKSTNQELPGTTATQTTGPRPT-----PASTTGPTTP 1375
Query: 197 GPASYRRPPSAATTCDPVVEEHFRRSLGKNYKEPEPAPNSVSITGSV 243
P RP + TT E+ P A + V TG V
Sbjct: 1376 QPGQPTRPTATETTQTRTTTEYTTPQTPHTTHSPPTAGSPVPSTGPV 1422
>gi|113430177 PREDICTED: hypothetical protein [Homo sapiens]
Length = 2028
Score = 30.8 bits (68), Expect = 1.5
Identities = 31/124 (25%), Positives = 47/124 (37%), Gaps = 20/124 (16%)
Query: 101 RDPRERSRSPIERAVAPTMSLHGSHLYTSLPSLGLEQPLALTKNSLDASRPAGLSPTLTP 160
RD R RSP+ RA+APT P L+ A +P
Sbjct: 582 RDALRRDRSPVRRAIAPT-------------------PGTLSGYRSRARTAIAPTPGTLR 622
Query: 161 GERQQNRPSVITCASAGARNCNLSHCPIAHSGCAAPGPASYRRPPSAATTCDPVVEEHFR 220
G R ++R ++ + + + +H +A + A G S R TTC P+ E R
Sbjct: 623 GYRPRSRRAIASTPATLRGEKSRAHTSLAPAPGALRGDGSRARRAIVPTTC-PLCEIWSR 681
Query: 221 RSLG 224
+G
Sbjct: 682 VGIG 685
Score = 29.3 bits (64), Expect = 4.3
Identities = 28/80 (35%), Positives = 37/80 (46%), Gaps = 9/80 (11%)
Query: 106 RSRSPIERAVAPTM-SLH--GSHLYTSLPSLGLEQPLALTKNSLDASRPAGLSPTLTPGE 162
R RSP+ RAVAPT +LH GS T+ S P AL + S+ +P E
Sbjct: 821 RDRSPVRRAVAPTPGTLHCDGSRKCTATGS----TPGALPGDRSGVSKATAPAPGALCSE 876
Query: 163 RQQNRPSV--ITCASAGARN 180
R + R S+ C G R+
Sbjct: 877 RSRARRSIAPTPCLLCGDRS 896
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.128 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,239,761
Number of Sequences: 37866
Number of extensions: 776300
Number of successful extensions: 2372
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 85
Number of HSP's that attempted gapping in prelim test: 2294
Number of HSP's gapped (non-prelim): 169
length of query: 296
length of database: 18,247,518
effective HSP length: 102
effective length of query: 194
effective length of database: 14,385,186
effective search space: 2790726084
effective search space used: 2790726084
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.