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Search of human proteins with 187936961
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|187936961 transmembrane protein 129 isoform a [Homo sapiens]
(362 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|187936961 transmembrane protein 129 isoform a [Homo sapiens] 748 0.0
gi|19923909 transmembrane protein 129 isoform b [Homo sapiens] 462 e-130
gi|38490571 keratin associated protein 10-7 [Homo sapiens] 34 0.18
gi|105990535 coagulation factor V precursor [Homo sapiens] 34 0.23
gi|38490568 keratin associated protein 10-4 [Homo sapiens] 34 0.23
gi|38490587 keratin associated protein 10-12 [Homo sapiens] 33 0.40
gi|154759249 keratin associated protein 10-11 [Homo sapiens] 31 2.0
gi|63053517 keratin associated protein 10-5 [Homo sapiens] 30 3.4
gi|32140182 keratin associated protein 10-10 [Homo sapiens] 30 3.4
gi|5453557 ariadne homolog 2 [Homo sapiens] 30 4.4
gi|5902054 ring finger protein 5 [Homo sapiens] 29 5.7
gi|22907025 apolipoprotein B mRNA editing enzyme, catalytic poly... 29 5.7
gi|4758010 clock [Homo sapiens] 29 7.5
gi|169217313 PREDICTED: similar to paraneoplastic antigen MA1 [H... 29 7.5
gi|169216516 PREDICTED: similar to paraneoplastic antigen MA1 [H... 29 7.5
gi|239746976 PREDICTED: similar to paraneoplastic antigen MA1 [H... 29 7.5
gi|32880199 makorin ring finger protein 2 [Homo sapiens] 29 7.5
gi|63053512 keratin associated protein 10-1 [Homo sapiens] 29 7.5
gi|46250735 keratin associated protein 10-2 [Homo sapiens] 29 7.5
gi|148727298 keratin associated protein 10-6 [Homo sapiens] 28 9.8
gi|52487176 tripartite motif-containing 37 protein [Homo sapiens] 28 9.8
gi|15147333 tripartite motif-containing 37 protein [Homo sapiens] 28 9.8
>gi|187936961 transmembrane protein 129 isoform a [Homo sapiens]
Length = 362
Score = 748 bits (1930), Expect = 0.0
Identities = 362/362 (100%), Positives = 362/362 (100%)
Query: 1 MDSPEVTFTLAYLVFAVCFVFTPNEFHAAGLTVQNLLSGWLGSEDAAFVPFHLRRTAATL 60
MDSPEVTFTLAYLVFAVCFVFTPNEFHAAGLTVQNLLSGWLGSEDAAFVPFHLRRTAATL
Sbjct: 1 MDSPEVTFTLAYLVFAVCFVFTPNEFHAAGLTVQNLLSGWLGSEDAAFVPFHLRRTAATL 60
Query: 61 LCHSLLPLGYYVGMCLAASEKRLHALSQAPEAWRLFLLLAVTLPSIACILIYYWSRDRWA 120
LCHSLLPLGYYVGMCLAASEKRLHALSQAPEAWRLFLLLAVTLPSIACILIYYWSRDRWA
Sbjct: 61 LCHSLLPLGYYVGMCLAASEKRLHALSQAPEAWRLFLLLAVTLPSIACILIYYWSRDRWA 120
Query: 121 CHPLARTLALYALPQSGWQAVASSVNTEFRRIDKFATGAPGARVIVTDTWVMKVTTYRVH 180
CHPLARTLALYALPQSGWQAVASSVNTEFRRIDKFATGAPGARVIVTDTWVMKVTTYRVH
Sbjct: 121 CHPLARTLALYALPQSGWQAVASSVNTEFRRIDKFATGAPGARVIVTDTWVMKVTTYRVH 180
Query: 181 VAQQQDVHLTVTESRQHELSPDSNLPVQLLTIRVASTNPAVQAFDIWLNSTEYGELCEKL 240
VAQQQDVHLTVTESRQHELSPDSNLPVQLLTIRVASTNPAVQAFDIWLNSTEYGELCEKL
Sbjct: 181 VAQQQDVHLTVTESRQHELSPDSNLPVQLLTIRVASTNPAVQAFDIWLNSTEYGELCEKL 240
Query: 241 RAPIRRAAHVVIHQSLGDLFLETFASLVEVNPAYSVPSSQELEACIGCMQTRASVKLVKT 300
RAPIRRAAHVVIHQSLGDLFLETFASLVEVNPAYSVPSSQELEACIGCMQTRASVKLVKT
Sbjct: 241 RAPIRRAAHVVIHQSLGDLFLETFASLVEVNPAYSVPSSQELEACIGCMQTRASVKLVKT 300
Query: 301 CQEAATGECQQCYCRPMWCLTCMGKWFASRQDPLRPDTWLASRVPCPTCRARFCILDVCT 360
CQEAATGECQQCYCRPMWCLTCMGKWFASRQDPLRPDTWLASRVPCPTCRARFCILDVCT
Sbjct: 301 CQEAATGECQQCYCRPMWCLTCMGKWFASRQDPLRPDTWLASRVPCPTCRARFCILDVCT 360
Query: 361 VR 362
VR
Sbjct: 361 VR 362
>gi|19923909 transmembrane protein 129 isoform b [Homo sapiens]
Length = 232
Score = 462 bits (1190), Expect = e-130
Identities = 227/227 (100%), Positives = 227/227 (100%)
Query: 1 MDSPEVTFTLAYLVFAVCFVFTPNEFHAAGLTVQNLLSGWLGSEDAAFVPFHLRRTAATL 60
MDSPEVTFTLAYLVFAVCFVFTPNEFHAAGLTVQNLLSGWLGSEDAAFVPFHLRRTAATL
Sbjct: 1 MDSPEVTFTLAYLVFAVCFVFTPNEFHAAGLTVQNLLSGWLGSEDAAFVPFHLRRTAATL 60
Query: 61 LCHSLLPLGYYVGMCLAASEKRLHALSQAPEAWRLFLLLAVTLPSIACILIYYWSRDRWA 120
LCHSLLPLGYYVGMCLAASEKRLHALSQAPEAWRLFLLLAVTLPSIACILIYYWSRDRWA
Sbjct: 61 LCHSLLPLGYYVGMCLAASEKRLHALSQAPEAWRLFLLLAVTLPSIACILIYYWSRDRWA 120
Query: 121 CHPLARTLALYALPQSGWQAVASSVNTEFRRIDKFATGAPGARVIVTDTWVMKVTTYRVH 180
CHPLARTLALYALPQSGWQAVASSVNTEFRRIDKFATGAPGARVIVTDTWVMKVTTYRVH
Sbjct: 121 CHPLARTLALYALPQSGWQAVASSVNTEFRRIDKFATGAPGARVIVTDTWVMKVTTYRVH 180
Query: 181 VAQQQDVHLTVTESRQHELSPDSNLPVQLLTIRVASTNPAVQAFDIW 227
VAQQQDVHLTVTESRQHELSPDSNLPVQLLTIRVASTNPAVQAFDIW
Sbjct: 181 VAQQQDVHLTVTESRQHELSPDSNLPVQLLTIRVASTNPAVQAFDIW 227
>gi|38490571 keratin associated protein 10-7 [Homo sapiens]
Length = 370
Score = 34.3 bits (77), Expect = 0.18
Identities = 26/75 (34%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Query: 278 SSQELEACIGCMQTRAS-VKLVKTCQEAATGECQQCYCRPMWCLTCMGKWFASRQDPLRP 336
SSQ + C C+ V V C A+T CQQ C+P C T + +S RP
Sbjct: 258 SSQSQQGC--CVPVCCKPVCCVPVCSGASTSCCQQSSCQPACCTTSCCRPSSSVSLLCRP 315
Query: 337 DTWLASRVPCPTCRA 351
A VP P+C A
Sbjct: 316 VCRPACCVPVPSCCA 330
>gi|105990535 coagulation factor V precursor [Homo sapiens]
Length = 2224
Score = 33.9 bits (76), Expect = 0.23
Identities = 42/174 (24%), Positives = 69/174 (39%), Gaps = 38/174 (21%)
Query: 72 VGMCLAASEKRLHALSQAPEAWRLFLLLAVTLPSIACILIYYWSRDRWACHPLARTLALY 131
+G L + LH S P R F+LL +T YY + R
Sbjct: 1745 IGPLLICQKGILHKDSNMPMDMREFVLLFMTFDEKKSW--YYEKKSR------------- 1789
Query: 132 ALPQSGWQAVASSVNT--EFRRIDKFATGAPGARVIVTDTWVMKVTTYRVHVAQQQDVHL 189
S W+ +S + EF I+ PG ++ + WV + +++ QD+H+
Sbjct: 1790 ----SSWRLTSSEMKKSHEFHAINGMIYSLPGLKMYEQE-WVR---LHLLNIGGSQDIHV 1841
Query: 190 ------TVTES--RQHELSPDSNLPVQLLTIRVASTNPAVQAFDIWLNSTEYGE 235
T+ E+ +QH+L LP T+ + ++ P WL +TE GE
Sbjct: 1842 VHFHGQTLLENGNKQHQLGVWPLLPGSFKTLEMKASKPG-----WWLLNTEVGE 1890
>gi|38490568 keratin associated protein 10-4 [Homo sapiens]
Length = 401
Score = 33.9 bits (76), Expect = 0.23
Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Query: 278 SSQELEACIGCMQTRAS-VKLVKTCQEAATGECQQCYCRPMWCLTCMGKWFASRQDPLRP 336
SSQ + C C+ V V C A++ CQQ C+P C T + +S RP
Sbjct: 310 SSQSQQGC--CVPVCCKPVSCVPVCSGASSSCCQQSSCQPACCTTSCCRPSSSVSLLCRP 367
Query: 337 DTWLASRVPCPTCRA 351
A VP P+C A
Sbjct: 368 VCRPACCVPVPSCCA 382
>gi|38490587 keratin associated protein 10-12 [Homo sapiens]
Length = 245
Score = 33.1 bits (74), Expect = 0.40
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Query: 272 PAYSVPSSQELEACIG-CMQTRASVKLVKTCQEAATGECQQCYCRPMWCLTCMGKWFASR 330
PA + S + C+ C + + V C A++ CQQ C+P C T + +S
Sbjct: 139 PACCISSPCQQSCCVPVCCKP---ICCVPVCSGASSLCCQQSSCQPACCTTSCCRPSSSV 195
Query: 331 QDPLRPDTWLASRVPCPTC 349
RP A RVP P+C
Sbjct: 196 SLLCRPVCRPARRVPVPSC 214
>gi|154759249 keratin associated protein 10-11 [Homo sapiens]
Length = 298
Score = 30.8 bits (68), Expect = 2.0
Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 14/87 (16%)
Query: 272 PAYSVPSSQELEACIG-CMQTR--ASVKLVKTCQEAATGECQQCYCRPMWCLTCMGKWFA 328
PA SS + C+ C +T + V C A++ CQQ C+P C T
Sbjct: 176 PACCTSSSYQQACCVPVCCKTVYCKPICCVPVCSRASSSRCQQPSCQPACCTTSC----- 230
Query: 329 SRQDPLRPDTWLASRVPCPTCRARFCI 355
RP + S + P CR+ C+
Sbjct: 231 -----CRPSS-SVSLLCHPVCRSTCCV 251
>gi|63053517 keratin associated protein 10-5 [Homo sapiens]
Length = 271
Score = 30.0 bits (66), Expect = 3.4
Identities = 19/54 (35%), Positives = 24/54 (44%)
Query: 298 VKTCQEAATGECQQCYCRPMWCLTCMGKWFASRQDPLRPDTWLASRVPCPTCRA 351
V C A+T CQQ C+P C T + +S RP A VP +C A
Sbjct: 189 VPVCSGASTSCCQQSSCQPACCTTSCCRPSSSVSLLCRPICRPACCVPISSCCA 242
>gi|32140182 keratin associated protein 10-10 [Homo sapiens]
Length = 251
Score = 30.0 bits (66), Expect = 3.4
Identities = 19/58 (32%), Positives = 24/58 (41%)
Query: 294 SVKLVKTCQEAATGECQQCYCRPMWCLTCMGKWFASRQDPLRPDTWLASRVPCPTCRA 351
SV V C A+T CQQ C+P C + +S P VP P+C A
Sbjct: 154 SVCYVPVCSGASTSCCQQSSCQPACCTASCCRPSSSVSLLCHPVCKSTCCVPVPSCGA 211
>gi|5453557 ariadne homolog 2 [Homo sapiens]
Length = 493
Score = 29.6 bits (65), Expect = 4.4
Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 7/55 (12%)
Query: 268 VEVNPAYSVPSSQELEACIGCMQTRASVKLVKTCQEAATGECQQCYCRPMWCLTC 322
V+ NP+ VP+S C CMQ L+ CQ +CR W C
Sbjct: 122 VQPNPSKHVPTSHPPHHCAVCMQFVRKENLLSLA-------CQHQFCRSCWEQHC 169
Score = 28.5 bits (62), Expect = 9.8
Identities = 21/83 (25%), Positives = 31/83 (37%), Gaps = 10/83 (12%)
Query: 276 VPSSQELEACIGC--------MQTRASVKLVKTCQEAATGECQQCYCRPMWCLTCMGKWF 327
V S +L+ C G + RA C E +C+Q Y P C T + KW
Sbjct: 219 VESHYQLQLCPGADCPMVIRVQEPRARRVQCNRCNEVFCFKCRQMYHAPTDCAT-IRKWL 277
Query: 328 ASRQDPLRPDTWLASRV-PCPTC 349
D ++++ CP C
Sbjct: 278 TKCADDSETANYISAHTKDCPKC 300
>gi|5902054 ring finger protein 5 [Homo sapiens]
Length = 180
Score = 29.3 bits (64), Expect = 5.7
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 15/54 (27%)
Query: 298 VKTCQEAATGECQQCYCRPMWCLTCMGKWFASRQDPLRPDTWLASRVPCPTCRA 351
++T +EA C YC P C+ +W +R + R CP C+A
Sbjct: 31 LETAREAVVSVCGHLYCWP-----CLHQWLETRPE----------RQECPVCKA 69
>gi|22907025 apolipoprotein B mRNA editing enzyme, catalytic
polypeptide-like 3B [Homo sapiens]
Length = 382
Score = 29.3 bits (64), Expect = 5.7
Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 4/46 (8%)
Query: 311 QCYCRPMW-CLTCMGKWFASRQDPLRPD---TWLASRVPCPTCRAR 352
Q Y +P + C WF Q P TW S PCP C A+
Sbjct: 58 QVYFKPQYHAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAK 103
>gi|4758010 clock [Homo sapiens]
Length = 846
Score = 28.9 bits (63), Expect = 7.5
Identities = 36/120 (30%), Positives = 54/120 (45%), Gaps = 30/120 (25%)
Query: 132 ALPQSGWQAVASSVNTEFRRIDKFATG---------APGA--RVIVTDTWVMK--VTTYR 178
++PQ+ Q+ A + T+ R+I +F+ G AP A V+V T +M VT Y
Sbjct: 681 SMPQNSTQSAAVTTFTQDRQI-RFSQGQQLVTKLVTAPVACGAVMVPSTMLMGQVVTAYP 739
Query: 179 VHVAQQQDVH-LTVTESRQHELSPDSNL--------------PVQLL-TIRVASTNPAVQ 222
QQQ L+VT+ +Q + S + L P Q L T R+ NP+ Q
Sbjct: 740 TFATQQQQSQTLSVTQQQQQQSSQEQQLTSVQQPSQAQLTQPPQQFLQTSRLLHGNPSTQ 799
>gi|169217313 PREDICTED: similar to paraneoplastic antigen MA1 [Homo
sapiens]
Length = 601
Score = 28.9 bits (63), Expect = 7.5
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 6/31 (19%)
Query: 319 CLTCMGKWFASRQDPLRPDTWLASRVPCPTC 349
CLT +G+ F SR DTW+ SR+ TC
Sbjct: 369 CLTALGQVFRSR------DTWMTSRMKFLTC 393
>gi|169216516 PREDICTED: similar to paraneoplastic antigen MA1 [Homo
sapiens]
Length = 541
Score = 28.9 bits (63), Expect = 7.5
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 6/31 (19%)
Query: 319 CLTCMGKWFASRQDPLRPDTWLASRVPCPTC 349
CLT +G+ F SR DTW+ SR+ TC
Sbjct: 309 CLTALGQVFRSR------DTWMTSRMKFLTC 333
>gi|239746976 PREDICTED: similar to paraneoplastic antigen MA1 [Homo
sapiens]
Length = 601
Score = 28.9 bits (63), Expect = 7.5
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 6/31 (19%)
Query: 319 CLTCMGKWFASRQDPLRPDTWLASRVPCPTC 349
CLT +G+ F SR DTW+ SR+ TC
Sbjct: 369 CLTALGQVFRSR------DTWMTSRMKFLTC 393
>gi|32880199 makorin ring finger protein 2 [Homo sapiens]
Length = 416
Score = 28.9 bits (63), Expect = 7.5
Identities = 26/120 (21%), Positives = 48/120 (40%), Gaps = 18/120 (15%)
Query: 233 YGELCEKLRAPIRRAAHVVIHQSLGDLFLETFASLVEVNPAYSVPSSQELEACIGCMQTR 292
+GE+CE R + ++ + + TF E+ A++ +SQ+ + C CM+
Sbjct: 189 HGEVCEICRLQVLHPFDPEQRKAHEKICMLTFEH--EMEKAFAFQASQD-KVCSICMEVI 245
Query: 293 ASVKLVKTCQEAATGECQQCYCRPMWCLTCMGKWFASRQ--DPLRPDTWLASRVPCPTCR 350
+ C YC L+C+ +W ++Q +P+ CP CR
Sbjct: 246 LEKASASERRFGILSNCNHTYC-----LSCIRQWRCAKQFENPIIKS--------CPECR 292
>gi|63053512 keratin associated protein 10-1 [Homo sapiens]
Length = 282
Score = 28.9 bits (63), Expect = 7.5
Identities = 18/54 (33%), Positives = 24/54 (44%)
Query: 298 VKTCQEAATGECQQCYCRPMWCLTCMGKWFASRQDPLRPDTWLASRVPCPTCRA 351
V C A+T CQQ C+P C T + +S RP A +P +C A
Sbjct: 200 VPVCSGASTSCCQQSSCQPACCTTSCCRPSSSVSLLCRPVCRPACCMPVSSCCA 253
>gi|46250735 keratin associated protein 10-2 [Homo sapiens]
Length = 255
Score = 28.9 bits (63), Expect = 7.5
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 13/68 (19%)
Query: 294 SVKLVKTCQEAATGECQQCYCRPMWCLTCMGKWFASRQDPLRPDTWLASRVPC-PTCRAR 352
+V V TC E+++ CQQ C+P C + P + ++ V C P C
Sbjct: 148 AVCCVPTCSESSSSCCQQSSCQPACCTS----------SPCQQSCCVS--VCCKPVCCKS 195
Query: 353 FCILDVCT 360
C + VC+
Sbjct: 196 ICCVPVCS 203
>gi|148727298 keratin associated protein 10-6 [Homo sapiens]
Length = 365
Score = 28.5 bits (62), Expect = 9.8
Identities = 17/54 (31%), Positives = 22/54 (40%)
Query: 298 VKTCQEAATGECQQCYCRPMWCLTCMGKWFASRQDPLRPDTWLASRVPCPTCRA 351
V C A+T CQQ C+P C + +S P VP P+C A
Sbjct: 272 VPVCSGASTSCCQQSSCQPACCTASCCRPSSSVSLLCHPVCKSTCCVPVPSCGA 325
>gi|52487176 tripartite motif-containing 37 protein [Homo sapiens]
Length = 964
Score = 28.5 bits (62), Expect = 9.8
Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 25/88 (28%)
Query: 275 SVPSSQELEACIGCMQTRASVKLVKTCQEAATGECQQCYCRPMWCLTCMGKWFASRQDPL 334
SV S E+ C CM+ +L +C + C +C+ +W +
Sbjct: 5 SVESIAEVFRCFICMEKLRDARLCP-------------HCSKLCCFSCIRRWLTEQ---- 47
Query: 335 RPDTWLASRVPCPTCRARFCILDVCTVR 362
R CP CRA + ++ R
Sbjct: 48 --------RAQCPHCRAPLQLRELVNCR 67
>gi|15147333 tripartite motif-containing 37 protein [Homo sapiens]
Length = 964
Score = 28.5 bits (62), Expect = 9.8
Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 25/88 (28%)
Query: 275 SVPSSQELEACIGCMQTRASVKLVKTCQEAATGECQQCYCRPMWCLTCMGKWFASRQDPL 334
SV S E+ C CM+ +L +C + C +C+ +W +
Sbjct: 5 SVESIAEVFRCFICMEKLRDARLCP-------------HCSKLCCFSCIRRWLTEQ---- 47
Query: 335 RPDTWLASRVPCPTCRARFCILDVCTVR 362
R CP CRA + ++ R
Sbjct: 48 --------RAQCPHCRAPLQLRELVNCR 67
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.326 0.134 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,032,595
Number of Sequences: 37866
Number of extensions: 595240
Number of successful extensions: 1906
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1873
Number of HSP's gapped (non-prelim): 56
length of query: 362
length of database: 18,247,518
effective HSP length: 104
effective length of query: 258
effective length of database: 14,309,454
effective search space: 3691839132
effective search space used: 3691839132
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.