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Search of human proteins with 187761314
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|187761314 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a-like 1 [Homo sapiens]
(954 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|21071060 SWI/SNF-related matrix-associated actin-dependent re... 1884 0.0
gi|187761314 SWI/SNF-related matrix-associated actin-dependent r... 1884 0.0
gi|62860046 zinc finger, RAN-binding domain containing 3 [Homo s... 351 2e-96
gi|27477070 BTAF1 RNA polymerase II, B-TFIID transcription facto... 138 3e-32
gi|21071058 SWI/SNF-related matrix-associated actin-dependent re... 131 3e-30
gi|164419749 SWI/SNF-related matrix-associated actin-dependent r... 130 4e-30
gi|148612870 chromodomain helicase DNA binding protein 1-like [H... 128 3e-29
gi|21071044 SWI/SNF-related matrix-associated actin-dependent re... 128 3e-29
gi|118421089 chromodomain helicase DNA binding protein 2 isoform... 122 2e-27
gi|51599156 chromodomain helicase DNA binding protein 4 [Homo sa... 121 3e-27
gi|192807323 SWI/SNF-related matrix-associated actin-dependent r... 119 2e-26
gi|192807320 SWI/SNF-related matrix-associated actin-dependent r... 119 2e-26
gi|192807318 SWI/SNF-related matrix-associated actin-dependent r... 119 2e-26
gi|192807316 SWI/SNF-related matrix-associated actin-dependent r... 119 2e-26
gi|192807314 SWI/SNF-related matrix-associated actin-dependent r... 119 2e-26
gi|192807312 SWI/SNF-related matrix-associated actin-dependent r... 119 2e-26
gi|21071056 SWI/SNF-related matrix-associated actin-dependent re... 119 2e-26
gi|48255900 SWI/SNF-related matrix-associated actin-dependent re... 119 2e-26
gi|48255898 SWI/SNF-related matrix-associated actin-dependent re... 119 2e-26
gi|190358534 SWI/SNF-related, matrix-associated actin-dependent ... 118 2e-26
gi|190358536 SWI/SNF-related, matrix-associated actin-dependent ... 117 4e-26
gi|190358532 SWI/SNF-related, matrix-associated actin-dependent ... 117 4e-26
gi|54112403 chromodomain helicase DNA binding protein 7 [Homo sa... 115 1e-25
gi|24308089 chromodomain helicase DNA binding protein 5 [Homo sa... 114 3e-25
gi|29244924 chromodomain helicase DNA binding protein 6 [Homo sa... 113 7e-25
gi|52630326 chromodomain helicase DNA binding protein 3 isoform ... 112 2e-24
gi|52630322 chromodomain helicase DNA binding protein 3 isoform ... 112 2e-24
gi|158420731 chromodomain helicase DNA binding protein 3 isoform... 112 2e-24
gi|21914927 helicase, lymphoid-specific [Homo sapiens] 111 4e-24
gi|68299795 chromodomain helicase DNA binding protein 1 [Homo sa... 110 8e-24
>gi|21071060 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a-like 1 [Homo sapiens]
Length = 954
Score = 1884 bits (4880), Expect = 0.0
Identities = 954/954 (100%), Positives = 954/954 (100%)
Query: 1 MSLPLTEEQRKKIEENRQKALARRAEKLLAEQHQRTSSGTSIAGNPFQAKQGPSQNFPRE 60
MSLPLTEEQRKKIEENRQKALARRAEKLLAEQHQRTSSGTSIAGNPFQAKQGPSQNFPRE
Sbjct: 1 MSLPLTEEQRKKIEENRQKALARRAEKLLAEQHQRTSSGTSIAGNPFQAKQGPSQNFPRE 60
Query: 61 SCKPVSHGVIFKQQNLSSSSNADQRPHDSHSFQAKGIWKKPEEMPTACPGHSPRSQMALT 120
SCKPVSHGVIFKQQNLSSSSNADQRPHDSHSFQAKGIWKKPEEMPTACPGHSPRSQMALT
Sbjct: 61 SCKPVSHGVIFKQQNLSSSSNADQRPHDSHSFQAKGIWKKPEEMPTACPGHSPRSQMALT 120
Query: 121 GISPPLAQSPPEVPKQQLLSYELGQGHAQASPEIRFTPFANPTHKPLAKPKSSQETPAHS 180
GISPPLAQSPPEVPKQQLLSYELGQGHAQASPEIRFTPFANPTHKPLAKPKSSQETPAHS
Sbjct: 121 GISPPLAQSPPEVPKQQLLSYELGQGHAQASPEIRFTPFANPTHKPLAKPKSSQETPAHS 180
Query: 181 SGQPPRDAKLEAKTAKASPSGQNISYIHSSSESVTPRTEGRLQQKSGSSVQKGVNSQKGK 240
SGQPPRDAKLEAKTAKASPSGQNISYIHSSSESVTPRTEGRLQQKSGSSVQKGVNSQKGK
Sbjct: 181 SGQPPRDAKLEAKTAKASPSGQNISYIHSSSESVTPRTEGRLQQKSGSSVQKGVNSQKGK 240
Query: 241 CVRNGDRFQVLIGYNAELIAVFKTLPSKNYDPDTKTWNFSMNDYSALMKAAQSLPTVNLQ 300
CVRNGDRFQVLIGYNAELIAVFKTLPSKNYDPDTKTWNFSMNDYSALMKAAQSLPTVNLQ
Sbjct: 241 CVRNGDRFQVLIGYNAELIAVFKTLPSKNYDPDTKTWNFSMNDYSALMKAAQSLPTVNLQ 300
Query: 301 PLEWAYGSSESPSTSSEGQAGLPSAPSLSFVKGRCMLISRAYFEADISYSQDLIALFKQM 360
PLEWAYGSSESPSTSSEGQAGLPSAPSLSFVKGRCMLISRAYFEADISYSQDLIALFKQM
Sbjct: 301 PLEWAYGSSESPSTSSEGQAGLPSAPSLSFVKGRCMLISRAYFEADISYSQDLIALFKQM 360
Query: 361 DSRRYDVKTRKWSFLLEEHSKLIAKVRCLPQVQLDPLPTTLTLAFASQLKKTSLSLTPDV 420
DSRRYDVKTRKWSFLLEEHSKLIAKVRCLPQVQLDPLPTTLTLAFASQLKKTSLSLTPDV
Sbjct: 361 DSRRYDVKTRKWSFLLEEHSKLIAKVRCLPQVQLDPLPTTLTLAFASQLKKTSLSLTPDV 420
Query: 421 PEADLSEVDPKLVSNLMPFQRAGVNFAIAKGGRLLLADDMGLGKTIQAICIAAFYRKEWP 480
PEADLSEVDPKLVSNLMPFQRAGVNFAIAKGGRLLLADDMGLGKTIQAICIAAFYRKEWP
Sbjct: 421 PEADLSEVDPKLVSNLMPFQRAGVNFAIAKGGRLLLADDMGLGKTIQAICIAAFYRKEWP 480
Query: 481 LLVVVPSSVRFTWEQAFLRWLPSLSPDCINVVVTGKDRLTAGLINIVSFDLLSKLEKQLK 540
LLVVVPSSVRFTWEQAFLRWLPSLSPDCINVVVTGKDRLTAGLINIVSFDLLSKLEKQLK
Sbjct: 481 LLVVVPSSVRFTWEQAFLRWLPSLSPDCINVVVTGKDRLTAGLINIVSFDLLSKLEKQLK 540
Query: 541 TPFKVVIIDESHFLKNSRTARCRAAMPVLKVAKRVILLSGTPAMSRPAELYTQIIAVKPT 600
TPFKVVIIDESHFLKNSRTARCRAAMPVLKVAKRVILLSGTPAMSRPAELYTQIIAVKPT
Sbjct: 541 TPFKVVIIDESHFLKNSRTARCRAAMPVLKVAKRVILLSGTPAMSRPAELYTQIIAVKPT 600
Query: 601 FFPQFHAFGLRYCDAKRMPWGWDYSGSSNLGELKLLLEEAVMLRRLKSDVLSQLPAKQRK 660
FFPQFHAFGLRYCDAKRMPWGWDYSGSSNLGELKLLLEEAVMLRRLKSDVLSQLPAKQRK
Sbjct: 601 FFPQFHAFGLRYCDAKRMPWGWDYSGSSNLGELKLLLEEAVMLRRLKSDVLSQLPAKQRK 660
Query: 661 IVVIAPGRINARTRAALDAAAKEMTTKDKTKQQQKDALILFFNRTAEAKIPSVIEYILDL 720
IVVIAPGRINARTRAALDAAAKEMTTKDKTKQQQKDALILFFNRTAEAKIPSVIEYILDL
Sbjct: 661 IVVIAPGRINARTRAALDAAAKEMTTKDKTKQQQKDALILFFNRTAEAKIPSVIEYILDL 720
Query: 721 LESGREKFLVFAHHKVVLDAITQELERKHVQHIRIDGSTSSAEREDLCQQFQLSERHAVA 780
LESGREKFLVFAHHKVVLDAITQELERKHVQHIRIDGSTSSAEREDLCQQFQLSERHAVA
Sbjct: 721 LESGREKFLVFAHHKVVLDAITQELERKHVQHIRIDGSTSSAEREDLCQQFQLSERHAVA 780
Query: 781 VLSITAANMGLTFSSADLVVFAELFWNPGVLIQAEDRVHRIGQTSSVGIHYLVAKGTADD 840
VLSITAANMGLTFSSADLVVFAELFWNPGVLIQAEDRVHRIGQTSSVGIHYLVAKGTADD
Sbjct: 781 VLSITAANMGLTFSSADLVVFAELFWNPGVLIQAEDRVHRIGQTSSVGIHYLVAKGTADD 840
Query: 841 YLWPLIQEKIKVLAEAGLSETNFSEMTESTDYLYKDPKQQKIYDLFQKSFEKEGSDMELL 900
YLWPLIQEKIKVLAEAGLSETNFSEMTESTDYLYKDPKQQKIYDLFQKSFEKEGSDMELL
Sbjct: 841 YLWPLIQEKIKVLAEAGLSETNFSEMTESTDYLYKDPKQQKIYDLFQKSFEKEGSDMELL 900
Query: 901 EAAESFDPGSASGTSGSSSQNMGDTLDESSLTASPQKKRRFEFFDNWDSFTSPL 954
EAAESFDPGSASGTSGSSSQNMGDTLDESSLTASPQKKRRFEFFDNWDSFTSPL
Sbjct: 901 EAAESFDPGSASGTSGSSSQNMGDTLDESSLTASPQKKRRFEFFDNWDSFTSPL 954
>gi|187761314 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a-like 1 [Homo sapiens]
Length = 954
Score = 1884 bits (4880), Expect = 0.0
Identities = 954/954 (100%), Positives = 954/954 (100%)
Query: 1 MSLPLTEEQRKKIEENRQKALARRAEKLLAEQHQRTSSGTSIAGNPFQAKQGPSQNFPRE 60
MSLPLTEEQRKKIEENRQKALARRAEKLLAEQHQRTSSGTSIAGNPFQAKQGPSQNFPRE
Sbjct: 1 MSLPLTEEQRKKIEENRQKALARRAEKLLAEQHQRTSSGTSIAGNPFQAKQGPSQNFPRE 60
Query: 61 SCKPVSHGVIFKQQNLSSSSNADQRPHDSHSFQAKGIWKKPEEMPTACPGHSPRSQMALT 120
SCKPVSHGVIFKQQNLSSSSNADQRPHDSHSFQAKGIWKKPEEMPTACPGHSPRSQMALT
Sbjct: 61 SCKPVSHGVIFKQQNLSSSSNADQRPHDSHSFQAKGIWKKPEEMPTACPGHSPRSQMALT 120
Query: 121 GISPPLAQSPPEVPKQQLLSYELGQGHAQASPEIRFTPFANPTHKPLAKPKSSQETPAHS 180
GISPPLAQSPPEVPKQQLLSYELGQGHAQASPEIRFTPFANPTHKPLAKPKSSQETPAHS
Sbjct: 121 GISPPLAQSPPEVPKQQLLSYELGQGHAQASPEIRFTPFANPTHKPLAKPKSSQETPAHS 180
Query: 181 SGQPPRDAKLEAKTAKASPSGQNISYIHSSSESVTPRTEGRLQQKSGSSVQKGVNSQKGK 240
SGQPPRDAKLEAKTAKASPSGQNISYIHSSSESVTPRTEGRLQQKSGSSVQKGVNSQKGK
Sbjct: 181 SGQPPRDAKLEAKTAKASPSGQNISYIHSSSESVTPRTEGRLQQKSGSSVQKGVNSQKGK 240
Query: 241 CVRNGDRFQVLIGYNAELIAVFKTLPSKNYDPDTKTWNFSMNDYSALMKAAQSLPTVNLQ 300
CVRNGDRFQVLIGYNAELIAVFKTLPSKNYDPDTKTWNFSMNDYSALMKAAQSLPTVNLQ
Sbjct: 241 CVRNGDRFQVLIGYNAELIAVFKTLPSKNYDPDTKTWNFSMNDYSALMKAAQSLPTVNLQ 300
Query: 301 PLEWAYGSSESPSTSSEGQAGLPSAPSLSFVKGRCMLISRAYFEADISYSQDLIALFKQM 360
PLEWAYGSSESPSTSSEGQAGLPSAPSLSFVKGRCMLISRAYFEADISYSQDLIALFKQM
Sbjct: 301 PLEWAYGSSESPSTSSEGQAGLPSAPSLSFVKGRCMLISRAYFEADISYSQDLIALFKQM 360
Query: 361 DSRRYDVKTRKWSFLLEEHSKLIAKVRCLPQVQLDPLPTTLTLAFASQLKKTSLSLTPDV 420
DSRRYDVKTRKWSFLLEEHSKLIAKVRCLPQVQLDPLPTTLTLAFASQLKKTSLSLTPDV
Sbjct: 361 DSRRYDVKTRKWSFLLEEHSKLIAKVRCLPQVQLDPLPTTLTLAFASQLKKTSLSLTPDV 420
Query: 421 PEADLSEVDPKLVSNLMPFQRAGVNFAIAKGGRLLLADDMGLGKTIQAICIAAFYRKEWP 480
PEADLSEVDPKLVSNLMPFQRAGVNFAIAKGGRLLLADDMGLGKTIQAICIAAFYRKEWP
Sbjct: 421 PEADLSEVDPKLVSNLMPFQRAGVNFAIAKGGRLLLADDMGLGKTIQAICIAAFYRKEWP 480
Query: 481 LLVVVPSSVRFTWEQAFLRWLPSLSPDCINVVVTGKDRLTAGLINIVSFDLLSKLEKQLK 540
LLVVVPSSVRFTWEQAFLRWLPSLSPDCINVVVTGKDRLTAGLINIVSFDLLSKLEKQLK
Sbjct: 481 LLVVVPSSVRFTWEQAFLRWLPSLSPDCINVVVTGKDRLTAGLINIVSFDLLSKLEKQLK 540
Query: 541 TPFKVVIIDESHFLKNSRTARCRAAMPVLKVAKRVILLSGTPAMSRPAELYTQIIAVKPT 600
TPFKVVIIDESHFLKNSRTARCRAAMPVLKVAKRVILLSGTPAMSRPAELYTQIIAVKPT
Sbjct: 541 TPFKVVIIDESHFLKNSRTARCRAAMPVLKVAKRVILLSGTPAMSRPAELYTQIIAVKPT 600
Query: 601 FFPQFHAFGLRYCDAKRMPWGWDYSGSSNLGELKLLLEEAVMLRRLKSDVLSQLPAKQRK 660
FFPQFHAFGLRYCDAKRMPWGWDYSGSSNLGELKLLLEEAVMLRRLKSDVLSQLPAKQRK
Sbjct: 601 FFPQFHAFGLRYCDAKRMPWGWDYSGSSNLGELKLLLEEAVMLRRLKSDVLSQLPAKQRK 660
Query: 661 IVVIAPGRINARTRAALDAAAKEMTTKDKTKQQQKDALILFFNRTAEAKIPSVIEYILDL 720
IVVIAPGRINARTRAALDAAAKEMTTKDKTKQQQKDALILFFNRTAEAKIPSVIEYILDL
Sbjct: 661 IVVIAPGRINARTRAALDAAAKEMTTKDKTKQQQKDALILFFNRTAEAKIPSVIEYILDL 720
Query: 721 LESGREKFLVFAHHKVVLDAITQELERKHVQHIRIDGSTSSAEREDLCQQFQLSERHAVA 780
LESGREKFLVFAHHKVVLDAITQELERKHVQHIRIDGSTSSAEREDLCQQFQLSERHAVA
Sbjct: 721 LESGREKFLVFAHHKVVLDAITQELERKHVQHIRIDGSTSSAEREDLCQQFQLSERHAVA 780
Query: 781 VLSITAANMGLTFSSADLVVFAELFWNPGVLIQAEDRVHRIGQTSSVGIHYLVAKGTADD 840
VLSITAANMGLTFSSADLVVFAELFWNPGVLIQAEDRVHRIGQTSSVGIHYLVAKGTADD
Sbjct: 781 VLSITAANMGLTFSSADLVVFAELFWNPGVLIQAEDRVHRIGQTSSVGIHYLVAKGTADD 840
Query: 841 YLWPLIQEKIKVLAEAGLSETNFSEMTESTDYLYKDPKQQKIYDLFQKSFEKEGSDMELL 900
YLWPLIQEKIKVLAEAGLSETNFSEMTESTDYLYKDPKQQKIYDLFQKSFEKEGSDMELL
Sbjct: 841 YLWPLIQEKIKVLAEAGLSETNFSEMTESTDYLYKDPKQQKIYDLFQKSFEKEGSDMELL 900
Query: 901 EAAESFDPGSASGTSGSSSQNMGDTLDESSLTASPQKKRRFEFFDNWDSFTSPL 954
EAAESFDPGSASGTSGSSSQNMGDTLDESSLTASPQKKRRFEFFDNWDSFTSPL
Sbjct: 901 EAAESFDPGSASGTSGSSSQNMGDTLDESSLTASPQKKRRFEFFDNWDSFTSPL 954
>gi|62860046 zinc finger, RAN-binding domain containing 3 [Homo
sapiens]
Length = 1079
Score = 351 bits (900), Expect = 2e-96
Identities = 202/457 (44%), Positives = 285/457 (62%), Gaps = 20/457 (4%)
Query: 415 SLTPDVP----EAD--LSEVDPKLVSNLMPFQRAGVNFAIAKGGRLLLADDMGLGKTIQA 468
SLTP + E+D L + +L + L+PFQ+ G+ FA+ + GR ++AD+MGLGKTIQA
Sbjct: 10 SLTPHISCVTNESDNLLDFLPDRLRAKLLPFQKDGIIFALKRNGRCMVADEMGLGKTIQA 69
Query: 469 ICIAAFYRKEWPLLVVVPSSVRFTWEQAFLRWLPSLSPDCINVVVTGKD--RLTAGLINI 526
I I FY++EWPLL+VVPSS+R+ W + +W+P LSP+ INV+ D R++ + +
Sbjct: 70 IGITYFYKEEWPLLIVVPSSLRYPWTEEIEKWIPELSPEEINVIQNKTDVRRMSTSKVTV 129
Query: 527 VSFDLLSKLEKQL-----KTPFKVVIIDESHFLKNSRTARCRAAMPVLKVAKRVILLSGT 581
+ + LL+ K L FKVVI+DESH++K+ R R +P+++ A+R ILL+GT
Sbjct: 130 LGYGLLTADAKTLIDALNNQNFKVVIVDESHYMKSRNATRSRILLPIVQKARRAILLTGT 189
Query: 582 PAMSRPAELYTQIIAVKPTFFPQFHAFGLRYCDAKRMPWG----WDYSGSSNLGELKLLL 637
PA+ RP EL+ QI A+ P F ++ + RYC+A +G WD G+SNL EL LL
Sbjct: 190 PALGRPEELFMQIEALFPQKFGRWTDYAKRYCNAHIRYFGKRPQWDCRGASNLNELHQLL 249
Query: 638 EEAVMLRRLKSDVLSQLPAKQR-KIVVIAPGRINARTRAALDAAAKEMTTKDKTKQQQKD 696
+ +M+RRLK++VL+QLP K R +I P + + K M T + +
Sbjct: 250 SD-IMIRRLKTEVLTQLPPKVRQRIPFDLPSAAAKELNTSFEEWEKIMRTPNSGAMETVM 308
Query: 697 ALIL-FFNRTAEAKIPSVIEYILDLLESGREKFLVFAHHKVVLDAITQELERKHVQHIRI 755
LI F +TA AK +V +YI +L++ KFLVFAHH +L A T+ + ++IRI
Sbjct: 309 GLITRMFKQTAIAKAGAVKDYIKMMLQNDSLKFLVFAHHLSMLQACTEAVIENKTRYIRI 368
Query: 756 DGSTSSAEREDLCQQFQLSERHAVAVLSITAANMGLTFSSADLVVFAELFWNPGVLIQAE 815
DGS SS+ER L QFQ VA+LSI AA GLTF++A VVFAEL+W+PG + QAE
Sbjct: 369 DGSVSSSERIHLVNQFQKDPDTRVAILSIQAAGQGLTFTAASHVVFAELYWDPGHIKQAE 428
Query: 816 DRVHRIGQTSSVGIHYLVAKGTADDYLWPLIQEKIKV 852
DR HRIGQ SSV IHYL+A GT D +W ++ K +V
Sbjct: 429 DRAHRIGQCSSVNIHYLIANGTLDTLMWGMLNRKAQV 465
>gi|27477070 BTAF1 RNA polymerase II, B-TFIID transcription
factor-associated, 170kDa [Homo sapiens]
Length = 1849
Score = 138 bits (347), Expect = 3e-32
Identities = 163/591 (27%), Positives = 256/591 (43%), Gaps = 118/591 (19%)
Query: 434 SNLMPFQRAGVNF-AIAKGGRL--LLADDMGLGKTIQAICIAA---------FYRKEW-- 479
+ L +Q+ GVN+ A +L +L DDMGLGKT+Q+ICI A + R +
Sbjct: 1264 AELRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSICILAGDHCHRAQEYARSKLAE 1323
Query: 480 ----PLLVVVPSSVRFTWEQAFLRWLPS--LSPDCINVVVTGKDRLTAGL----INIVSF 529
P LVV P ++ W ++ L+P T + RL + + + S+
Sbjct: 1324 CMPLPSLVVCPPTLTGHWVDEVGKFCSREYLNPLHYTGPPTERIRLQHQVKRHNLIVASY 1383
Query: 530 DLL-SKLEKQLKTPFKVVIIDESHFLKNSRTARCRAAMPVLKVAKRVILLSGTPAMSRPA 588
D++ + ++ F I+DE H +KN +T +A + A I+LSGTP +
Sbjct: 1384 DVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAVKQL--TANYRIILSGTPIQNNVL 1441
Query: 589 ELYTQIIAVKPTFFPQFHAFGLRYCDAKRMPWGWDYSGSSNLGELKLLLEEAV------- 641
EL++ + P F F RY K + D SS E +L +A+
Sbjct: 1442 ELWSLFDFLMPGFLGTERQFAARY--GKPILASRDARSSSREQEAGVLAMDALHRQVLPF 1499
Query: 642 MLRRLKSDVLSQLPAK--QRKIVVIAPGRIN-----ARTRAALD-------AAAKEMTTK 687
+LRR+K DVL LP K Q ++P ++ A++RA D A E T K
Sbjct: 1500 LLRRMKEDVLQDLPPKIIQDYYCTLSPLQVQLYEDFAKSRAKCDVDETVSSATLSEETEK 1559
Query: 688 DKTKQQ--------------QKDALILF-----FNRTAEA---------------KIPSV 713
K K AL+L F TAE K+ ++
Sbjct: 1560 PKLKATGHVFQALQYLRKLCNHPALVLTPQHPEFKTTAEKLAVQNSSLHDIQHAPKLSAL 1619
Query: 714 IEYILDL-------LESGRE------KFLVFAHHKVVLDAITQELERKH---VQHIRIDG 757
+ +LD ESG E + L+F K +LD + +L + H V ++R+DG
Sbjct: 1620 KQLLLDCGLGNGSTSESGTESVVAQHRILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDG 1679
Query: 758 STSSAEREDLCQQFQLSERHAVAVLSITAANMGLTFSSADLVVFAELFWNPGVLIQAEDR 817
S +R + +F V +L+ +GL + AD VVF E WNP +QA DR
Sbjct: 1680 SIPPGQRHSIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDR 1739
Query: 818 VHRIGQTSSVGIHYLVAKGTADDYLWPLIQEKIKVLAEAGLSETNFSEMTESTDYLYKDP 877
HRIGQ V ++ L+ +GT ++ + L + K+ + A +S+ N S + TD
Sbjct: 1740 AHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMNI-ANTVISQENSSLQSMGTD------ 1792
Query: 878 KQQKIYDLFQKSFEKEGSDMELLEAAESFDPGSASGTSGSSSQNMGDTLDE 928
++ DLF + +K+G E A++ G AS S +N+ D D+
Sbjct: 1793 ---QLLDLF--TLDKDGK----AEKADTSTSGKAS--MKSILENLSDLWDQ 1832
>gi|21071058 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a5 [Homo sapiens]
Length = 1052
Score = 131 bits (329), Expect = 3e-30
Identities = 125/484 (25%), Positives = 226/484 (46%), Gaps = 71/484 (14%)
Query: 436 LMPFQRAGVNFAIA---KGGRLLLADDMGLGKTIQAICIAAF---YRK-EWPLLVVVPSS 488
L +Q G+N+ I+ G +LAD+MGLGKT+Q I + + YR P +V+VP S
Sbjct: 180 LRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKS 239
Query: 489 VRFTWEQAFLRWLPSLSPDCINVVVTGKDRLTAGL----------INIVSFDLLSKLEKQ 538
W F RW+P+L C+ + K++ A + + + S+++L K EK
Sbjct: 240 TLHNWMSEFKRWVPTLRSVCL---IGDKEQRAAFVRDVLLPGEWDVCVTSYEMLIK-EKS 295
Query: 539 L--KTPFKVVIIDESHFLKNSRTARCRAAMPVLKVAKRVILLSGTPAMSRPAELYTQIIA 596
+ K ++ ++IDE+H +KN + ++ + K R +LL+GTP + EL++ +
Sbjct: 296 VFKKFNWRYLVIDEAHRIKNEK-SKLSEIVREFKTTNR-LLLTGTPLQNNLHELWSLLNF 353
Query: 597 VKPTFFPQFHAFGLRYCDAKRMPWGWDYSGSSNLGELKL-----LLEEAVMLRRLKSDVL 651
+ P F F W + ++ LG+ KL ++ +LRR+K+DV
Sbjct: 354 LLPDVFNSADDFD-----------SW-FDTNNCLGDQKLVERLHMVLRPFLLRRIKADVE 401
Query: 652 SQLPAKQRKIVVIAPG--------RINARTRAALDAAAK--EMTTKDKTKQQQKDALILF 701
LP K+ + + RI + L++A K +M + Q +K +
Sbjct: 402 KSLPPKKEVKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPY 461
Query: 702 FNRTAEAKIP--------------SVIEYILDLLESGREKFLVFAHHKVVLDAITQELER 747
AE P V++ +L L+ + L+F+ VLD +
Sbjct: 462 LFDGAEPGPPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMW 521
Query: 748 KHVQHIRIDGSTSSAEREDLCQQF-QLSERHAVAVLSITAANMGLTFSSADLVVFAELFW 806
++ ++ R+DG T ER+D + + + V +LS A +G+ ++AD+V+ + W
Sbjct: 522 RNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDW 581
Query: 807 NPGVLIQAEDRVHRIGQTSSVGIHYLVAKGTADDYLWPLIQEKIK----VLAEAGLSETN 862
NP V +QA DR HRIGQT +V + + T ++ + + K++ V+ + L + N
Sbjct: 582 NPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGRLVDQN 641
Query: 863 FSEM 866
+++
Sbjct: 642 LNKI 645
>gi|164419749 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a1 isoform b [Homo sapiens]
Length = 1042
Score = 130 bits (328), Expect = 4e-30
Identities = 126/474 (26%), Positives = 213/474 (44%), Gaps = 63/474 (13%)
Query: 427 EVDPKLVSN--LMPFQRAGVNFAIA---KGGRLLLADDMGLGKTIQAICIAAF---YRK- 477
EV P V L +Q G+N+ I+ G +LAD+MGLGKT+Q I + + YR
Sbjct: 172 EVSPSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNI 231
Query: 478 EWPLLVVVPSSVRFTWEQAFLRWLPSLSPDCINVVVTGKDRLTAGL----------INIV 527
P +V+VP S W F RW+PSL C V KD A + + +
Sbjct: 232 PGPHMVLVPKSTLHNWMNEFKRWVPSLRVICF---VGDKDARAAFIRDEMMPGEWDVCVT 288
Query: 528 SFDLLSKLEKQL--KTPFKVVIIDESHFLKNSRTARCRAAMPVLKVAKRVILLSGTPAMS 585
S++++ K EK + K ++ ++IDE+H +KN + ++ + K R +LL+GTP +
Sbjct: 289 SYEMVIK-EKSVFKKFHWRYLVIDEAHRIKNEK-SKLSEIVREFKSTNR-LLLTGTPLQN 345
Query: 586 RPAELYTQIIAVKPTFFPQFHAFGLRYCDAKRMPWGWDYSGSSNLGELKLLLEEAVMLRR 645
EL+ + + P F F + D K + G L E + + +LRR
Sbjct: 346 NLHELWALLNFLLPDVFNSADDFD-SWFDTK------NCLGDQKLVERLHAVLKPFLLRR 398
Query: 646 LKSDVLSQLPAKQRKIVVIAPGRINARTRAALDAAAKEMTTKDKTKQQQKDALILFFNR- 704
+K+DV LP K K + I G + K++ + + + K L+ +
Sbjct: 399 IKTDVEKSLPPK--KEIKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQL 456
Query: 705 -------------------TAEAKIPS------VIEYILDLLESGREKFLVFAHHKVVLD 739
T + I S V++ +L L+ + L+F+ +LD
Sbjct: 457 RKCCNHPYLFDGAEPGPPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLD 516
Query: 740 AITQELERKHVQHIRIDGSTSSAEREDLCQQFQL-SERHAVAVLSITAANMGLTFSSADL 798
+ + ++ R+DG T ERE+ + F + + +LS A +G+ +SAD+
Sbjct: 517 ILEDYCMWRGYEYCRLDGQTPHEEREEAIEAFNAPNSSKFIFMLSTRAGGLGINLASADV 576
Query: 799 VVFAELFWNPGVLIQAEDRVHRIGQTSSVGIHYLVAKGTADDYLWPLIQEKIKV 852
V+ + WNP V +QA DR HRIGQ V + L+ T ++ + + K+++
Sbjct: 577 VILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRL 630
>gi|148612870 chromodomain helicase DNA binding protein 1-like [Homo
sapiens]
Length = 897
Score = 128 bits (321), Expect = 3e-29
Identities = 123/460 (26%), Positives = 210/460 (45%), Gaps = 57/460 (12%)
Query: 435 NLMPFQRAGVNFAIAK---GGRLLLADDMGLGKTIQAICI----AAFYRKEWPLLVVVPS 487
+L +Q GVN+ + +L D+MGLGKT Q I + A E P L++ P
Sbjct: 45 HLRSYQLEGVNWLAQRFHCQNGCILGDEMGLGKTCQTIALFIYLAGRLNDEGPFLILCPL 104
Query: 488 SVRFTWEQAFLRWLPSLSPDCINVVVTGKDR--LTAGL-------INIVSFDLLSKLEKQ 538
SV W++ R+ P LS C+ ++R L L + + ++++ K
Sbjct: 105 SVLSNWKEEMQRFAPGLS--CVTYAGDKEERACLQQDLKQESRFHVLLTTYEICLKDASF 162
Query: 539 LKT-PFKVVIIDESHFLKNSRTARCRAAMPVLKVAKRVILLSGTPAMSRPAELYTQIIAV 597
LK+ P+ V+++DE+H LKN + + V +LL+GTP + ELY+ + V
Sbjct: 163 LKSFPWSVLVVDEAHRLKNQSSLLHKTLSEFSVVFS--LLLTGTPIQNSLQELYSLLSFV 220
Query: 598 KPTFFPQFHA--FGLRYCDAKRMPWGWDYSGSSNLGELKLLLEEAVMLRRLKSDVLSQLP 655
+P F + F RY D ++ S + EL LL + +LRR+K++V ++LP
Sbjct: 221 EPDLFSKEEVGDFIQRYQDIEK--------ESESASELHKLL-QPFLLRRVKAEVATELP 271
Query: 656 AKQRKIVVIAPGRINARTRAAL---DAAAKEMTTKDKTKQQQ--------KDALILFFN- 703
K ++ + + A+ D A E T K K Q D LF
Sbjct: 272 KKTEVVIYHGMSALQKKYYKAILMKDLDAFENETAKKVKLQNILSQLRKCVDHPYLFDGV 331
Query: 704 -----------RTAEAKIPSVIEYILDLLESGREKFLVFAHHKVVLDAITQELERKHVQH 752
A K+ +++ +L L SG + L+F+ +LD + ++ + +
Sbjct: 332 EPEPFEVGDHLTEASGKL-HLLDKLLAFLYSGGHRVLLFSQMTQMLDILQDYMDYRGYSY 390
Query: 753 IRIDGSTSSAEREDLCQQFQLSERHAVAVLSITAANMGLTFSSADLVVFAELFWNPGVLI 812
R+DGS ER + F + V +LS A +G+ ++AD V+F + +NP +
Sbjct: 391 ERVDGSVRGEERHLAIKNFG-QQPIFVFLLSTRAGGVGMNLTAADTVIFVDSDFNPQNDL 449
Query: 813 QAEDRVHRIGQTSSVGIHYLVAKGTADDYLWPLIQEKIKV 852
QA R HRIGQ SV + L+ + T ++ ++ K+++
Sbjct: 450 QAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASKLQL 489
>gi|21071044 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a1 isoform a [Homo sapiens]
Length = 1054
Score = 128 bits (321), Expect = 3e-29
Identities = 129/486 (26%), Positives = 216/486 (44%), Gaps = 75/486 (15%)
Query: 427 EVDPKLVSN--LMPFQRAGVNFAIA---KGGRLLLADDMGLGKTIQAICIAAF---YRK- 477
EV P V L +Q G+N+ I+ G +LAD+MGLGKT+Q I + + YR
Sbjct: 172 EVSPSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNI 231
Query: 478 EWPLLVVVPSSVRFTWEQAFLRWLPSLSPDCINVVVTGKDRLTAGL----------INIV 527
P +V+VP S W F RW+PSL C V KD A + + +
Sbjct: 232 PGPHMVLVPKSTLHNWMNEFKRWVPSLRVICF---VGDKDARAAFIRDEMMPGEWDVCVT 288
Query: 528 SFDLLSKLEKQL--KTPFKVVIIDESHFLKNSRTARCRAAMPVLKVAKRVILLSGTPAMS 585
S++++ K EK + K ++ ++IDE+H +KN + ++ + K R +LL+GTP +
Sbjct: 289 SYEMVIK-EKSVFKKFHWRYLVIDEAHRIKNEK-SKLSEIVREFKSTNR-LLLTGTPLQN 345
Query: 586 RPAELYTQIIAVKPTFFPQFHAFGLRYCDAKRMPWGWDYSGSSNLGELKLLLEEAVMLRR 645
EL+ + + P F F + D K + G L E + + +LRR
Sbjct: 346 NLHELWALLNFLLPDVFNSADDFD-SWFDTK------NCLGDQKLVERLHAVLKPFLLRR 398
Query: 646 LKSDVLSQLPAKQRKIVVIAPGRINARTRAALDAAAKEMTTKDKTKQQQKDALILFFNR- 704
+K+DV LP K K + I G + K++ + + + K L+ +
Sbjct: 399 IKTDVEKSLPPK--KEIKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQL 456
Query: 705 -------------------TAEAKIPS------VIEYILDLLESGREKFLVFAHHKVVLD 739
T + I S V++ +L L+ + L+F+ +LD
Sbjct: 457 RKCCNHPYLFDGAEPGPPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLD 516
Query: 740 AITQELERKHVQHIRIDGSTSSAEREDLCQQFQ-LSERHAVA------------VLSITA 786
+ + ++ R+DG T ERED + + L +R A+ +LS A
Sbjct: 517 ILEDYCMWRGYEYCRLDGQTPHEEREDKFLEVEFLGQREAIEAFNAPNSSKFIFMLSTRA 576
Query: 787 ANMGLTFSSADLVVFAELFWNPGVLIQAEDRVHRIGQTSSVGIHYLVAKGTADDYLWPLI 846
+G+ +SAD+V+ + WNP V +QA DR HRIGQ V + L+ T ++ +
Sbjct: 577 GGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERA 636
Query: 847 QEKIKV 852
+ K+++
Sbjct: 637 EIKLRL 642
>gi|118421089 chromodomain helicase DNA binding protein 2 isoform 1
[Homo sapiens]
Length = 1828
Score = 122 bits (306), Expect = 2e-27
Identities = 117/472 (24%), Positives = 206/472 (43%), Gaps = 79/472 (16%)
Query: 436 LMPFQRAGVNFAI---AKGGRLLLADDMGLGKTIQAICIAAF----YRKEWPLLVVVPSS 488
L +Q G+N+ K ++LAD+MGLGKTIQ I ++ ++ P L+VVP S
Sbjct: 484 LRDYQLEGLNWLAHSWCKNNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFLIVVPLS 543
Query: 489 VRFTWEQAFLRWLPSLSPDCINVVVTGKDRLTAGLINIVSFDLLSKLEKQLK-----TPF 543
+W++ F W P INVVV D ++ I ++ + K+LK T +
Sbjct: 544 TLTSWQREFEIWAPE-----INVVVYIGDLMSRNTIR--EYEWIHSQTKRLKFNALITTY 596
Query: 544 KVVI---------------IDESHFLKNSRTARCRAAMPVLKVAKRVILLSGTPAMSRPA 588
++++ +DE+H LKN + + + + +L++GTP +
Sbjct: 597 EILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFK--SNHRLLITGTPLQNSLK 654
Query: 589 ELYTQIIAVKPTFFPQFHAFGLRYCDAKRMPWGWDYSGSSNLGELKLLLEEAVMLRRLKS 648
EL++ + + P F + F + + +G +L ++ E +LRR+K
Sbjct: 655 ELWSLLHFIMPEKFEFWEDFEEDHGKGRE-------NGYQSLHKVL----EPFLLRRVKK 703
Query: 649 DVLSQLPAKQRKIVVIAPGRIN--------ARTRAALDAAAKEMTT-------------- 686
DV LPAK +I+ + + R AL + T+
Sbjct: 704 DVEKSLPAKVEQILRVEMSALQKQYYKWILTRNYKALAKGTRGSTSGFLNIVMELKKCCN 763
Query: 687 -------KDKTKQQQKDALILFFNRTAEAKIPSVIEYILDLLESGREKFLVFAHHKVVLD 739
++ +++ ++L R++ I +++ +L L + L+F+ +LD
Sbjct: 764 HCYLIKPPEENERENGQEILLSLIRSSGKLI--LLDKLLTRLRERGNRVLIFSQMVRMLD 821
Query: 740 AITQELERKHVQHIRIDGSTSSAEREDLCQQFQLSERHAVA-VLSITAANMGLTFSSADL 798
+ + L KH R+DGS R+ F +LS A +G+ +SAD
Sbjct: 822 ILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADT 881
Query: 799 VVFAELFWNPGVLIQAEDRVHRIGQTSSVGIHYLVAKGTADDYLWPLIQEKI 850
VV + WNP +QA+ R HRIGQ V I+ LV KGT ++ + ++K+
Sbjct: 882 VVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKM 933
>gi|51599156 chromodomain helicase DNA binding protein 4 [Homo
sapiens]
Length = 1912
Score = 121 bits (304), Expect = 3e-27
Identities = 148/602 (24%), Positives = 254/602 (42%), Gaps = 98/602 (16%)
Query: 408 QLKKTSLSLTPDVPEADLS---EVDPKLVS----NLMPFQRAGVN---FAIAKGGRLLLA 457
++K L P+ P D + E P+ + L P+Q G+N F+ A+G +LA
Sbjct: 691 KVKLRKLERPPETPTVDPTVKYERQPEYLDATGGTLHPYQMEGLNWLRFSWAQGTDTILA 750
Query: 458 DDMGLGKTIQ-AICIAAFYRK---EWPLLVVVPSSVRFTWEQAFLRWLPSLSPDCINVVV 513
D+MGLGKT+Q A+ + + Y++ + P LV P S WE+ F W P + + V
Sbjct: 751 DEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTIINWEREFEMWAPDM---YVVTYV 807
Query: 514 TGKDRLTAGLINIVSFD--------LLSKLEKQLKTPFKV-------------------- 545
KD N SF+ S+++K+ F V
Sbjct: 808 GDKDSRAIIRENEFSFEDNAIRGGKKASRMKKEASVKFHVLLTSYELITIDMAILGSIDW 867
Query: 546 --VIIDESHFLKNSRTARCRAAMPVLKVAKRVILLSGTPAMSRPAELYTQIIAVKPTFFP 603
+I+DE+H LKN+++ R K +LL+GTP + EL+ + + P F
Sbjct: 868 ACLIVDEAHRLKNNQSKFFRVLNGYSLQHK--LLLTGTPLQNNLEELFHLLNFLTPERFH 925
Query: 604 QFHAFGLRYCDAKRMPWGWDYSGSSNLGELKLLLEEAVMLRRLKSDVLSQLPAKQRKI-- 661
F + D + + +L +L MLRRLK+DV +P+K I
Sbjct: 926 NLEGFLEEFADIAK---------EDQIKKLHDMLGPH-MLRRLKADVFKNMPSKTELIVR 975
Query: 662 VVIAPGR------INARTRAALDA--AAKEMTTKDKTKQQQK--DALILFFNRTAEA-KI 710
V ++P + I R AL+A +++ + +K + LF EA K+
Sbjct: 976 VELSPMQKKYYKYILTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKM 1035
Query: 711 PS----------------VIEYILDLLESGREKFLVFAHHKVVLDAITQELERKHVQHIR 754
P+ +++ +L L+ G + L+F+ +LD + LE + ++ R
Sbjct: 1036 PNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYER 1095
Query: 755 IDGSTSSAEREDLCQQFQL-SERHAVAVLSITAANMGLTFSSADLVVFAELFWNPGVLIQ 813
IDG + R++ +F + +LS A +G+ ++AD V+ + WNP IQ
Sbjct: 1096 IDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQ 1155
Query: 814 AEDRVHRIGQTSSVGIHYLVAKGTADDYLWPLIQEKI---KVLAEAGLSETNFSEMTEST 870
A R HRIGQ V I+ V + + ++ + + ++K+ ++ GL S +
Sbjct: 1156 AFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVVRPGLGSKTGSMSKQEL 1215
Query: 871 DYLYKDPKQQKIYDLFQK--SFEKEGSDMELL----EAAESFDPGSASGTSGSSSQNMGD 924
D + K ++ D KEG D ++ +A E + T + Q M +
Sbjct: 1216 DDILKFGTEELFKDEATDGGGDNKEGEDSSVIHYDDKAIERLLDRNQDETEDTELQGMNE 1275
Query: 925 TL 926
L
Sbjct: 1276 YL 1277
>gi|192807323 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform A [Homo sapiens]
Length = 1679
Score = 119 bits (297), Expect = 2e-26
Identities = 119/479 (24%), Positives = 201/479 (41%), Gaps = 84/479 (17%)
Query: 455 LLADDMGLGKTIQAICIAAFY----RKEWPLLVVVPSSVRFTWEQAFLRWLPSL------ 504
+LAD+MGLGKTIQ I + + R P L++VP S W F +W PS+
Sbjct: 776 ILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYK 835
Query: 505 -SPDCINVVVTGKDRLTAGLINIV--SFDLLSKLEKQL-KTPFKVVIIDESHFLKNSRTA 560
SP V +L +G N++ +++ + K + L K +K +I+DE H +KN
Sbjct: 836 GSPAARRAFV---PQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHH-C 891
Query: 561 RCRAAMPVLKVAKRVILLSGTPAMSRPAELYTQIIAVKPTFFPQFHAFGLRYCDAKRMPW 620
+ + VA R +LL+GTP ++ EL+ + + PT F F
Sbjct: 892 KLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFE----------- 940
Query: 621 GWDYSGSSNLGELKLLLEEAV--------------MLRRLKSDVLSQLPAKQRKIVV--- 663
W + + GE L EE +LRRLK +V +QLP K ++
Sbjct: 941 QWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDM 1000
Query: 664 -----IAPGRINARTRAALDAAAKEMTTKDKTKQQQKDALIL--------FFNRTAEAKI 710
+ + A+ D + K+ K TK + L F E+
Sbjct: 1001 SALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFS 1060
Query: 711 P---------------------SVIEYILDLLESGREKFLVFAHHKVVLDAITQELERKH 749
+++ IL L + K L+F ++ + +
Sbjct: 1061 EHLGFTGGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRG 1120
Query: 750 VQHIRIDGSTSSAEREDLCQQF-QLSERHAVAVLSITAANMGLTFSSADLVVFAELFWNP 808
+++R+DG+T + +R L + F + + + +LS A +GL SAD V+ + WNP
Sbjct: 1121 FKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNP 1180
Query: 809 GVLIQAEDRVHRIGQTSSVGIHYLVAKGTADDYLWPLIQEKIKV---LAEAGLSETNFS 864
+QA+DR HRIGQ + V + L + ++ + + K+ V + +AG+ + S
Sbjct: 1181 HQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSS 1239
>gi|192807320 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform F [Homo sapiens]
Length = 1613
Score = 119 bits (297), Expect = 2e-26
Identities = 119/479 (24%), Positives = 201/479 (41%), Gaps = 84/479 (17%)
Query: 455 LLADDMGLGKTIQAICIAAFY----RKEWPLLVVVPSSVRFTWEQAFLRWLPSL------ 504
+LAD+MGLGKTIQ I + + R P L++VP S W F +W PS+
Sbjct: 776 ILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYK 835
Query: 505 -SPDCINVVVTGKDRLTAGLINIV--SFDLLSKLEKQL-KTPFKVVIIDESHFLKNSRTA 560
SP V +L +G N++ +++ + K + L K +K +I+DE H +KN
Sbjct: 836 GSPAARRAFV---PQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHH-C 891
Query: 561 RCRAAMPVLKVAKRVILLSGTPAMSRPAELYTQIIAVKPTFFPQFHAFGLRYCDAKRMPW 620
+ + VA R +LL+GTP ++ EL+ + + PT F F
Sbjct: 892 KLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFE----------- 940
Query: 621 GWDYSGSSNLGELKLLLEEAV--------------MLRRLKSDVLSQLPAKQRKIVV--- 663
W + + GE L EE +LRRLK +V +QLP K ++
Sbjct: 941 QWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDM 1000
Query: 664 -----IAPGRINARTRAALDAAAKEMTTKDKTKQQQKDALIL--------FFNRTAEAKI 710
+ + A+ D + K+ K TK + L F E+
Sbjct: 1001 SALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFS 1060
Query: 711 P---------------------SVIEYILDLLESGREKFLVFAHHKVVLDAITQELERKH 749
+++ IL L + K L+F ++ + +
Sbjct: 1061 EHLGFTGGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRG 1120
Query: 750 VQHIRIDGSTSSAEREDLCQQF-QLSERHAVAVLSITAANMGLTFSSADLVVFAELFWNP 808
+++R+DG+T + +R L + F + + + +LS A +GL SAD V+ + WNP
Sbjct: 1121 FKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNP 1180
Query: 809 GVLIQAEDRVHRIGQTSSVGIHYLVAKGTADDYLWPLIQEKIKV---LAEAGLSETNFS 864
+QA+DR HRIGQ + V + L + ++ + + K+ V + +AG+ + S
Sbjct: 1181 HQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSS 1239
>gi|192807318 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform E [Homo sapiens]
Length = 1614
Score = 119 bits (297), Expect = 2e-26
Identities = 119/479 (24%), Positives = 201/479 (41%), Gaps = 84/479 (17%)
Query: 455 LLADDMGLGKTIQAICIAAFY----RKEWPLLVVVPSSVRFTWEQAFLRWLPSL------ 504
+LAD+MGLGKTIQ I + + R P L++VP S W F +W PS+
Sbjct: 776 ILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYK 835
Query: 505 -SPDCINVVVTGKDRLTAGLINIV--SFDLLSKLEKQL-KTPFKVVIIDESHFLKNSRTA 560
SP V +L +G N++ +++ + K + L K +K +I+DE H +KN
Sbjct: 836 GSPAARRAFV---PQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHH-C 891
Query: 561 RCRAAMPVLKVAKRVILLSGTPAMSRPAELYTQIIAVKPTFFPQFHAFGLRYCDAKRMPW 620
+ + VA R +LL+GTP ++ EL+ + + PT F F
Sbjct: 892 KLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFE----------- 940
Query: 621 GWDYSGSSNLGELKLLLEEAV--------------MLRRLKSDVLSQLPAKQRKIVV--- 663
W + + GE L EE +LRRLK +V +QLP K ++
Sbjct: 941 QWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDM 1000
Query: 664 -----IAPGRINARTRAALDAAAKEMTTKDKTKQQQKDALIL--------FFNRTAEAKI 710
+ + A+ D + K+ K TK + L F E+
Sbjct: 1001 SALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFS 1060
Query: 711 P---------------------SVIEYILDLLESGREKFLVFAHHKVVLDAITQELERKH 749
+++ IL L + K L+F ++ + +
Sbjct: 1061 EHLGFTGGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRG 1120
Query: 750 VQHIRIDGSTSSAEREDLCQQF-QLSERHAVAVLSITAANMGLTFSSADLVVFAELFWNP 808
+++R+DG+T + +R L + F + + + +LS A +GL SAD V+ + WNP
Sbjct: 1121 FKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNP 1180
Query: 809 GVLIQAEDRVHRIGQTSSVGIHYLVAKGTADDYLWPLIQEKIKV---LAEAGLSETNFS 864
+QA+DR HRIGQ + V + L + ++ + + K+ V + +AG+ + S
Sbjct: 1181 HQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSS 1239
>gi|192807316 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform D [Homo sapiens]
Length = 1616
Score = 119 bits (297), Expect = 2e-26
Identities = 119/479 (24%), Positives = 201/479 (41%), Gaps = 84/479 (17%)
Query: 455 LLADDMGLGKTIQAICIAAFY----RKEWPLLVVVPSSVRFTWEQAFLRWLPSL------ 504
+LAD+MGLGKTIQ I + + R P L++VP S W F +W PS+
Sbjct: 776 ILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYK 835
Query: 505 -SPDCINVVVTGKDRLTAGLINIV--SFDLLSKLEKQL-KTPFKVVIIDESHFLKNSRTA 560
SP V +L +G N++ +++ + K + L K +K +I+DE H +KN
Sbjct: 836 GSPAARRAFV---PQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHH-C 891
Query: 561 RCRAAMPVLKVAKRVILLSGTPAMSRPAELYTQIIAVKPTFFPQFHAFGLRYCDAKRMPW 620
+ + VA R +LL+GTP ++ EL+ + + PT F F
Sbjct: 892 KLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFE----------- 940
Query: 621 GWDYSGSSNLGELKLLLEEAV--------------MLRRLKSDVLSQLPAKQRKIVV--- 663
W + + GE L EE +LRRLK +V +QLP K ++
Sbjct: 941 QWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDM 1000
Query: 664 -----IAPGRINARTRAALDAAAKEMTTKDKTKQQQKDALIL--------FFNRTAEAKI 710
+ + A+ D + K+ K TK + L F E+
Sbjct: 1001 SALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFS 1060
Query: 711 P---------------------SVIEYILDLLESGREKFLVFAHHKVVLDAITQELERKH 749
+++ IL L + K L+F ++ + +
Sbjct: 1061 EHLGFTGGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRG 1120
Query: 750 VQHIRIDGSTSSAEREDLCQQF-QLSERHAVAVLSITAANMGLTFSSADLVVFAELFWNP 808
+++R+DG+T + +R L + F + + + +LS A +GL SAD V+ + WNP
Sbjct: 1121 FKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNP 1180
Query: 809 GVLIQAEDRVHRIGQTSSVGIHYLVAKGTADDYLWPLIQEKIKV---LAEAGLSETNFS 864
+QA+DR HRIGQ + V + L + ++ + + K+ V + +AG+ + S
Sbjct: 1181 HQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSS 1239
>gi|192807314 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform C [Homo sapiens]
Length = 1617
Score = 119 bits (297), Expect = 2e-26
Identities = 119/479 (24%), Positives = 201/479 (41%), Gaps = 84/479 (17%)
Query: 455 LLADDMGLGKTIQAICIAAFY----RKEWPLLVVVPSSVRFTWEQAFLRWLPSL------ 504
+LAD+MGLGKTIQ I + + R P L++VP S W F +W PS+
Sbjct: 776 ILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYK 835
Query: 505 -SPDCINVVVTGKDRLTAGLINIV--SFDLLSKLEKQL-KTPFKVVIIDESHFLKNSRTA 560
SP V +L +G N++ +++ + K + L K +K +I+DE H +KN
Sbjct: 836 GSPAARRAFV---PQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHH-C 891
Query: 561 RCRAAMPVLKVAKRVILLSGTPAMSRPAELYTQIIAVKPTFFPQFHAFGLRYCDAKRMPW 620
+ + VA R +LL+GTP ++ EL+ + + PT F F
Sbjct: 892 KLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFE----------- 940
Query: 621 GWDYSGSSNLGELKLLLEEAV--------------MLRRLKSDVLSQLPAKQRKIVV--- 663
W + + GE L EE +LRRLK +V +QLP K ++
Sbjct: 941 QWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDM 1000
Query: 664 -----IAPGRINARTRAALDAAAKEMTTKDKTKQQQKDALIL--------FFNRTAEAKI 710
+ + A+ D + K+ K TK + L F E+
Sbjct: 1001 SALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFS 1060
Query: 711 P---------------------SVIEYILDLLESGREKFLVFAHHKVVLDAITQELERKH 749
+++ IL L + K L+F ++ + +
Sbjct: 1061 EHLGFTGGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRG 1120
Query: 750 VQHIRIDGSTSSAEREDLCQQF-QLSERHAVAVLSITAANMGLTFSSADLVVFAELFWNP 808
+++R+DG+T + +R L + F + + + +LS A +GL SAD V+ + WNP
Sbjct: 1121 FKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNP 1180
Query: 809 GVLIQAEDRVHRIGQTSSVGIHYLVAKGTADDYLWPLIQEKIKV---LAEAGLSETNFS 864
+QA+DR HRIGQ + V + L + ++ + + K+ V + +AG+ + S
Sbjct: 1181 HQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSS 1239
>gi|192807312 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 119 bits (297), Expect = 2e-26
Identities = 119/479 (24%), Positives = 201/479 (41%), Gaps = 84/479 (17%)
Query: 455 LLADDMGLGKTIQAICIAAFY----RKEWPLLVVVPSSVRFTWEQAFLRWLPSL------ 504
+LAD+MGLGKTIQ I + + R P L++VP S W F +W PS+
Sbjct: 776 ILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYK 835
Query: 505 -SPDCINVVVTGKDRLTAGLINIV--SFDLLSKLEKQL-KTPFKVVIIDESHFLKNSRTA 560
SP V +L +G N++ +++ + K + L K +K +I+DE H +KN
Sbjct: 836 GSPAARRAFV---PQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHH-C 891
Query: 561 RCRAAMPVLKVAKRVILLSGTPAMSRPAELYTQIIAVKPTFFPQFHAFGLRYCDAKRMPW 620
+ + VA R +LL+GTP ++ EL+ + + PT F F
Sbjct: 892 KLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFE----------- 940
Query: 621 GWDYSGSSNLGELKLLLEEAV--------------MLRRLKSDVLSQLPAKQRKIVV--- 663
W + + GE L EE +LRRLK +V +QLP K ++
Sbjct: 941 QWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDM 1000
Query: 664 -----IAPGRINARTRAALDAAAKEMTTKDKTKQQQKDALIL--------FFNRTAEAKI 710
+ + A+ D + K+ K TK + L F E+
Sbjct: 1001 SALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFS 1060
Query: 711 P---------------------SVIEYILDLLESGREKFLVFAHHKVVLDAITQELERKH 749
+++ IL L + K L+F ++ + +
Sbjct: 1061 EHLGFTGGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRG 1120
Query: 750 VQHIRIDGSTSSAEREDLCQQF-QLSERHAVAVLSITAANMGLTFSSADLVVFAELFWNP 808
+++R+DG+T + +R L + F + + + +LS A +GL SAD V+ + WNP
Sbjct: 1121 FKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNP 1180
Query: 809 GVLIQAEDRVHRIGQTSSVGIHYLVAKGTADDYLWPLIQEKIKV---LAEAGLSETNFS 864
+QA+DR HRIGQ + V + L + ++ + + K+ V + +AG+ + S
Sbjct: 1181 HQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSS 1239
>gi|21071056 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 119 bits (297), Expect = 2e-26
Identities = 119/479 (24%), Positives = 201/479 (41%), Gaps = 84/479 (17%)
Query: 455 LLADDMGLGKTIQAICIAAFY----RKEWPLLVVVPSSVRFTWEQAFLRWLPSL------ 504
+LAD+MGLGKTIQ I + + R P L++VP S W F +W PS+
Sbjct: 776 ILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYK 835
Query: 505 -SPDCINVVVTGKDRLTAGLINIV--SFDLLSKLEKQL-KTPFKVVIIDESHFLKNSRTA 560
SP V +L +G N++ +++ + K + L K +K +I+DE H +KN
Sbjct: 836 GSPAARRAFV---PQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHH-C 891
Query: 561 RCRAAMPVLKVAKRVILLSGTPAMSRPAELYTQIIAVKPTFFPQFHAFGLRYCDAKRMPW 620
+ + VA R +LL+GTP ++ EL+ + + PT F F
Sbjct: 892 KLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFE----------- 940
Query: 621 GWDYSGSSNLGELKLLLEEAV--------------MLRRLKSDVLSQLPAKQRKIVV--- 663
W + + GE L EE +LRRLK +V +QLP K ++
Sbjct: 941 QWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDM 1000
Query: 664 -----IAPGRINARTRAALDAAAKEMTTKDKTKQQQKDALIL--------FFNRTAEAKI 710
+ + A+ D + K+ K TK + L F E+
Sbjct: 1001 SALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFS 1060
Query: 711 P---------------------SVIEYILDLLESGREKFLVFAHHKVVLDAITQELERKH 749
+++ IL L + K L+F ++ + +
Sbjct: 1061 EHLGFTGGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRG 1120
Query: 750 VQHIRIDGSTSSAEREDLCQQF-QLSERHAVAVLSITAANMGLTFSSADLVVFAELFWNP 808
+++R+DG+T + +R L + F + + + +LS A +GL SAD V+ + WNP
Sbjct: 1121 FKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNP 1180
Query: 809 GVLIQAEDRVHRIGQTSSVGIHYLVAKGTADDYLWPLIQEKIKV---LAEAGLSETNFS 864
+QA+DR HRIGQ + V + L + ++ + + K+ V + +AG+ + S
Sbjct: 1181 HQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSS 1239
>gi|48255900 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform a [Homo sapiens]
Length = 1590
Score = 119 bits (297), Expect = 2e-26
Identities = 120/479 (25%), Positives = 203/479 (42%), Gaps = 84/479 (17%)
Query: 455 LLADDMGLGKTIQAICIAAFY----RKEWPLLVVVPSSVRFTWEQAFLRWLPSL------ 504
+LAD+MGLGKTIQ I + + R P L++VP S W F +W PS+
Sbjct: 746 ILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYK 805
Query: 505 -SPDCINVVVTGKDRLTAGLINIV--SFDLLSKLEKQL-KTPFKVVIIDESHFLKNSRTA 560
+P +V +L +G N++ +++ + K + L K +K +I+DE H +KN
Sbjct: 806 GTPAMRRSLV---PQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHH-C 861
Query: 561 RCRAAMPVLKVAKRVILLSGTPAMSRPAELYTQIIAVKPTFFPQFHAFGLRYCDAKRMPW 620
+ + VA R ILL+GTP ++ EL+ + + PT F F
Sbjct: 862 KLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFE----------- 910
Query: 621 GWDYSGSSNLGELKLLLEEAV--------------MLRRLKSDVLSQLPAKQRKIV---- 662
W + + GE L EE +LRRLK +V SQLP K ++
Sbjct: 911 QWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDM 970
Query: 663 ----VIAPGRINARTRAALDAAAKEMTTKDKTKQQQKDALIL--------FFNRTAEAKI 710
I + A+ D + K+ K K + L F E+
Sbjct: 971 SALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFA 1030
Query: 711 P---------------------SVIEYILDLLESGREKFLVFAHHKVVLDAITQELERKH 749
+++ IL L + + L+F ++ + ++
Sbjct: 1031 EHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRN 1090
Query: 750 VQHIRIDGSTSSAEREDLCQQF-QLSERHAVAVLSITAANMGLTFSSADLVVFAELFWNP 808
++R+DG+T S +R L ++F + ++ + +LS A +GL +AD VV + WNP
Sbjct: 1091 FLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNP 1150
Query: 809 GVLIQAEDRVHRIGQTSSVGIHYLVAKGTADDYLWPLIQEKIKV---LAEAGLSETNFS 864
+QA+DR HRIGQ + V + L + ++ + + K+ V + +AG+ + S
Sbjct: 1151 HQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSS 1209
>gi|48255898 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform b [Homo sapiens]
Length = 1572
Score = 119 bits (297), Expect = 2e-26
Identities = 120/479 (25%), Positives = 203/479 (42%), Gaps = 84/479 (17%)
Query: 455 LLADDMGLGKTIQAICIAAFY----RKEWPLLVVVPSSVRFTWEQAFLRWLPSL------ 504
+LAD+MGLGKTIQ I + + R P L++VP S W F +W PS+
Sbjct: 746 ILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYK 805
Query: 505 -SPDCINVVVTGKDRLTAGLINIV--SFDLLSKLEKQL-KTPFKVVIIDESHFLKNSRTA 560
+P +V +L +G N++ +++ + K + L K +K +I+DE H +KN
Sbjct: 806 GTPAMRRSLV---PQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHH-C 861
Query: 561 RCRAAMPVLKVAKRVILLSGTPAMSRPAELYTQIIAVKPTFFPQFHAFGLRYCDAKRMPW 620
+ + VA R ILL+GTP ++ EL+ + + PT F F
Sbjct: 862 KLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFE----------- 910
Query: 621 GWDYSGSSNLGELKLLLEEAV--------------MLRRLKSDVLSQLPAKQRKIV---- 662
W + + GE L EE +LRRLK +V SQLP K ++
Sbjct: 911 QWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDM 970
Query: 663 ----VIAPGRINARTRAALDAAAKEMTTKDKTKQQQKDALIL--------FFNRTAEAKI 710
I + A+ D + K+ K K + L F E+
Sbjct: 971 SALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFA 1030
Query: 711 P---------------------SVIEYILDLLESGREKFLVFAHHKVVLDAITQELERKH 749
+++ IL L + + L+F ++ + ++
Sbjct: 1031 EHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRN 1090
Query: 750 VQHIRIDGSTSSAEREDLCQQF-QLSERHAVAVLSITAANMGLTFSSADLVVFAELFWNP 808
++R+DG+T S +R L ++F + ++ + +LS A +GL +AD VV + WNP
Sbjct: 1091 FLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNP 1150
Query: 809 GVLIQAEDRVHRIGQTSSVGIHYLVAKGTADDYLWPLIQEKIKV---LAEAGLSETNFS 864
+QA+DR HRIGQ + V + L + ++ + + K+ V + +AG+ + S
Sbjct: 1151 HQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSS 1209
>gi|190358534 SWI/SNF-related, matrix-associated actin-dependent
regulator of chromatin, subfamily a, containing DEAD/H
box 1 isoform b [Homo sapiens]
Length = 1026
Score = 118 bits (296), Expect = 2e-26
Identities = 134/515 (26%), Positives = 216/515 (41%), Gaps = 110/515 (21%)
Query: 435 NLMPFQRAGVNFAIA---KGGRLLLADDMGLGKTIQAICIAAFYRKE---WPLLVVVPSS 488
+L P+Q+ G+N+ G +LAD+MGLGKTIQAI A+ +E P L+VVP+S
Sbjct: 496 SLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGNNGPHLIVVPAS 555
Query: 489 VRFTWEQAFLRWLPSLSPDC----------INVVVTGKDRLTAGLINIVSFDLLSKLEKQ 538
W + W P+L C I + + ++ + + S ++
Sbjct: 556 TIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNCAISSSDDRS 615
Query: 539 LKTPFKV--VIIDESHFLKNSRTARCRAAMPVLKVAKRVILLSGTPAMSRPAELYTQIIA 596
L K+ I DE H LKN + R + M + A +LL+GTP + EL + +
Sbjct: 616 LFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTI--NANNRLLLTGTPVQNNLLELMSLLNF 673
Query: 597 VKPTFFPQFHAFGLRYCDAKRMPWGWDYSGSSNLGELKLLLE-----------EAVMLRR 645
V P H F + +RM +S + + + + E + +LRR
Sbjct: 674 VMP------HMFSSSTSEIRRM-----FSSKTKSADEQSIYEKERIAHAKQIIKPFILRR 722
Query: 646 LKSDVLSQLPAKQRKIVVIAPGR--------INARTRAALDAAAKEMTTKDKTKQQQKDA 697
+K +VL QLP K+ +I + A + R + +++ K + Q +K A
Sbjct: 723 VKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLEKNTEMCNVMMQLRKMA 782
Query: 698 LILFFNR---TAE---------AKIPSVIEYILDLLESGREKFLVFAHHKV--------- 736
+R TAE K P+ E DL+ E F H +
Sbjct: 783 NHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINN 842
Query: 737 ---------------VLDAITQELERK----------------------HVQH--IRIDG 757
VL I EL++K H QH +R+DG
Sbjct: 843 FQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDG 902
Query: 758 STSSAEREDLCQQFQLSERHAVAVLSITAANMGLTFSSADLVVFAELFWNPGVLIQAEDR 817
T +ER L +F V +LS A +G+ +SA++V+ ++ NP QAEDR
Sbjct: 903 KTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDR 962
Query: 818 VHRIGQTSSVGIHYLVAKGTADDYLWPLIQEKIKV 852
HR+GQT V + L+++GT ++ + + Q+K+K+
Sbjct: 963 CHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKL 997
>gi|190358536 SWI/SNF-related, matrix-associated actin-dependent
regulator of chromatin, subfamily a, containing DEAD/H
box 1 isoform a [Homo sapiens]
Length = 1028
Score = 117 bits (294), Expect = 4e-26
Identities = 135/517 (26%), Positives = 218/517 (42%), Gaps = 112/517 (21%)
Query: 435 NLMPFQRAGVNFAIA---KGGRLLLADDMGLGKTIQAICIAAFYRKE---WPLLVVVPSS 488
+L P+Q+ G+N+ G +LAD+MGLGKTIQAI A+ +E P L+VVP+S
Sbjct: 496 SLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGNNGPHLIVVPAS 555
Query: 489 VRFTWEQAFLRWLPSLSPDC----------INVVVTGKDRLTAGLINIVSFDLLSKLEKQ 538
W + W P+L C I + + ++ + + S ++
Sbjct: 556 TIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNCAISSSDDRS 615
Query: 539 LKTPFKV--VIIDESHFLKNSRTARCRAAMPVLKVAKRVILLSGTPAMSRPAELYTQIIA 596
L K+ I DE H LKN + R + M + A +LL+GTP + EL + +
Sbjct: 616 LFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTI--NANNRLLLTGTPVQNNLLELMSLLNF 673
Query: 597 VKPTFFPQFHAFGLRYCDAKRMPWGWDYSGSSNLGELKLLLE-----------EAVMLRR 645
V P H F + +RM +S + + + + E + +LRR
Sbjct: 674 VMP------HMFSSSTSEIRRM-----FSSKTKSADEQSIYEKERIAHAKQIIKPFILRR 722
Query: 646 LKSDVLSQLPAKQRKIVVIAPGR--------INARTRAALDAAAKEMTTK--DKTKQQQK 695
+K +VL QLP K+ +I + A + R + +++ E T+ + Q +K
Sbjct: 723 VKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTEMCNVMMQLRK 782
Query: 696 DALILFFNR---TAE---------AKIPSVIEYILDLLESGREKFLVFAHHKV------- 736
A +R TAE K P+ E DL+ E F H +
Sbjct: 783 MANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHI 842
Query: 737 -----------------VLDAITQELERK----------------------HVQH--IRI 755
VL I EL++K H QH +R+
Sbjct: 843 NNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRL 902
Query: 756 DGSTSSAEREDLCQQFQLSERHAVAVLSITAANMGLTFSSADLVVFAELFWNPGVLIQAE 815
DG T +ER L +F V +LS A +G+ +SA++V+ ++ NP QAE
Sbjct: 903 DGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAE 962
Query: 816 DRVHRIGQTSSVGIHYLVAKGTADDYLWPLIQEKIKV 852
DR HR+GQT V + L+++GT ++ + + Q+K+K+
Sbjct: 963 DRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKL 999
>gi|190358532 SWI/SNF-related, matrix-associated actin-dependent
regulator of chromatin, subfamily a, containing DEAD/H
box 1 isoform a [Homo sapiens]
Length = 1028
Score = 117 bits (294), Expect = 4e-26
Identities = 135/517 (26%), Positives = 218/517 (42%), Gaps = 112/517 (21%)
Query: 435 NLMPFQRAGVNFAIA---KGGRLLLADDMGLGKTIQAICIAAFYRKE---WPLLVVVPSS 488
+L P+Q+ G+N+ G +LAD+MGLGKTIQAI A+ +E P L+VVP+S
Sbjct: 496 SLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGNNGPHLIVVPAS 555
Query: 489 VRFTWEQAFLRWLPSLSPDC----------INVVVTGKDRLTAGLINIVSFDLLSKLEKQ 538
W + W P+L C I + + ++ + + S ++
Sbjct: 556 TIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNCAISSSDDRS 615
Query: 539 LKTPFKV--VIIDESHFLKNSRTARCRAAMPVLKVAKRVILLSGTPAMSRPAELYTQIIA 596
L K+ I DE H LKN + R + M + A +LL+GTP + EL + +
Sbjct: 616 LFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTI--NANNRLLLTGTPVQNNLLELMSLLNF 673
Query: 597 VKPTFFPQFHAFGLRYCDAKRMPWGWDYSGSSNLGELKLLLE-----------EAVMLRR 645
V P H F + +RM +S + + + + E + +LRR
Sbjct: 674 VMP------HMFSSSTSEIRRM-----FSSKTKSADEQSIYEKERIAHAKQIIKPFILRR 722
Query: 646 LKSDVLSQLPAKQRKIVVIAPGR--------INARTRAALDAAAKEMTTK--DKTKQQQK 695
+K +VL QLP K+ +I + A + R + +++ E T+ + Q +K
Sbjct: 723 VKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTEMCNVMMQLRK 782
Query: 696 DALILFFNR---TAE---------AKIPSVIEYILDLLESGREKFLVFAHHKV------- 736
A +R TAE K P+ E DL+ E F H +
Sbjct: 783 MANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHI 842
Query: 737 -----------------VLDAITQELERK----------------------HVQH--IRI 755
VL I EL++K H QH +R+
Sbjct: 843 NNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRL 902
Query: 756 DGSTSSAEREDLCQQFQLSERHAVAVLSITAANMGLTFSSADLVVFAELFWNPGVLIQAE 815
DG T +ER L +F V +LS A +G+ +SA++V+ ++ NP QAE
Sbjct: 903 DGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAE 962
Query: 816 DRVHRIGQTSSVGIHYLVAKGTADDYLWPLIQEKIKV 852
DR HR+GQT V + L+++GT ++ + + Q+K+K+
Sbjct: 963 DRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKL 999
>gi|54112403 chromodomain helicase DNA binding protein 7 [Homo
sapiens]
Length = 2997
Score = 115 bits (289), Expect = 1e-25
Identities = 128/527 (24%), Positives = 223/527 (42%), Gaps = 98/527 (18%)
Query: 434 SNLMPFQRAGVNFAIAKGGRL---LLADDMGLGKTIQAIC-IAAFYRK--EWPLLVVVPS 487
+ L +Q GVN+ + + +LAD+MGLGKTIQ+I + Y K P LV+ P
Sbjct: 966 NKLREYQLEGVNWLLFNWYNMRNCILADEMGLGKTIQSITFLYEIYLKGIHGPFLVIAPL 1025
Query: 488 SVRFTWEQAFLRWLPSLSPDCINVVVTGKDRLTAGLIN---------------------- 525
S WE+ F W +NVVV + + I
Sbjct: 1026 STIPNWEREFRTWTE------LNVVVYHGSQASRRTIQLYEMYFKDPQGRVIKGSYKFHA 1079
Query: 526 -IVSFD-LLSKLEKQLKTPFKVVIIDESHFLKNSRTARCRAAMPVLKVAKRVILLSGTPA 583
I +F+ +L+ + P++ V+IDE+H LKN R + + ++ + +V LL+GTP
Sbjct: 1080 IITTFEMILTDCPELRNIPWRCVVIDEAHRLKN-RNCKLLEGLKMMDLEHKV-LLTGTPL 1137
Query: 584 MSRPAELYTQIIAVKPTFFPQFHAFGLRYCDAKRMPWGWDYSGSSNLGELKLLLEEAVML 643
+ EL++ + ++P+ FP F + D K + +L+ +L + +ML
Sbjct: 1138 QNTVEELFSLLHFLEPSRFPSETTFMQEFGDLKT---------EEQVQKLQAIL-KPMML 1187
Query: 644 RRLKSDVLSQLPAKQRKIVVIAPGRINARTRAALDAAAKEMTTKDKTKQQ---------- 693
RRLK DV L K+ I+ + I + A+ K T K Q
Sbjct: 1188 RRLKEDVEKNLAPKEETIIEVELTNIQKKYYRAI--LEKNFTFLSKGGGQANVPNLLNTM 1245
Query: 694 ---------------QKDALILFFNRTAEAKIPS--------------VIEYILDLLESG 724
++ ++ F T A+ P +I+ +L L++G
Sbjct: 1246 MELRKCCNHPYLINGAEEKILEEFKETHNAESPDFQLQAMIQAAGKLVLIDKLLPKLKAG 1305
Query: 725 REKFLVFAHHKVVLDAITQELERKHVQHIRIDGSTSSAEREDLCQQFQLSER-HAVAVLS 783
+ L+F+ LD + L ++ + RIDG R+ +F + V +L
Sbjct: 1306 GHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLC 1365
Query: 784 ITAANMGLTFSSADLVVFAELFWNPGVLIQAEDRVHRIGQTSSVGIHYLVAKGTADDYLW 843
A +G+ ++AD + + WNP +QA+ R HRIGQ+ SV I+ L+ + + + ++
Sbjct: 1366 TRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYEREMF 1425
Query: 844 PLIQEKIKVLAEAGLSETNFSEMT--ESTDYLYKDPKQQKIYDLFQK 888
K + GL + M+ E+ + +++I DL +K
Sbjct: 1426 D------KASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIEDLLRK 1466
>gi|24308089 chromodomain helicase DNA binding protein 5 [Homo
sapiens]
Length = 1954
Score = 114 bits (286), Expect = 3e-25
Identities = 128/512 (25%), Positives = 218/512 (42%), Gaps = 89/512 (17%)
Query: 436 LMPFQRAGVN---FAIAKGGRLLLADDMGLGKTIQAICIAAFYRKE----WPLLVVVPSS 488
L P+Q G+N F+ A+G +LAD+MGLGKT+Q I KE P LV P S
Sbjct: 700 LHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAPLS 759
Query: 489 VRFTWEQAFLRWLPSLSPDCINVVVTGKDRLTAGLI--NIVSFD--------LLSKLEKQ 538
WE+ F W +PD V TG D+ + +I N SF+ + +++K+
Sbjct: 760 TIINWEREFEMW----APDFYVVTYTG-DKESRSVIRENEFSFEDNAIRSGKKVFRMKKE 814
Query: 539 LKTPFKV----------------------VIIDESHFLKNSRTARCRAAMPVLKVAKRVI 576
++ F V +++DE+H LKN+++ R + K+ + +
Sbjct: 815 VQIKFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKFFR-VLNSYKIDYK-L 872
Query: 577 LLSGTPAMSRPAELYTQIIAVKPTFFPQFHAFGLRYCDAKRMPWGWDYSGSSNLGELKLL 636
LL+GTP + EL+ + + P F F + D S + +L L
Sbjct: 873 LLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFA---------DISKEDQIKKLHDL 923
Query: 637 LEEAVMLRRLKSDVLSQLPAKQRKIVVIAPGR--------INARTRAALDA--AAKEMTT 686
L MLRRLK+DV +PAK IV + + I R AL++ +++
Sbjct: 924 LGPH-MLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGGGNQVSL 982
Query: 687 KDKTKQQQKDALILFFNRTAEAKIP-------------------SVIEYILDLLESGREK 727
+ +K + A + P +++ +L L +
Sbjct: 983 LNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGHR 1042
Query: 728 FLVFAHHKVVLDAITQELERKHVQHIRIDGSTSSAEREDLCQQFQL-SERHAVAVLSITA 786
L+F+ +LD + LE + ++ RIDG + R++ +F + +LS A
Sbjct: 1043 VLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRA 1102
Query: 787 ANMGLTFSSADLVVFAELFWNPGVLIQAEDRVHRIGQTSSVGIHYLVAKGTADDYLWPLI 846
+G+ ++AD V+ + WNP IQA R HRIGQ V I+ V + + ++ + +
Sbjct: 1103 GGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVA 1162
Query: 847 QEKI---KVLAEAGLSETNFSEMTESTDYLYK 875
+ K+ ++ GL + S + D + K
Sbjct: 1163 KRKMMLTHLVVRPGLGSKSGSMTKQELDDILK 1194
>gi|29244924 chromodomain helicase DNA binding protein 6 [Homo
sapiens]
Length = 2715
Score = 113 bits (283), Expect = 7e-25
Identities = 134/574 (23%), Positives = 235/574 (40%), Gaps = 96/574 (16%)
Query: 434 SNLMPFQRAGVNFAIAKG---GRLLLADDMGLGKTIQAICIAA--FYRK-EWPLLVVVPS 487
+ L +Q G+N+ + +LAD+MGLGKTIQ+I + F R P L++ P
Sbjct: 459 NQLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLSEIFLRGIHGPFLIIAPL 518
Query: 488 SVRFTWEQAFLRWLPSLSPDCINVVVTGKDRLTAGLIN---------------------- 525
S WE+ F W +N +V +++ +I
Sbjct: 519 STITNWEREFRTWTE------MNAIVYHGSQISRQMIQQYEMVYRDAQGNPLSGVFKFHV 572
Query: 526 -IVSFD-LLSKLEKQLKTPFKVVIIDESHFLKNSRTARCRAAMPVLKVAKRVILLSGTPA 583
I +F+ +L+ + K + VIIDE+H LKN R + + ++ + +V LL+GTP
Sbjct: 573 VITTFEMILADCPELKKIHWSCVIIDEAHRLKN-RNCKLLEGLKLMALEHKV-LLTGTPL 630
Query: 584 MSRPAELYTQIIAVKPTFFPQFHAFGLRYCDAKRMPWGWDYSGSSNLGELKLLLEEAVML 643
+ EL++ + ++P+ FP AF + D K + +L+ +L + +ML
Sbjct: 631 QNSVEELFSLLNFLEPSQFPSETAFLEEFGDLKT---------EEQVKKLQSIL-KPMML 680
Query: 644 RRLKSDVLSQLPAKQRKIVVIAPGRINARTRAALDAAAKEMTTKDKTKQQQ--------- 694
RRLK DV L KQ I+ + I + A+ TK +
Sbjct: 681 RRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLTKGANQHNMPNLINTMME 740
Query: 695 --------------KDALILFFNRTAEAKIPS--------------VIEYILDLLESGRE 726
++ ++ F +T P +I+ +L L +G
Sbjct: 741 LRKCCNHPYLINGAEEKILEDFRKTHSPDAPDFQLQAMIQAAGKLVLIDKLLPKLIAGGH 800
Query: 727 KFLVFAHHKVVLDAITQELERKHVQHIRIDGSTSSAEREDLCQQF-QLSERHAVAVLSIT 785
K L+F+ LD + L ++ + RIDG R+ +F + V +L
Sbjct: 801 KVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFLLCTR 860
Query: 786 AANMGLTFSSADLVVFAELFWNPGVLIQAEDRVHRIGQTSSVGIHYLVAKGTADDYLWPL 845
A +G+ ++AD + + WNP +QA+ R HRIGQ+ +V ++ L+ + + + ++
Sbjct: 861 AGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDK 920
Query: 846 IQEKIKVLAEAGLSETNFSEMTESTDYLYKDPKQQKIYDLFQKS-----FEKEGSDMELL 900
K+ L +A L + N T L K ++ DL +K ++E +
Sbjct: 921 ASLKLG-LDKAVLQDINRKGGTNGVQQLSK----MEVEDLLRKGAYGALMDEEDEGSKFC 975
Query: 901 EAAESFDPGSASGTSGSSSQNMGDTLDESSLTAS 934
E + T S+ G T ++S AS
Sbjct: 976 EEDIDQILQRRTHTITIQSEGKGSTFAKASFVAS 1009
>gi|52630326 chromodomain helicase DNA binding protein 3 isoform 1
[Homo sapiens]
Length = 2000
Score = 112 bits (280), Expect = 2e-24
Identities = 135/580 (23%), Positives = 232/580 (40%), Gaps = 99/580 (17%)
Query: 427 EVDPKLVS----NLMPFQRAGVN---FAIAKGGRLLLADDMGLGKTIQAICIAAFYRKE- 478
E P+ ++ L +Q G+N F+ A+G +LAD+MGLGKTIQ I KE
Sbjct: 723 ETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEG 782
Query: 479 ---WPLLVVVPSSVRFTWEQAFLRWLPSLSPDCINVVVTGKDRLTAGLINIVSFDLLSKL 535
P LV P S WE+ F W P VV D+ + +I F
Sbjct: 783 HTKGPFLVSAPLSTIINWEREFQMWAPK-----FYVVTYTGDKDSRAIIRENEFSFEDNA 837
Query: 536 EKQLKTPFKV--------------------------------VIIDESHFLKNSRTARCR 563
K K FK+ +++DE+H LKN+++ R
Sbjct: 838 IKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFR 897
Query: 564 AAMPVLKVAKRVILLSGTPAMSRPAELYTQIIAVKPTFFPQFHAFGLRYCDAKRMPWGWD 623
+ K+ + +LL+GTP + EL+ + + P F F + D
Sbjct: 898 -VLNGYKIDHK-LLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFA---------D 946
Query: 624 YSGSSNLGELKLLLEEAVMLRRLKSDVLSQLPAKQRKIVVIAPGRINAR-TRAALDAAAK 682
S + +L LL MLRRLK+DV +PAK IV + + + + L +
Sbjct: 947 ISKEDQIKKLHDLLGPH-MLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFE 1005
Query: 683 EMTTKDKTKQQQKDALILFFNRTA------------EAKIPS----------------VI 714
+ ++ Q +++ + K+PS ++
Sbjct: 1006 ALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALIKSSGKLMLL 1065
Query: 715 EYILDLLESGREKFLVFAHHKVVLDAITQELERKHVQHIRIDGSTSSAEREDLCQQFQL- 773
+ +L L+ + L+F+ +LD + L+ + ++ RIDG + A R++ +F
Sbjct: 1066 QKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAP 1125
Query: 774 SERHAVAVLSITAANMGLTFSSADLVVFAELFWNPGVLIQAEDRVHRIGQTSSVGIHYLV 833
+ +LS A +G+ ++AD V+ + WNP IQA R HRIGQ + V I+ V
Sbjct: 1126 GAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFV 1185
Query: 834 AKGTADDYLWPLIQEKI---KVLAEAGLSETNFSEMTESTDYLYKDPKQQKIYDLFQKSF 890
+ + ++ + + + K+ ++ GL S + D + K ++ D +
Sbjct: 1186 TRASVEERITQVAKRKMMLTHLVVRPGLGSKAGSMSKQELDDILKFGTEELFKD--ENEG 1243
Query: 891 EKEGSDMELL----EAAESFDPGSASGTSGSSSQNMGDTL 926
E + D ++ EA + T + QNM + L
Sbjct: 1244 ENKEEDSSVIHYDNEAIARLLDRNQDATEDTDVQNMNEYL 1283
>gi|52630322 chromodomain helicase DNA binding protein 3 isoform 2
[Homo sapiens]
Length = 1966
Score = 112 bits (280), Expect = 2e-24
Identities = 135/580 (23%), Positives = 232/580 (40%), Gaps = 99/580 (17%)
Query: 427 EVDPKLVS----NLMPFQRAGVN---FAIAKGGRLLLADDMGLGKTIQAICIAAFYRKE- 478
E P+ ++ L +Q G+N F+ A+G +LAD+MGLGKTIQ I KE
Sbjct: 723 ETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEG 782
Query: 479 ---WPLLVVVPSSVRFTWEQAFLRWLPSLSPDCINVVVTGKDRLTAGLINIVSFDLLSKL 535
P LV P S WE+ F W P VV D+ + +I F
Sbjct: 783 HTKGPFLVSAPLSTIINWEREFQMWAPK-----FYVVTYTGDKDSRAIIRENEFSFEDNA 837
Query: 536 EKQLKTPFKV--------------------------------VIIDESHFLKNSRTARCR 563
K K FK+ +++DE+H LKN+++ R
Sbjct: 838 IKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFR 897
Query: 564 AAMPVLKVAKRVILLSGTPAMSRPAELYTQIIAVKPTFFPQFHAFGLRYCDAKRMPWGWD 623
+ K+ + +LL+GTP + EL+ + + P F F + D
Sbjct: 898 -VLNGYKIDHK-LLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFA---------D 946
Query: 624 YSGSSNLGELKLLLEEAVMLRRLKSDVLSQLPAKQRKIVVIAPGRINAR-TRAALDAAAK 682
S + +L LL MLRRLK+DV +PAK IV + + + + L +
Sbjct: 947 ISKEDQIKKLHDLLGPH-MLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFE 1005
Query: 683 EMTTKDKTKQQQKDALILFFNRTA------------EAKIPS----------------VI 714
+ ++ Q +++ + K+PS ++
Sbjct: 1006 ALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALIKSSGKLMLL 1065
Query: 715 EYILDLLESGREKFLVFAHHKVVLDAITQELERKHVQHIRIDGSTSSAEREDLCQQFQL- 773
+ +L L+ + L+F+ +LD + L+ + ++ RIDG + A R++ +F
Sbjct: 1066 QKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAP 1125
Query: 774 SERHAVAVLSITAANMGLTFSSADLVVFAELFWNPGVLIQAEDRVHRIGQTSSVGIHYLV 833
+ +LS A +G+ ++AD V+ + WNP IQA R HRIGQ + V I+ V
Sbjct: 1126 GAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFV 1185
Query: 834 AKGTADDYLWPLIQEKI---KVLAEAGLSETNFSEMTESTDYLYKDPKQQKIYDLFQKSF 890
+ + ++ + + + K+ ++ GL S + D + K ++ D +
Sbjct: 1186 TRASVEERITQVAKRKMMLTHLVVRPGLGSKAGSMSKQELDDILKFGTEELFKD--ENEG 1243
Query: 891 EKEGSDMELL----EAAESFDPGSASGTSGSSSQNMGDTL 926
E + D ++ EA + T + QNM + L
Sbjct: 1244 ENKEEDSSVIHYDNEAIARLLDRNQDATEDTDVQNMNEYL 1283
>gi|158420731 chromodomain helicase DNA binding protein 3 isoform 3
[Homo sapiens]
Length = 2059
Score = 112 bits (280), Expect = 2e-24
Identities = 135/580 (23%), Positives = 232/580 (40%), Gaps = 99/580 (17%)
Query: 427 EVDPKLVS----NLMPFQRAGVN---FAIAKGGRLLLADDMGLGKTIQAICIAAFYRKE- 478
E P+ ++ L +Q G+N F+ A+G +LAD+MGLGKTIQ I KE
Sbjct: 782 ETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEG 841
Query: 479 ---WPLLVVVPSSVRFTWEQAFLRWLPSLSPDCINVVVTGKDRLTAGLINIVSFDLLSKL 535
P LV P S WE+ F W P VV D+ + +I F
Sbjct: 842 HTKGPFLVSAPLSTIINWEREFQMWAPK-----FYVVTYTGDKDSRAIIRENEFSFEDNA 896
Query: 536 EKQLKTPFKV--------------------------------VIIDESHFLKNSRTARCR 563
K K FK+ +++DE+H LKN+++ R
Sbjct: 897 IKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFR 956
Query: 564 AAMPVLKVAKRVILLSGTPAMSRPAELYTQIIAVKPTFFPQFHAFGLRYCDAKRMPWGWD 623
+ K+ + +LL+GTP + EL+ + + P F F + D
Sbjct: 957 -VLNGYKIDHK-LLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFA---------D 1005
Query: 624 YSGSSNLGELKLLLEEAVMLRRLKSDVLSQLPAKQRKIVVIAPGRINAR-TRAALDAAAK 682
S + +L LL MLRRLK+DV +PAK IV + + + + L +
Sbjct: 1006 ISKEDQIKKLHDLLGPH-MLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFE 1064
Query: 683 EMTTKDKTKQQQKDALILFFNRTA------------EAKIPS----------------VI 714
+ ++ Q +++ + K+PS ++
Sbjct: 1065 ALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALIKSSGKLMLL 1124
Query: 715 EYILDLLESGREKFLVFAHHKVVLDAITQELERKHVQHIRIDGSTSSAEREDLCQQFQL- 773
+ +L L+ + L+F+ +LD + L+ + ++ RIDG + A R++ +F
Sbjct: 1125 QKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAP 1184
Query: 774 SERHAVAVLSITAANMGLTFSSADLVVFAELFWNPGVLIQAEDRVHRIGQTSSVGIHYLV 833
+ +LS A +G+ ++AD V+ + WNP IQA R HRIGQ + V I+ V
Sbjct: 1185 GAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFV 1244
Query: 834 AKGTADDYLWPLIQEKI---KVLAEAGLSETNFSEMTESTDYLYKDPKQQKIYDLFQKSF 890
+ + ++ + + + K+ ++ GL S + D + K ++ D +
Sbjct: 1245 TRASVEERITQVAKRKMMLTHLVVRPGLGSKAGSMSKQELDDILKFGTEELFKD--ENEG 1302
Query: 891 EKEGSDMELL----EAAESFDPGSASGTSGSSSQNMGDTL 926
E + D ++ EA + T + QNM + L
Sbjct: 1303 ENKEEDSSVIHYDNEAIARLLDRNQDATEDTDVQNMNEYL 1342
>gi|21914927 helicase, lymphoid-specific [Homo sapiens]
Length = 838
Score = 111 bits (277), Expect = 4e-24
Identities = 143/599 (23%), Positives = 236/599 (39%), Gaps = 125/599 (20%)
Query: 455 LLADDMGLGKTIQAICIAAFYRKE---WPLLVVVPSSVRFTWEQAFLRWLPSL------- 504
+LAD+MGLGKT+Q I A + P LV P S W F R+ P +
Sbjct: 245 ILADEMGLGKTVQCIATIALMIQRGVPGPFLVCGPLSTLPNWMAEFKRFTPDIPTMLYHG 304
Query: 505 ----SPDCINVVVTGKDRLTAGLINIVSFDLLSKLEKQLKTPF-KVVIIDESHFLKNSRT 559
+ + K L + I SF++ + L+ + K +I+DE H +KN
Sbjct: 305 TQEERQKLVRNIYKRKGTLQIHPVVITSFEIAMRDRNALQHCYWKYLIVDEGHRIKN--- 361
Query: 560 ARCRAAMPVLKV-AKRVILLSGTPAMSRPAELYTQIIAVKPTFFPQFHAFGLRYCDAKRM 618
+CR + + A +LL+GTP + +EL++ + + P F +F +
Sbjct: 362 MKCRLIRELKRFNADNKLLLTGTPLQNNLSELWSLLNFLLPDVFDDLKSFESWFDITSLS 421
Query: 619 PWGWDYSGSSNLGELKLLLEEAV---MLRRLKSDVLSQLPAKQRKIVVIAP--------- 666
D + +L + + +LRRLKSDV ++P K R++VV AP
Sbjct: 422 ETAEDIIAKEREQNVLHMLHQILTPFLLRRLKSDVALEVPPK-REVVVYAPLSKKQEIFY 480
Query: 667 -------------------------GRINARTRAALDAAAKEMTTKDKTK-------QQQ 694
GR RTR +++ + + + K +
Sbjct: 481 TAIVNRTIANMFGSSEKETIELSPTGRPKRRTRKSINYSKIDDFPNELEKLISQIQPEVD 540
Query: 695 KDALILFFNRTAEAKI-----------------PSVIEYILD----------LLESGREK 727
++ ++ N E+++ P +IEY +D L + K
Sbjct: 541 RERAVVEVNIPVESEVNLKLQNIMMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGK 600
Query: 728 FLVFAH---------HKV--------VLDAITQELERKHVQHIRIDGSTSSAEREDLCQQ 770
FL+ HKV +LD + + R+DGS S +ERE
Sbjct: 601 FLILDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHS 660
Query: 771 FQLSERHAVAVLSITAANMGLTFSSADLVVFAELFWNPGVLIQAEDRVHRIGQTSSVGIH 830
F + ++S A +G+ ++AD V+ + WNP +QA+DR HRIGQT V ++
Sbjct: 661 FNTDPEVFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVY 720
Query: 831 YLVAKGTADDYLWPLIQEKIKVL-----------AEAGLS-ETNFSEMTESTDYLYKDPK 878
LV T D + K K+ ++GL+ NF + E + L
Sbjct: 721 RLVTANTIDQKIVERAAAKRKLEKLIIHKNHFKGGQSGLNLSKNFLDPKELMELLKSRDY 780
Query: 879 QQKIYDLFQKSFEKEGSDMELLEAAESFDPGSASGTSGSSSQNMG-DTLDESSLTASPQ 936
+++I + S EK SD +L + D SG + MG + E+S +SP+
Sbjct: 781 EREI----KGSREKVISDKDLELLLDRSDLIDQMNASGPIKEKMGIFKILENSEDSSPE 835
>gi|68299795 chromodomain helicase DNA binding protein 1 [Homo
sapiens]
Length = 1710
Score = 110 bits (274), Expect = 8e-24
Identities = 115/466 (24%), Positives = 200/466 (42%), Gaps = 67/466 (14%)
Query: 436 LMPFQRAGVNFAI---AKGGRLLLADDMGLGKTIQAICIAAFYRKEW----PLLVVVPSS 488
L +Q G+N+ KG +LAD+MGLGKTIQ I + E P L+VVP S
Sbjct: 481 LRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLS 540
Query: 489 VRFTWEQAFLRWLPSLSP-------DCINVVVTGK------DRLTAGLINIVSFDLLSKL 535
+W++ W ++ + N++ T + RL ++ + ++++L K
Sbjct: 541 TLTSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWTHHQTKRLKFNIL-LTTYEILLKD 599
Query: 536 EKQLK-TPFKVVIIDESHFLKNSRTARCRAAMPVLKVAKRVILLSGTPAMSRPAELYTQI 594
+ L + + +DE+H LKN + + + + +L++GTP + EL++ +
Sbjct: 600 KAFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFK--SNHRLLITGTPLQNSLKELWSLL 657
Query: 595 IAVKPTFFPQFHAFGLRYCDAKRMPWGWDYSGSSNLGELKLLLEEAVMLRRLKSDVLSQL 654
+ P F + F + G +Y +S EL E +LRR+K DV L
Sbjct: 658 HFIMPEKFSSWEDFEEEHGK------GREYGYASLHKEL-----EPFLLRRVKKDVEKSL 706
Query: 655 PAKQRKIVVIAPGRIN--------ARTRAALDAAAKEMTT-------------------- 686
PAK +I+ + + R AL +K T+
Sbjct: 707 PAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIK 766
Query: 687 -KDKTKQQQKDALILFFNRTAEAKIPSVIEYILDLLESGREKFLVFAHHKVVLDAITQEL 745
D + K + R++ I +++ +L L + L+F+ +LD + + L
Sbjct: 767 PPDNNEFYNKQEALQHLIRSSGKLI--LLDKLLIRLRERGNRVLIFSQMVRMLDILAEYL 824
Query: 746 ERKHVQHIRIDGSTSSAEREDLCQQFQLSERHAVA-VLSITAANMGLTFSSADLVVFAEL 804
+ + R+DGS R+ F +LS A +G+ +SAD VV +
Sbjct: 825 KYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDS 884
Query: 805 FWNPGVLIQAEDRVHRIGQTSSVGIHYLVAKGTADDYLWPLIQEKI 850
WNP +QA+ R HRIGQ V I+ LV KG+ ++ + ++K+
Sbjct: 885 DWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKM 930
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.130 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,454,151
Number of Sequences: 37866
Number of extensions: 1615733
Number of successful extensions: 7422
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 162
Number of HSP's that attempted gapping in prelim test: 6924
Number of HSP's gapped (non-prelim): 547
length of query: 954
length of database: 18,247,518
effective HSP length: 112
effective length of query: 842
effective length of database: 14,006,526
effective search space: 11793494892
effective search space used: 11793494892
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.