Guide to the Human Genome
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Name: PHTF2 Sequence: fasta or formatted (747aa) NCBI GI: 188219571
Description:

putative homeodomain transcription factor 2 isoform 2

Referenced in:

Homeobox and Related Proteins

Other entries for this name:
alt mRNA [747aa] putative homeodomain transcription factor 2 isoform 2
alt prot [751aa] putative homeodomain transcription factor 2 isoform 1
alt prot [356aa] putative homeodomain transcription factor 2 isoform 3
alt prot [352aa] putative homeodomain transcription factor 2 isoform 4
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.6         34           2
 C cysteine            2.0         15           2
 D aspartate           4.0         30           2
 E glutamate           6.0         45           2
 F phenylalanine       4.1         31           3
 G glycine             5.1         38           2
 H histidine           3.6         27           2
 I isoleucine          5.8         43           2
 K lysine              7.2         54           2
 L leucine            11.0         82           3
 M methionine          1.2          9           1
 N asparagine          3.7         28           2
 P proline             3.9         29           2
 Q glutamine           3.2         24           2
 R arginine            5.4         40           3
 S serine             10.2         76           3
 T threonine           6.4         48           2
 V valine              8.0         60           2
 W tryptophan          2.3         17           2
 Y tyrosine            2.3         17           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   putative homeodomain transcription factor 2 isoform... 
PHTF2                 1.000   putative homeodomain transcription factor 2 isoform...
PHTF2                 0.996   putative homeodomain transcription factor 2 isoform...
PHTF1                 0.507   putative homeodomain transcription factor 1 
PHTF2                 0.447   putative homeodomain transcription factor 2 isoform...
PHTF2                 0.443   putative homeodomain transcription factor 2 isoform...
FLG                   0.009   filaggrin 
AP3B1                 0.009   adaptor-related protein complex 3, beta 1 subunit [H...
MUC21                 0.008   mucin 21 
WHSC1                 0.008   Wolf-Hirschhorn syndrome candidate 1 protein isoform...
WHSC1                 0.008   Wolf-Hirschhorn syndrome candidate 1 protein isoform...
WHSC1                 0.008   Wolf-Hirschhorn syndrome candidate 1 protein isoform...
WHSC1                 0.008   Wolf-Hirschhorn syndrome candidate 1 protein isofor...
TACC2                 0.007   transforming, acidic coiled-coil containing protein...
LOC100132713          0.007   PREDICTED: similar to hCG1654128 
ATRX                  0.007   transcriptional regulator ATRX isoform 2 
ATRX                  0.007   transcriptional regulator ATRX isoform 1 
PARG                  0.007   poly (ADP-ribose) glycohydrolase 
CWC22                 0.006   CWC22 spliceosome-associated protein homolog 
PRIC285               0.005   PPAR-alpha interacting complex protein 285 isoform ...
LOC100132713          0.005   PREDICTED: similar to hCG1654128 
PALM2-AKAP2           0.005   PALM2-AKAP2 protein isoform 2 
PALM2-AKAP2           0.005   PALM2-AKAP2 protein isoform 1 
TNRC6B                0.005   trinucleotide repeat containing 6B isoform 2 
TNRC6B                0.005   trinucleotide repeat containing 6B isoform 1 
MAP1B                 0.005   microtubule-associated protein 1B 
CMYA5                 0.005   cardiomyopathy associated 5 
BDP1                  0.005   transcription factor-like nuclear regulator 
ZNF286B               0.004   zinc finger protein 286B 
HTATSF1               0.004   HIV-1 Tat specific factor 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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