BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|188497671 serum amyloid A2 isoform a [Homo sapiens] (122 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|188497671 serum amyloid A2 isoform a [Homo sapiens] 253 2e-68 gi|40316912 serum amyloid A1 preproprotein [Homo sapiens] 241 1e-64 gi|40316910 serum amyloid A1 preproprotein [Homo sapiens] 241 1e-64 gi|188497687 serum amyloid A2 isoform b [Homo sapiens] 160 3e-40 gi|10835095 serum amyloid A4, constitutive [Homo sapiens] 135 6e-33 gi|153267448 enolase 3 [Homo sapiens] 28 1.7 gi|153267427 enolase 3 [Homo sapiens] 28 1.7 gi|71044479 death inducer-obliterator 1 isoform c [Homo sapiens] 28 1.7 gi|4758222 dual-specificity tyrosine-(Y)-phosphorylation regulat... 28 2.2 gi|239754797 PREDICTED: hypothetical protein [Homo sapiens] 27 2.9 gi|239743415 PREDICTED: hypothetical protein [Homo sapiens] 27 2.9 gi|193082993 GTP binding protein 3 (mitochondrial) isoform III [... 27 2.9 gi|193082991 GTP binding protein 3 (mitochondrial) isoform V [Ho... 27 2.9 gi|193082988 GTP binding protein 3 (mitochondrial) isoform IV [H... 27 2.9 gi|89276764 prostaglandin E receptor 3, subtype EP3 isoform 2 [H... 27 4.9 gi|38505180 prostaglandin E receptor 3, subtype EP3 isoform 5 [H... 27 4.9 gi|38505188 prostaglandin E receptor 3, subtype EP3 isoform 4 [H... 27 4.9 gi|38505186 prostaglandin E receptor 3, subtype EP3 isoform 8 [H... 27 4.9 gi|38505184 prostaglandin E receptor 3, subtype EP3 isoform 7 [H... 27 4.9 gi|38505182 prostaglandin E receptor 3, subtype EP3 isoform 6 [H... 27 4.9 gi|38505178 prostaglandin E receptor 3, subtype EP3 isoform 4 [H... 27 4.9 gi|38505176 prostaglandin E receptor 3, subtype EP3 isoform 3 [H... 27 4.9 gi|38505172 prostaglandin E receptor 3, subtype EP3 isoform 1 [H... 27 4.9 gi|186659506 prostaglandin E receptor 3, subtype EP3 isoform 4 [... 27 4.9 gi|149944451 zinc finger, SWIM domain containing 5 [Homo sapiens] 27 4.9 gi|45356151 non-SMC condensin II complex, subunit D3 [Homo sapiens] 26 6.5 gi|19923830 pre-B-cell leukemia homeobox interacting protein 1 [... 26 6.5 gi|14211943 lysyl oxidase-like 3 precursor [Homo sapiens] 26 8.4 gi|33356174 pinin, desmosome associated protein [Homo sapiens] 26 8.4 >gi|188497671 serum amyloid A2 isoform a [Homo sapiens] Length = 122 Score = 253 bits (647), Expect = 2e-68 Identities = 122/122 (100%), Positives = 122/122 (100%) Query: 1 MKLLTGLVFCSLVLSVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY 60 MKLLTGLVFCSLVLSVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY Sbjct: 1 MKLLTGLVFCSLVLSVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY 60 Query: 61 DAAKRGPGGAWAAEVISNARENIQRLTGRGAEDSLADQAANKWGRSGRDPNHFRPAGLPE 120 DAAKRGPGGAWAAEVISNARENIQRLTGRGAEDSLADQAANKWGRSGRDPNHFRPAGLPE Sbjct: 61 DAAKRGPGGAWAAEVISNARENIQRLTGRGAEDSLADQAANKWGRSGRDPNHFRPAGLPE 120 Query: 121 KY 122 KY Sbjct: 121 KY 122 >gi|40316912 serum amyloid A1 preproprotein [Homo sapiens] Length = 122 Score = 241 bits (615), Expect = 1e-64 Identities = 115/122 (94%), Positives = 118/122 (96%) Query: 1 MKLLTGLVFCSLVLSVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY 60 MKLLTGLVFCSLVL VSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY Sbjct: 1 MKLLTGLVFCSLVLGVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY 60 Query: 61 DAAKRGPGGAWAAEVISNARENIQRLTGRGAEDSLADQAANKWGRSGRDPNHFRPAGLPE 120 DAAKRGPGGAWAAEVIS+ARENIQR G GAEDSLADQAAN+WGRSG+DPNHFRPAGLPE Sbjct: 61 DAAKRGPGGAWAAEVISDARENIQRFFGHGAEDSLADQAANEWGRSGKDPNHFRPAGLPE 120 Query: 121 KY 122 KY Sbjct: 121 KY 122 >gi|40316910 serum amyloid A1 preproprotein [Homo sapiens] Length = 122 Score = 241 bits (615), Expect = 1e-64 Identities = 115/122 (94%), Positives = 118/122 (96%) Query: 1 MKLLTGLVFCSLVLSVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY 60 MKLLTGLVFCSLVL VSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY Sbjct: 1 MKLLTGLVFCSLVLGVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY 60 Query: 61 DAAKRGPGGAWAAEVISNARENIQRLTGRGAEDSLADQAANKWGRSGRDPNHFRPAGLPE 120 DAAKRGPGGAWAAEVIS+ARENIQR G GAEDSLADQAAN+WGRSG+DPNHFRPAGLPE Sbjct: 61 DAAKRGPGGAWAAEVISDARENIQRFFGHGAEDSLADQAANEWGRSGKDPNHFRPAGLPE 120 Query: 121 KY 122 KY Sbjct: 121 KY 122 >gi|188497687 serum amyloid A2 isoform b [Homo sapiens] Length = 83 Score = 160 bits (404), Expect = 3e-40 Identities = 77/77 (100%), Positives = 77/77 (100%) Query: 1 MKLLTGLVFCSLVLSVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY 60 MKLLTGLVFCSLVLSVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY Sbjct: 1 MKLLTGLVFCSLVLSVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY 60 Query: 61 DAAKRGPGGAWAAEVIS 77 DAAKRGPGGAWAAEVIS Sbjct: 61 DAAKRGPGGAWAAEVIS 77 >gi|10835095 serum amyloid A4, constitutive [Homo sapiens] Length = 130 Score = 135 bits (341), Expect = 6e-33 Identities = 67/130 (51%), Positives = 91/130 (70%), Gaps = 8/130 (6%) Query: 1 MKLLTGLVFCSLVLSVSSRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNY 60 M+L TG+VFCSLV+ V+S S+ SF EA G DM RAY D+ +N+ S++Y +ARGNY Sbjct: 1 MRLFTGIVFCSLVMGVTSESWRSFFKEALQGVGDMGRAYWDIMISNHQNSNRYLYARGNY 60 Query: 61 DAAKRGPGGAWAAEVISNARENIQRL--------TGRGAEDSLADQAANKWGRSGRDPNH 112 DAA+RGPGG WAA++IS +R +Q L + EDS +++ A +WGRSG+DP+ Sbjct: 61 DAAQRGPGGVWAAKLISRSRVYLQGLIDYYLFGNSSTVLEDSKSNEKAEEWGRSGKDPDR 120 Query: 113 FRPAGLPEKY 122 FRP GLP+KY Sbjct: 121 FRPDGLPKKY 130 >gi|153267448 enolase 3 [Homo sapiens] Length = 434 Score = 28.1 bits (61), Expect = 1.7 Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 12/95 (12%) Query: 40 SDMREANYIGSDKYFHARG------NYDAAKRGPGGAWAAEVISN--ARENIQ-RLTGRG 90 S +EA IG++ Y H +G DA G G +A ++ N A E ++ + G Sbjct: 176 SSFKEAMRIGAEVYHHLKGVIKAKYGKDATNVGDEGGFAPNILENNEALELLKTAIQAAG 235 Query: 91 AEDSLA---DQAANKWGRSGRDPNHFRPAGLPEKY 122 D + D AA+++ R+G+ F+ P ++ Sbjct: 236 YPDKVVIGMDVAASEFYRNGKYDLDFKSPDDPARH 270 >gi|153267427 enolase 3 [Homo sapiens] Length = 434 Score = 28.1 bits (61), Expect = 1.7 Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 12/95 (12%) Query: 40 SDMREANYIGSDKYFHARG------NYDAAKRGPGGAWAAEVISN--ARENIQ-RLTGRG 90 S +EA IG++ Y H +G DA G G +A ++ N A E ++ + G Sbjct: 176 SSFKEAMRIGAEVYHHLKGVIKAKYGKDATNVGDEGGFAPNILENNEALELLKTAIQAAG 235 Query: 91 AEDSLA---DQAANKWGRSGRDPNHFRPAGLPEKY 122 D + D AA+++ R+G+ F+ P ++ Sbjct: 236 YPDKVVIGMDVAASEFYRNGKYDLDFKSPDDPARH 270 >gi|71044479 death inducer-obliterator 1 isoform c [Homo sapiens] Length = 2240 Score = 28.1 bits (61), Expect = 1.7 Identities = 14/39 (35%), Positives = 23/39 (58%) Query: 72 AAEVISNARENIQRLTGRGAEDSLADQAANKWGRSGRDP 110 AAE E + RL+ RGA+ +L ++ A++ G G+ P Sbjct: 1567 AAETGEGEGEPLSRLSARGAQGALPERDASRGGLVGQAP 1605 >gi|4758222 dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B isoform a [Homo sapiens] Length = 629 Score = 27.7 bits (60), Expect = 2.2 Identities = 14/49 (28%), Positives = 20/49 (40%) Query: 64 KRGPGGAWAAEVISNARENIQRLTGRGAEDSLADQAANKWGRSGRDPNH 112 +R PGG W R++ Q R ++ L Q GR +P H Sbjct: 348 ERLPGGGWTLRRTKELRKDYQGPGTRRLQEVLGVQTGGPGGRRAGEPGH 396 >gi|239754797 PREDICTED: hypothetical protein [Homo sapiens] Length = 170 Score = 27.3 bits (59), Expect = 2.9 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 5/46 (10%) Query: 79 ARENIQRLTGRGAEDSLADQAANKWGRSG-----RDPNHFRPAGLP 119 AR +R G G E+S AA GR+G R P+H GLP Sbjct: 99 ARRLSERRRGGGKEESRPGTAAAPGGRAGLYGGPRGPHHVSLPGLP 144 >gi|239743415 PREDICTED: hypothetical protein [Homo sapiens] Length = 170 Score = 27.3 bits (59), Expect = 2.9 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 5/46 (10%) Query: 79 ARENIQRLTGRGAEDSLADQAANKWGRSG-----RDPNHFRPAGLP 119 AR +R G G E+S AA GR+G R P+H GLP Sbjct: 99 ARRLSERRRGGGKEESRPGTAAAPGGRAGLYGGPRGPHHVSLPGLP 144 >gi|193082993 GTP binding protein 3 (mitochondrial) isoform III [Homo sapiens] Length = 471 Score = 27.3 bits (59), Expect = 2.9 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 3/46 (6%) Query: 55 HARGNYDAA---KRGPGGAWAAEVISNARENIQRLTGRGAEDSLAD 97 H +G DA K+ A AAE + AR ++ RLTG G + + D Sbjct: 416 HLQGCLDALGHYKQSKDLALAAEALRVARGHLTRLTGGGGTEEILD 461 >gi|193082991 GTP binding protein 3 (mitochondrial) isoform V [Homo sapiens] Length = 492 Score = 27.3 bits (59), Expect = 2.9 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 3/46 (6%) Query: 55 HARGNYDAA---KRGPGGAWAAEVISNARENIQRLTGRGAEDSLAD 97 H +G DA K+ A AAE + AR ++ RLTG G + + D Sbjct: 437 HLQGCLDALGHYKQSKDLALAAEALRVARGHLTRLTGGGGTEEILD 482 >gi|193082988 GTP binding protein 3 (mitochondrial) isoform IV [Homo sapiens] Length = 524 Score = 27.3 bits (59), Expect = 2.9 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 3/46 (6%) Query: 55 HARGNYDAA---KRGPGGAWAAEVISNARENIQRLTGRGAEDSLAD 97 H +G DA K+ A AAE + AR ++ RLTG G + + D Sbjct: 469 HLQGCLDALGHYKQSKDLALAAEALRVARGHLTRLTGGGGTEEILD 514 >gi|89276764 prostaglandin E receptor 3, subtype EP3 isoform 2 [Homo sapiens] Length = 402 Score = 26.6 bits (57), Expect = 4.9 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 5/51 (9%) Query: 42 MREANYIGSDKYFHARGNYDAAKRGPGGAWAAEVISNARENIQRLTGRGAE 92 M+E G D F R N+ G WA E + AR N+ R G G + Sbjct: 1 MKETRGYGGDAPFCTRLNHSYT-----GMWAPERSAEARGNLTRPPGSGED 46 >gi|38505180 prostaglandin E receptor 3, subtype EP3 isoform 5 [Homo sapiens] Length = 388 Score = 26.6 bits (57), Expect = 4.9 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 5/51 (9%) Query: 42 MREANYIGSDKYFHARGNYDAAKRGPGGAWAAEVISNARENIQRLTGRGAE 92 M+E G D F R N+ G WA E + AR N+ R G G + Sbjct: 1 MKETRGYGGDAPFCTRLNHSYT-----GMWAPERSAEARGNLTRPPGSGED 46 >gi|38505188 prostaglandin E receptor 3, subtype EP3 isoform 4 [Homo sapiens] Length = 390 Score = 26.6 bits (57), Expect = 4.9 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 5/51 (9%) Query: 42 MREANYIGSDKYFHARGNYDAAKRGPGGAWAAEVISNARENIQRLTGRGAE 92 M+E G D F R N+ G WA E + AR N+ R G G + Sbjct: 1 MKETRGYGGDAPFCTRLNHSYT-----GMWAPERSAEARGNLTRPPGSGED 46 >gi|38505186 prostaglandin E receptor 3, subtype EP3 isoform 8 [Homo sapiens] Length = 418 Score = 26.6 bits (57), Expect = 4.9 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 5/51 (9%) Query: 42 MREANYIGSDKYFHARGNYDAAKRGPGGAWAAEVISNARENIQRLTGRGAE 92 M+E G D F R N+ G WA E + AR N+ R G G + Sbjct: 1 MKETRGYGGDAPFCTRLNHSYT-----GMWAPERSAEARGNLTRPPGSGED 46 >gi|38505184 prostaglandin E receptor 3, subtype EP3 isoform 7 [Homo sapiens] Length = 365 Score = 26.6 bits (57), Expect = 4.9 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 5/51 (9%) Query: 42 MREANYIGSDKYFHARGNYDAAKRGPGGAWAAEVISNARENIQRLTGRGAE 92 M+E G D F R N+ G WA E + AR N+ R G G + Sbjct: 1 MKETRGYGGDAPFCTRLNHSYT-----GMWAPERSAEARGNLTRPPGSGED 46 >gi|38505182 prostaglandin E receptor 3, subtype EP3 isoform 6 [Homo sapiens] Length = 374 Score = 26.6 bits (57), Expect = 4.9 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 5/51 (9%) Query: 42 MREANYIGSDKYFHARGNYDAAKRGPGGAWAAEVISNARENIQRLTGRGAE 92 M+E G D F R N+ G WA E + AR N+ R G G + Sbjct: 1 MKETRGYGGDAPFCTRLNHSYT-----GMWAPERSAEARGNLTRPPGSGED 46 >gi|38505178 prostaglandin E receptor 3, subtype EP3 isoform 4 [Homo sapiens] Length = 390 Score = 26.6 bits (57), Expect = 4.9 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 5/51 (9%) Query: 42 MREANYIGSDKYFHARGNYDAAKRGPGGAWAAEVISNARENIQRLTGRGAE 92 M+E G D F R N+ G WA E + AR N+ R G G + Sbjct: 1 MKETRGYGGDAPFCTRLNHSYT-----GMWAPERSAEARGNLTRPPGSGED 46 >gi|38505176 prostaglandin E receptor 3, subtype EP3 isoform 3 [Homo sapiens] Length = 393 Score = 26.6 bits (57), Expect = 4.9 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 5/51 (9%) Query: 42 MREANYIGSDKYFHARGNYDAAKRGPGGAWAAEVISNARENIQRLTGRGAE 92 M+E G D F R N+ G WA E + AR N+ R G G + Sbjct: 1 MKETRGYGGDAPFCTRLNHSYT-----GMWAPERSAEARGNLTRPPGSGED 46 >gi|38505172 prostaglandin E receptor 3, subtype EP3 isoform 1 [Homo sapiens] Length = 425 Score = 26.6 bits (57), Expect = 4.9 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 5/51 (9%) Query: 42 MREANYIGSDKYFHARGNYDAAKRGPGGAWAAEVISNARENIQRLTGRGAE 92 M+E G D F R N+ G WA E + AR N+ R G G + Sbjct: 1 MKETRGYGGDAPFCTRLNHSYT-----GMWAPERSAEARGNLTRPPGSGED 46 >gi|186659506 prostaglandin E receptor 3, subtype EP3 isoform 4 [Homo sapiens] Length = 390 Score = 26.6 bits (57), Expect = 4.9 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 5/51 (9%) Query: 42 MREANYIGSDKYFHARGNYDAAKRGPGGAWAAEVISNARENIQRLTGRGAE 92 M+E G D F R N+ G WA E + AR N+ R G G + Sbjct: 1 MKETRGYGGDAPFCTRLNHSYT-----GMWAPERSAEARGNLTRPPGSGED 46 >gi|149944451 zinc finger, SWIM domain containing 5 [Homo sapiens] Length = 1185 Score = 26.6 bits (57), Expect = 4.9 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 11/58 (18%) Query: 50 SDKYFHARGNYDAAKRGPGGAWAAEVISNARENIQRLTGRGAEDSLADQA----ANKW 103 S + H RG+ AA G GG ++ ++ AR ++Q DSL D A A KW Sbjct: 27 SPQAHHPRGSPGAAGGGAGGVGSSCLVLGARPHLQ-------PDSLLDCAAKTVAEKW 77 >gi|45356151 non-SMC condensin II complex, subunit D3 [Homo sapiens] Length = 1498 Score = 26.2 bits (56), Expect = 6.5 Identities = 13/31 (41%), Positives = 18/31 (58%) Query: 68 GGAWAAEVISNARENIQRLTGRGAEDSLADQ 98 G W+ EVIS+A + +QRL AE +Q Sbjct: 787 GFQWSLEVISSAVDALQRLCRASAETPAEEQ 817 >gi|19923830 pre-B-cell leukemia homeobox interacting protein 1 [Homo sapiens] Length = 731 Score = 26.2 bits (56), Expect = 6.5 Identities = 16/69 (23%), Positives = 29/69 (42%) Query: 43 REANYIGSDKYFHARGNYDAAKRGPGGAWAAEVISNARENIQRLTGRGAEDSLADQAANK 102 R+ +GS + R DA++ P A AE+ + +Q L G + ++ A+ Sbjct: 400 RQRRLLGSVQQDLERSLQDASRGDPAHAGLAELGHRLAQKLQGLENWGQDPGVSANASKA 459 Query: 103 WGRSGRDPN 111 W + N Sbjct: 460 WHQKSHFQN 468 >gi|14211943 lysyl oxidase-like 3 precursor [Homo sapiens] Length = 753 Score = 25.8 bits (55), Expect = 8.4 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 11/66 (16%) Query: 53 YFHARGNYDAAKRGPGGAWAAEVISNARENIQRLTGRGAEDSLADQAANKWGRSGRDPNH 112 + A G +AK GPG R + L+ G E S+ + A+ WG S D H Sbjct: 88 FTEATGWTHSAKYGPG---------TGRIWLDNLSCSGTEQSVTECASRGWGNS--DCTH 136 Query: 113 FRPAGL 118 AG+ Sbjct: 137 DEDAGV 142 >gi|33356174 pinin, desmosome associated protein [Homo sapiens] Length = 717 Score = 25.8 bits (55), Expect = 8.4 Identities = 13/28 (46%), Positives = 16/28 (57%) Query: 72 AAEVISNARENIQRLTGRGAEDSLADQA 99 A E + N ENI++LTGR D QA Sbjct: 15 AKESLKNVDENIRKLTGRDPNDVRPIQA 42 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.319 0.134 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,740,009 Number of Sequences: 37866 Number of extensions: 185044 Number of successful extensions: 384 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 19 Number of HSP's that attempted gapping in prelim test: 372 Number of HSP's gapped (non-prelim): 30 length of query: 122 length of database: 18,247,518 effective HSP length: 89 effective length of query: 33 effective length of database: 14,877,444 effective search space: 490955652 effective search space used: 490955652 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.