Guide to the Human Genome
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Name: SNAP25 Sequence: fasta or formatted (206aa) NCBI GI: 18765735
Description:

synaptosomal-associated protein 25 isoform SNAP25B

Referenced in:

Gene Families and the Nervous System
ER, Golgi, and the Secretory Pathway
Synapses
Tripartite Motif Family

Other entries for this name:
alt prot [206aa] synaptosomal-associated protein 25 isoform SNAP25A
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8         16           1
 C cysteine            1.9          4           1
 D aspartate           9.2         19           1
 E glutamate          11.7         24           2
 F phenylalanine       1.0          2           1
 G glycine             6.8         14           2
 H histidine           0.5          1           1
 I isoleucine          5.3         11           2
 K lysine              5.8         12           2
 L leucine             7.8         16           1
 M methionine          6.3         13           1
 N asparagine          6.8         14           2
 P proline             1.0          2           1
 Q glutamine           6.3         13           1
 R arginine            8.3         17           2
 S serine              4.9         10           2
 T threonine           3.4          7           1
 V valine              4.4          9           2
 W tryptophan          0.5          1           1
 Y tyrosine            0.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   synaptosomal-associated protein 25 isoform SNAP25B [... 
SNAP25                0.956   synaptosomal-associated protein 25 isoform SNAP25A [...
SNAP23                0.551   synaptosomal-associated protein 23 isoform SNAP23A [...
SNAP23                0.439   synaptosomal-associated protein 23 isoform SNAP23B [...
SNAP29                0.086   synaptosomal-associated protein 29 
MYH7                  0.063   myosin, heavy chain 7, cardiac muscle, beta 
MYH3                  0.060   myosin, heavy chain 3, skeletal muscle, embryonic [H...
MYH8                  0.060   myosin, heavy chain 8, skeletal muscle, perinatal [...
MYH2                  0.057   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH2                  0.057   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH6                  0.055   myosin heavy chain 6 
MYH4                  0.055   myosin, heavy polypeptide 4, skeletal muscle 
MYH1                  0.052   myosin, heavy chain 1, skeletal muscle, adult [Homo...
MYH13                 0.052   myosin, heavy polypeptide 13, skeletal muscle [Homo...
STX10                 0.050   syntaxin 10 
TPM3                  0.044   tropomyosin 3 isoform 5 
TPM3                  0.044   tropomyosin 3 isoform 4 
MYH7B                 0.044   myosin, heavy polypeptide 7B, cardiac muscle, beta ...
STX6                  0.039   syntaxin 6 
TPM1                  0.034   tropomyosin 1 alpha chain isoform 6 
TPM1                  0.034   tropomyosin 1 alpha chain isoform 1 
TPM1                  0.034   tropomyosin 1 alpha chain isoform 3 
LOC100133758          0.031   PREDICTED: hypothetical protein, partial 
TPM3                  0.031   tropomyosin 3 isoform 3 
TPM3                  0.031   tropomyosin 3 isoform 1 
TPM3                  0.031   tropomyosin 3 isoform 2 
STX8                  0.031   syntaxin 8 
TPM1                  0.031   tropomyosin 1 alpha chain isoform 2 
LOC283685             0.029   PREDICTED: golgi autoantigen, golgin subfamily a-li...
EIF3A                 0.029   eukaryotic translation initiation factor 3, subunit 1...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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