Guide to the Human Genome
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Name: LOC728927 Sequence: fasta or formatted (427aa) NCBI GI: 169172289
Description:

PREDICTED: similar to hCG40110

Not currently referenced in the text

Other entries for this name:
alt prot {427aa} PREDICTED: hypothetical protein LOC728927
alt prot {427aa} PREDICTED: similar to hCG40110
alt mRNA {427aa} PREDICTED: similar to hCG40110
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.5         15           1
 C cysteine            8.0         34           1
 D aspartate           4.0         17           1
 E glutamate           8.7         37           2
 F phenylalanine       5.6         24           1
 G glycine             5.6         24           1
 H histidine           6.6         28           1
 I isoleucine          3.7         16           2
 K lysine             13.3         57           2
 L leucine             6.3         27           1
 M methionine          0.9          4           1
 N asparagine          3.3         14           2
 P proline             2.8         12           1
 Q glutamine           2.3         10           2
 R arginine            5.6         24           1
 S serine              6.6         28           2
 T threonine           5.9         25           1
 V valine              2.8         12           1
 W tryptophan          1.2          5           1
 Y tyrosine            3.3         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG40110 
LOC728927             1.000   PREDICTED: similar to hCG40110 
LOC728927             0.997   PREDICTED: hypothetical protein LOC728927 
LOC728927             0.997   PREDICTED: similar to hCG40110 
ZNF727                0.804   zinc finger protein 727 
LOC100294071          0.802   PREDICTED: similar to zinc finger protein 208 [Homo...
ZNF92                 0.599   zinc finger protein 92 isoform 2 
ZNF682                0.580   zinc finger protein 682 isoform 1 
ZNF680                0.571   zinc finger protein 680 isoform 1 
ZNF626                0.571   zinc finger protein 626 isoform 1 
ZNF479                0.571   zinc finger protein 479 
ZNF431                0.568   zinc finger protein 431 
ZNF429                0.566   zinc finger protein 429 
ZNF726                0.565   PREDICTED: zinc finger protein 726 
ZNF726                0.565   PREDICTED: zinc finger protein 726 
ZNF726                0.565   PREDICTED: zinc finger protein 726 
ZNF716                0.564   zinc finger protein 716 
ZNF737                0.563   zinc finger protein 737 
ZNF737                0.563   PREDICTED: zinc finger protein 737 
ZNF737                0.563   PREDICTED: zinc finger protein 737 
ZNF737                0.563   PREDICTED: zinc finger protein 737 
LOC646864             0.562   PREDICTED: similar to hCG36734 
LOC646864             0.562   PREDICTED: similar to hCG36734 
LOC646864             0.562   PREDICTED: similar to hCG36734 
ZNF273                0.560   zinc finger protein 273 
ZNF66                 0.558   PREDICTED: zinc finger protein 66 
ZNF66                 0.558   PREDICTED: zinc finger protein 66 
ZNF66                 0.558   PREDICTED: zinc finger protein 66 
ZNF85                 0.551   zinc finger protein 85 
ZNF708                0.548   zinc finger protein 708 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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