Guide to the Human Genome
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Name: PHTF2 Sequence: fasta or formatted (352aa) NCBI GI: 188219575
Description:

putative homeodomain transcription factor 2 isoform 4

Referenced in:

Homeobox and Related Proteins

Other entries for this name:
alt prot [747aa] putative homeodomain transcription factor 2 isoform 2
alt prot [751aa] putative homeodomain transcription factor 2 isoform 1
alt prot [747aa] putative homeodomain transcription factor 2 isoform 2
alt prot [356aa] putative homeodomain transcription factor 2 isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.5         16           2
 C cysteine            1.1          4           1
 D aspartate           4.3         15           1
 E glutamate           5.7         20           2
 F phenylalanine       3.7         13           3
 G glycine             6.5         23           2
 H histidine           3.7         13           2
 I isoleucine          5.4         19           1
 K lysine              8.0         28           2
 L leucine             7.7         27           3
 M methionine          0.6          2           1
 N asparagine          3.1         11           1
 P proline             4.5         16           2
 Q glutamine           3.4         12           2
 R arginine            6.2         22           3
 S serine              9.1         32           2
 T threonine           8.5         30           2
 V valine              8.2         29           2
 W tryptophan          2.6          9           2
 Y tyrosine            3.1         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   putative homeodomain transcription factor 2 isoform... 
PHTF2                 0.993   putative homeodomain transcription factor 2 isoform...
PHTF2                 0.951   putative homeodomain transcription factor 2 isoform...
PHTF2                 0.951   putative homeodomain transcription factor 2 isoform...
PHTF2                 0.943   putative homeodomain transcription factor 2 isoform...
PHTF1                 0.342   putative homeodomain transcription factor 1 
TACC2                 0.016   transforming, acidic coiled-coil containing protein...
FLG                   0.011   filaggrin 
CMYA5                 0.010   cardiomyopathy associated 5 
BDP1                  0.010   transcription factor-like nuclear regulator 
BRCA1                 0.009   breast cancer 1, early onset isoform 3 
BRCA1                 0.009   breast cancer 1, early onset isoform 1 
LOC100133714          0.009   PREDICTED: similar to Mucin-12, partial 
AR                    0.009   androgen receptor isoform 2 
AR                    0.009   androgen receptor isoform 1 
BRCA1                 0.007   breast cancer 1, early onset isoform 5 
BRCA1                 0.007   breast cancer 1, early onset isoform 4 
WHSC1                 0.007   Wolf-Hirschhorn syndrome candidate 1 protein isoform...
WHSC1                 0.007   Wolf-Hirschhorn syndrome candidate 1 protein isoform...
WHSC1                 0.007   Wolf-Hirschhorn syndrome candidate 1 protein isoform...
WHSC1                 0.007   Wolf-Hirschhorn syndrome candidate 1 protein isofor...
LOC100132713          0.007   PREDICTED: similar to hCG1654128 
LOC100132713          0.007   PREDICTED: similar to hCG1654128 
SCAMP4                0.007   secretory carrier membrane protein 4 
SLC39A5               0.007   solute carrier family 39 (metal ion transporter), m...
SLC39A5               0.007   solute carrier family 39 (metal ion transporter), m...
TBL3                  0.007   transducin beta-like 3 
PALM2                 0.006   paralemmin 2 isoform a 
PALM2-AKAP2           0.006   PALM2-AKAP2 protein isoform 2 
PALM2-AKAP2           0.006   PALM2-AKAP2 protein isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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