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Search of human proteins with 10834984
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|10834984 interleukin 6 precursor [Homo sapiens]
(212 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|10834984 interleukin 6 precursor [Homo sapiens] 417 e-117
gi|13899233 tetratricopeptide repeat domain 25 [Homo sapiens] 32 0.30
gi|189409130 zinc finger E-box binding homeobox 1 isoform a [Hom... 32 0.52
gi|189409128 zinc finger E-box binding homeobox 1 isoform b [Hom... 32 0.52
gi|42476320 sushi domain containing 1 [Homo sapiens] 32 0.52
gi|48255913 tripartite motif-containing 16 [Homo sapiens] 31 0.68
gi|154350226 hypothetical protein LOC79632 isoform 1 [Homo sapiens] 31 0.68
gi|82617564 tripartite motif-containing 16-like [Homo sapiens] 31 0.68
gi|27437051 colony stimulating factor 3 isoform c [Homo sapiens] 30 1.2
gi|27437049 colony stimulating factor 3 isoform b precursor [Hom... 30 1.2
gi|194294521 intersectin 2 isoform 1 [Homo sapiens] 29 2.6
gi|194294525 intersectin 2 isoform 2 [Homo sapiens] 29 2.6
gi|9910266 kinesin family member 15 [Homo sapiens] 29 2.6
gi|106879206 chromosome 14 open reading frame 169 [Homo sapiens] 28 4.4
gi|18677733 copine IV [Homo sapiens] 28 4.4
gi|54607141 vacuolar protein sorting 13D isoform 2 [Homo sapiens] 28 5.7
gi|54607139 vacuolar protein sorting 13D isoform 1 [Homo sapiens] 28 5.7
gi|12667788 myosin, heavy polypeptide 9, non-muscle [Homo sapiens] 28 7.5
gi|115648142 centrosomal protein 164kDa [Homo sapiens] 28 7.5
gi|217416374 hypothetical protein LOC92749 [Homo sapiens] 28 7.5
gi|92091575 coiled-coil domain containing 57 [Homo sapiens] 28 7.5
gi|55770862 thyroglobulin [Homo sapiens] 27 9.8
gi|239758139 PREDICTED: hypothetical protein [Homo sapiens] 27 9.8
gi|40353729 Ras and Rab interactor 3 [Homo sapiens] 27 9.8
gi|190343010 SP110 nuclear body protein isoform a [Homo sapiens] 27 9.8
gi|190343008 SP110 nuclear body protein isoform b [Homo sapiens] 27 9.8
gi|190343006 SP110 nuclear body protein isoform c [Homo sapiens] 27 9.8
gi|7706527 A-kinase anchor protein 7 isoform gamma [Homo sapiens] 27 9.8
gi|55749758 DIP2 disco-interacting protein 2 homolog B [Homo sap... 27 9.8
gi|14270499 protocadherin gamma subfamily B, 4 isoform 2 precurs... 27 9.8
>gi|10834984 interleukin 6 precursor [Homo sapiens]
Length = 212
Score = 417 bits (1071), Expect = e-117
Identities = 212/212 (100%), Positives = 212/212 (100%)
Query: 1 MNSFSTSAFGPVAFSLGLLLVLPAAFPAPVPPGEDSKDVAAPHRQPLTSSERIDKQIRYI 60
MNSFSTSAFGPVAFSLGLLLVLPAAFPAPVPPGEDSKDVAAPHRQPLTSSERIDKQIRYI
Sbjct: 1 MNSFSTSAFGPVAFSLGLLLVLPAAFPAPVPPGEDSKDVAAPHRQPLTSSERIDKQIRYI 60
Query: 61 LDGISALRKETCNKSNMCESSKEALAENNLNLPKMAEKDGCFQSGFNEETCLVKIITGLL 120
LDGISALRKETCNKSNMCESSKEALAENNLNLPKMAEKDGCFQSGFNEETCLVKIITGLL
Sbjct: 61 LDGISALRKETCNKSNMCESSKEALAENNLNLPKMAEKDGCFQSGFNEETCLVKIITGLL 120
Query: 121 EFEVYLEYLQNRFESSEEQARAVQMSTKVLIQFLQKKAKNLDAITTPDPTTNASLLTKLQ 180
EFEVYLEYLQNRFESSEEQARAVQMSTKVLIQFLQKKAKNLDAITTPDPTTNASLLTKLQ
Sbjct: 121 EFEVYLEYLQNRFESSEEQARAVQMSTKVLIQFLQKKAKNLDAITTPDPTTNASLLTKLQ 180
Query: 181 AQNQWLQDMTTHLILRSFKEFLQSSLRALRQM 212
AQNQWLQDMTTHLILRSFKEFLQSSLRALRQM
Sbjct: 181 AQNQWLQDMTTHLILRSFKEFLQSSLRALRQM 212
>gi|13899233 tetratricopeptide repeat domain 25 [Homo sapiens]
Length = 672
Score = 32.3 bits (72), Expect = 0.30
Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 9/93 (9%)
Query: 121 EFEVYLEYLQNRFESSEEQARAVQMSTKVLIQFLQKKAKNLDAITTPDPTTNASLLTKLQ 180
EF V ++ Q +S ++++ K + FL K+A+N+ A P P + LL +
Sbjct: 115 EFRVGIQKAQEAINNSVGSPSSIKLENKGDLSFLSKQAENIKAQQKPQPMKH--LLHPTK 172
Query: 181 AQNQWLQDMTTHLILRSF-------KEFLQSSL 206
+ +W + + +R KE+L+ L
Sbjct: 173 GEPKWKASLKSEKTVRQLLGELYVDKEYLEKLL 205
>gi|189409130 zinc finger E-box binding homeobox 1 isoform a [Homo
sapiens]
Length = 1108
Score = 31.6 bits (70), Expect = 0.52
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Query: 67 LRKETCNKSNMCESSKEALAENNLNLPKMAEKDGCFQSGFNEETCLV 113
L+KE +N C+S K L E+ L +EKD F+ G N+ TCL+
Sbjct: 476 LKKENPVATNSCKSEK--LPED---LTVKSEKDKSFEGGVNDSTCLL 517
>gi|189409128 zinc finger E-box binding homeobox 1 isoform b [Homo
sapiens]
Length = 1124
Score = 31.6 bits (70), Expect = 0.52
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Query: 67 LRKETCNKSNMCESSKEALAENNLNLPKMAEKDGCFQSGFNEETCLV 113
L+KE +N C+S K L E+ L +EKD F+ G N+ TCL+
Sbjct: 492 LKKENPVATNSCKSEK--LPED---LTVKSEKDKSFEGGVNDSTCLL 533
>gi|42476320 sushi domain containing 1 [Homo sapiens]
Length = 747
Score = 31.6 bits (70), Expect = 0.52
Identities = 24/80 (30%), Positives = 32/80 (40%)
Query: 10 GPVAFSLGLLLVLPAAFPAPVPPGEDSKDVAAPHRQPLTSSERIDKQIRYILDGISALRK 69
GP L LLL+L A A PG D DV A + T +R K+I G +
Sbjct: 9 GPSRRLLPLLLLLGLARGAAGAPGPDGLDVCATCHEHATCQQREGKKICICNYGFVGNGR 68
Query: 70 ETCNKSNMCESSKEALAENN 89
C N C+ + N+
Sbjct: 69 TQCVDKNECQFGATLVCGNH 88
>gi|48255913 tripartite motif-containing 16 [Homo sapiens]
Length = 564
Score = 31.2 bits (69), Expect = 0.68
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 123 EVYLEYLQNRFESSEEQARAVQMSTKVLIQFLQK--KAKNLDAITTPDPTTNASLLTKLQ 180
+ +LEY E S+++ + + +QFL++ K KN + IT P + L KL
Sbjct: 252 KAHLEYRSAEMEKSKQELERMAAISNT-VQFLEEYCKFKNTEDITFP--SVYVGLKDKLS 308
Query: 181 AQNQWLQDMTTHLI--LRSFKEFLQ 203
+ + + T HLI L ++K+ LQ
Sbjct: 309 GIRKVITESTVHLIQLLENYKKKLQ 333
>gi|154350226 hypothetical protein LOC79632 isoform 1 [Homo sapiens]
Length = 1140
Score = 31.2 bits (69), Expect = 0.68
Identities = 27/113 (23%), Positives = 53/113 (46%), Gaps = 18/113 (15%)
Query: 53 IDKQIRYILDGISALRKETCNKS----NMCESSKEALAENNLNLPKMAEKD--------- 99
+DK+++++ + ISAL KE K + S + + + +L K EK+
Sbjct: 886 LDKEVQHLHENISALTKELEFKGKEILRIRSESNQQIRLHEQDLNKRLEKELDVMTADHL 945
Query: 100 ---GCFQSGFNEETCLVKIITGLLEFEVYLEYLQNRFESSEEQARAVQMSTKV 149
++ FN+ L+K I L +V LE ++ ++ E + +QM T++
Sbjct: 946 REKNIMRADFNKTNELLKEINAAL--QVSLEEMEEKYLMRESKPEDIQMITEL 996
>gi|82617564 tripartite motif-containing 16-like [Homo sapiens]
Length = 348
Score = 31.2 bits (69), Expect = 0.68
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 123 EVYLEYLQNRFESSEEQARAVQMSTKVLIQFLQK--KAKNLDAITTPDPTTNASLLTKLQ 180
+ +LEY E S+++ + + +QFL++ K KN + IT P + L KL
Sbjct: 36 KAHLEYRSAEMEKSKQELETMAAISNT-VQFLEEYCKFKNTEDITFP--SVYIGLKDKLS 92
Query: 181 AQNQWLQDMTTHLI--LRSFKEFLQ 203
+ + + T HLI L ++K+ LQ
Sbjct: 93 GIRKVITESTVHLIQLLENYKKKLQ 117
>gi|27437051 colony stimulating factor 3 isoform c [Homo sapiens]
Length = 200
Score = 30.4 bits (67), Expect = 1.2
Identities = 31/158 (19%), Positives = 60/158 (37%), Gaps = 5/158 (3%)
Query: 55 KQIRYILDGISALRKETCNKSNMCESSKEALAENNLNLPKMAEKDGCFQSGFNEETCLVK 114
+Q+R I +AL+++ C +C + L ++L +P A C CL +
Sbjct: 45 EQVRKIQGDGAALQEKLCATYKLCHPEELVLLGHSLGIP-WAPLSSCPSQALQLAGCLSQ 103
Query: 115 IITGLLEFEVYLEYLQNRFESSEEQARAVQMSTKVLIQFLQKKAKNLDAITTPDPTTNAS 174
+ +GL ++ L+ L+ +Q+ + ++ + L PT A
Sbjct: 104 LHSGLFLYQGLLQALEGISPELGPTLDTLQLDVADFATTIWQQMEELGMAPALQPTQGAM 163
Query: 175 LLTKLQAQNQWLQDMTTHLILRSFKEFLQSSLRALRQM 212
Q + L+ + FL+ S R LR +
Sbjct: 164 PAFASAFQRR----AGGVLVASHLQSFLEVSYRVLRHL 197
>gi|27437049 colony stimulating factor 3 isoform b precursor [Homo
sapiens]
Length = 204
Score = 30.4 bits (67), Expect = 1.2
Identities = 31/158 (19%), Positives = 60/158 (37%), Gaps = 5/158 (3%)
Query: 55 KQIRYILDGISALRKETCNKSNMCESSKEALAENNLNLPKMAEKDGCFQSGFNEETCLVK 114
+Q+R I +AL+++ C +C + L ++L +P A C CL +
Sbjct: 49 EQVRKIQGDGAALQEKLCATYKLCHPEELVLLGHSLGIP-WAPLSSCPSQALQLAGCLSQ 107
Query: 115 IITGLLEFEVYLEYLQNRFESSEEQARAVQMSTKVLIQFLQKKAKNLDAITTPDPTTNAS 174
+ +GL ++ L+ L+ +Q+ + ++ + L PT A
Sbjct: 108 LHSGLFLYQGLLQALEGISPELGPTLDTLQLDVADFATTIWQQMEELGMAPALQPTQGAM 167
Query: 175 LLTKLQAQNQWLQDMTTHLILRSFKEFLQSSLRALRQM 212
Q + L+ + FL+ S R LR +
Sbjct: 168 PAFASAFQRR----AGGVLVASHLQSFLEVSYRVLRHL 201
>gi|194294521 intersectin 2 isoform 1 [Homo sapiens]
Length = 1697
Score = 29.3 bits (64), Expect = 2.6
Identities = 30/135 (22%), Positives = 59/135 (43%), Gaps = 11/135 (8%)
Query: 63 GISALRKETCNKSNMCESSKEAL-AENNLNLPKMAEKDG------CFQSGFNEETCLVKI 115
G+S L K++ K +C+ KE L A K++E D C + CL+ +
Sbjct: 577 GVSLLHKKSLEKEELCQRLKEQLDALEKETASKLSEMDSFNNQLKCGNMDDSVLQCLLSL 636
Query: 116 ITGLLEFEVYLEYLQNRFESSEEQARAVQMSTKVLIQFLQK-KAKNLDAITTPDPTTNAS 174
++ L + L+ L+ E+ Q A++ K+ L++ + K L+ + A+
Sbjct: 637 LSCLNNLFLLLKELR---ETYNTQQLALEQLYKIKRDKLKEIERKRLELMQKKKLEDEAA 693
Query: 175 LLTKLQAQNQWLQDM 189
K +N W +++
Sbjct: 694 RKAKQGKENLWKENL 708
>gi|194294525 intersectin 2 isoform 2 [Homo sapiens]
Length = 1249
Score = 29.3 bits (64), Expect = 2.6
Identities = 30/135 (22%), Positives = 59/135 (43%), Gaps = 11/135 (8%)
Query: 63 GISALRKETCNKSNMCESSKEAL-AENNLNLPKMAEKDG------CFQSGFNEETCLVKI 115
G+S L K++ K +C+ KE L A K++E D C + CL+ +
Sbjct: 577 GVSLLHKKSLEKEELCQRLKEQLDALEKETASKLSEMDSFNNQLKCGNMDDSVLQCLLSL 636
Query: 116 ITGLLEFEVYLEYLQNRFESSEEQARAVQMSTKVLIQFLQK-KAKNLDAITTPDPTTNAS 174
++ L + L+ L+ E+ Q A++ K+ L++ + K L+ + A+
Sbjct: 637 LSCLNNLFLLLKELR---ETYNTQQLALEQLYKIKRDKLKEIERKRLELMQKKKLEDEAA 693
Query: 175 LLTKLQAQNQWLQDM 189
K +N W +++
Sbjct: 694 RKAKQGKENLWKENL 708
>gi|9910266 kinesin family member 15 [Homo sapiens]
Length = 1388
Score = 29.3 bits (64), Expect = 2.6
Identities = 35/141 (24%), Positives = 58/141 (41%), Gaps = 20/141 (14%)
Query: 45 QPLTSSERIDKQIRYILDGISALRKETCNKSNMCESSKEALAENNLNLPKMAEKDGCFQS 104
+P+ ++ +D Q I+ L K S M +S K N A+K+ C +
Sbjct: 531 EPVKRAQEMDAQT------IAKLEKAFSEISGMEKSDK-----NQQGFSPKAQKEPCLFA 579
Query: 105 GFNEETCLVKIITGLLEFEVYLEYLQNRFESSEEQARAVQMSTKVLIQFLQKKAKNLDAI 164
N E K+ LL+ + L + +E +E R Q+ + +Q LQK NL+ +
Sbjct: 580 --NTE----KLKAQLLQIQTELNNSKQEYEEFKELTRKRQLELESELQSLQKANLNLENL 633
Query: 165 ---TTPDPTTNASLLTKLQAQ 182
T S L K+ A+
Sbjct: 634 LEATKACKRQEVSQLNKIHAE 654
>gi|106879206 chromosome 14 open reading frame 169 [Homo sapiens]
Length = 641
Score = 28.5 bits (62), Expect = 4.4
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 50 SERIDKQIRYILDGISALRKETCNKSNMCESSKEALAEN 88
S +I KQ+R ++ ++ALR +T N ES E+ A++
Sbjct: 36 SRKIRKQLRSVVSRMAALRTQTLPSENSEESRVESTADD 74
>gi|18677733 copine IV [Homo sapiens]
Length = 557
Score = 28.5 bits (62), Expect = 4.4
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 147 TKVLIQFLQKKAKNLDAITTPDPTTNASLLTKLQAQNQWLQDMTTHLI 194
TKV ++ K + DA++ PDP ++ K+Q+ QW + T +I
Sbjct: 24 TKVELRVACKGISDRDALSKPDP----CVILKMQSHGQWFEVDRTEVI 67
>gi|54607141 vacuolar protein sorting 13D isoform 2 [Homo sapiens]
Length = 4363
Score = 28.1 bits (61), Expect = 5.7
Identities = 16/77 (20%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 68 RKETCNKSNMCESSKEALAENNLNLPKMAEKDGCFQSGFNEETCLVKIITGLLEFEVYLE 127
+++ C M +++A++ + K+ K G + EE C ++ E ++ E
Sbjct: 333 QRKRCTWDFMLHRARDAVSYTDKYFNKL--KGGLLSTDDKEEMCRIEEEQSFEELKILRE 390
Query: 128 YLQNRFESSEEQARAVQ 144
+ +RF EE A +++
Sbjct: 391 LVHDRFHKQEELAESLR 407
>gi|54607139 vacuolar protein sorting 13D isoform 1 [Homo sapiens]
Length = 4388
Score = 28.1 bits (61), Expect = 5.7
Identities = 16/77 (20%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 68 RKETCNKSNMCESSKEALAENNLNLPKMAEKDGCFQSGFNEETCLVKIITGLLEFEVYLE 127
+++ C M +++A++ + K+ K G + EE C ++ E ++ E
Sbjct: 333 QRKRCTWDFMLHRARDAVSYTDKYFNKL--KGGLLSTDDKEEMCRIEEEQSFEELKILRE 390
Query: 128 YLQNRFESSEEQARAVQ 144
+ +RF EE A +++
Sbjct: 391 LVHDRFHKQEELAESLR 407
>gi|12667788 myosin, heavy polypeptide 9, non-muscle [Homo sapiens]
Length = 1960
Score = 27.7 bits (60), Expect = 7.5
Identities = 29/134 (21%), Positives = 53/134 (39%), Gaps = 4/134 (2%)
Query: 52 RIDKQIRYILDGISALRKETCNKSNMCESSKEALAENNLNLPKMA-EKDGCFQSGFNEET 110
R+ +++ +L + R+ CN + + LAE K A E+D +ET
Sbjct: 1417 RLQQELDDLLVDLDHQRQSACNLEKKQKKFDQLLAEEKTISAKYAEERDRAEAEAREKET 1476
Query: 111 ---CLVKIITGLLEFEVYLEYLQNRFESSEEQARAVQMSTKVLIQFLQKKAKNLDAITTP 167
L + + +E + LE L +F + E + + + L+K + L+
Sbjct: 1477 KALSLARALEEAMEQKAELERLNKQFRTEMEDLMSSKDDVGKSVHELEKSKRALEQQVEE 1536
Query: 168 DPTTNASLLTKLQA 181
T L +LQA
Sbjct: 1537 MKTQLEELEDELQA 1550
>gi|115648142 centrosomal protein 164kDa [Homo sapiens]
Length = 1460
Score = 27.7 bits (60), Expect = 7.5
Identities = 37/182 (20%), Positives = 78/182 (42%), Gaps = 31/182 (17%)
Query: 36 SKDVAAPHRQPLTSSE------RIDKQIRYILDGISALRKETCNKSNMCESSKEALAENN 89
S++ A H+Q + + + ++Q+R ILD + A + + ++ ++ ++ + L ++
Sbjct: 970 SEEATATHQQLEEAQKEHTHLLQSNQQLREILDELQARKLKLESQVDLLQAQSQQLQKHF 1029
Query: 90 LNLPKMAEKDGCFQSGFNEETCLVKIITGLLEFEVYLEYLQNRFESSEEQARAVQMSTKV 149
+L A+K Q E T + E ++++E L+ +++ TK
Sbjct: 1030 SSLEAEAQKK---QHLLREVTVEENNASPHFEPDLHIEDLRKSLGTNQ---------TKE 1077
Query: 150 LIQFLQKKAKNLDAITTPDPTTNASLLTKLQAQNQWLQDMTTHLILRSFKEFLQSSLRAL 209
+ L + ++L L L + N W + LRS KEFL R++
Sbjct: 1078 VSSSLSQSKEDL-------------YLDSLSSHNVWHLLSAEGVALRSAKEFLVQQTRSM 1124
Query: 210 RQ 211
R+
Sbjct: 1125 RR 1126
>gi|217416374 hypothetical protein LOC92749 [Homo sapiens]
Length = 740
Score = 27.7 bits (60), Expect = 7.5
Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 22/112 (19%)
Query: 79 ESSKEALAE--NNLNLPK-MAEKDG-------CFQSGFNEETCLVKIITGLLEFEVYLEY 128
E ++EA AE + L+LPK ++EK C +SGF E+ L+ ++ L + E YL
Sbjct: 468 EEAEEAAAEPESYLDLPKQISEKTTKRILMLLCDESGFLIESKLLSLLLPLEQNECYLLR 527
Query: 129 LQNRF-----ESSEEQARAVQMSTKVLIQFLQKKAKNLDAITTPDPTTNASL 175
L F ES ++ + V FL+ +A L + P + AS+
Sbjct: 528 LDAIFSALGIESEDDLYKLVNF-------FLKYRAHRLSSSLQIKPCSQASM 572
>gi|92091575 coiled-coil domain containing 57 [Homo sapiens]
Length = 915
Score = 27.7 bits (60), Expect = 7.5
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
Query: 119 LLEFEVYLEYLQNRFESSEEQARAVQMSTKVLIQFLQKK--------AKNLDAITTPDPT 170
LLEFE + ++ F + +S ++ ++ L K+ AK +++ +
Sbjct: 175 LLEFESKMRKREHEFRLQADNMSNTALSRELKVKLLHKELEALKEAGAKAAESLQRAE-A 233
Query: 171 TNASLLTKLQAQNQWLQDM 189
TNA L KLQ++ LQD+
Sbjct: 234 TNAELERKLQSRAGELQDL 252
>gi|55770862 thyroglobulin [Homo sapiens]
Length = 2768
Score = 27.3 bits (59), Expect = 9.8
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 10/66 (15%)
Query: 86 AENNLNLPKMAEKDGC----------FQSGFNEETCLVKIITGLLEFEVYLEYLQNRFES 135
+ ++ P+ A+KDG F+ E +K + LLE +L +LQ+
Sbjct: 528 SNSSTGTPEAAKKDGTMNKPTVGSFGFEINLQENQNALKFLASLLELPEFLLFLQHAISV 587
Query: 136 SEEQAR 141
E+ AR
Sbjct: 588 PEDVAR 593
>gi|239758139 PREDICTED: hypothetical protein [Homo sapiens]
Length = 66
Score = 27.3 bits (59), Expect = 9.8
Identities = 22/49 (44%), Positives = 24/49 (48%), Gaps = 9/49 (18%)
Query: 11 PVAFSLGLL---LVLPA--AFPAPVPPG----EDSKDVAAPHRQPLTSS 50
PV FSLGLL +V PA P P PPG S + HR P SS
Sbjct: 8 PVRFSLGLLVLHVVAPAKPEGPCPPPPGPLPYRPSPARHSGHRPPAASS 56
>gi|40353729 Ras and Rab interactor 3 [Homo sapiens]
Length = 985
Score = 27.3 bits (59), Expect = 9.8
Identities = 14/26 (53%), Positives = 14/26 (53%)
Query: 21 VLPAAFPAPVPPGEDSKDVAAPHRQP 46
VLPA PAP P S V APH P
Sbjct: 299 VLPALAPAPACPLPTSPPVPAPHVTP 324
>gi|190343010 SP110 nuclear body protein isoform a [Homo sapiens]
Length = 689
Score = 27.3 bits (59), Expect = 9.8
Identities = 15/45 (33%), Positives = 20/45 (44%)
Query: 11 PVAFSLGLLLVLPAAFPAPVPPGEDSKDVAAPHRQPLTSSERIDK 55
P + G L P A P P PP A +P TSS++ D+
Sbjct: 124 PTGLAEGSSLHTPLALPPPQPPQPSCSPCAPRVSEPGTSSQQSDE 168
>gi|190343008 SP110 nuclear body protein isoform b [Homo sapiens]
Length = 549
Score = 27.3 bits (59), Expect = 9.8
Identities = 15/45 (33%), Positives = 20/45 (44%)
Query: 11 PVAFSLGLLLVLPAAFPAPVPPGEDSKDVAAPHRQPLTSSERIDK 55
P + G L P A P P PP A +P TSS++ D+
Sbjct: 124 PTGLAEGSSLHTPLALPPPQPPQPSCSPCAPRVSEPGTSSQQSDE 168
>gi|190343006 SP110 nuclear body protein isoform c [Homo sapiens]
Length = 713
Score = 27.3 bits (59), Expect = 9.8
Identities = 15/45 (33%), Positives = 20/45 (44%)
Query: 11 PVAFSLGLLLVLPAAFPAPVPPGEDSKDVAAPHRQPLTSSERIDK 55
P + G L P A P P PP A +P TSS++ D+
Sbjct: 124 PTGLAEGSSLHTPLALPPPQPPQPSCSPCAPRVSEPGTSSQQSDE 168
>gi|7706527 A-kinase anchor protein 7 isoform gamma [Homo sapiens]
Length = 326
Score = 27.3 bits (59), Expect = 9.8
Identities = 29/94 (30%), Positives = 40/94 (42%), Gaps = 21/94 (22%)
Query: 50 SERIDKQIRYILDGISALRKETCNKSNMCESSKEALAENNLNLPKMAEKDGCFQSGFNEE 109
S R ++I Y +D S L+K+ N CESS + E N P AE
Sbjct: 227 SHRFGEEILYRIDLCSMLKKKQSNGYYHCESS-IVIGEKNGGEPDDAE------------ 273
Query: 110 TCLVKIITGLLEFEV------YLEYLQNRFESSE 137
LV++ L+E V YLE QN+ + E
Sbjct: 274 --LVRLSKRLVENAVLKAVQQYLEETQNKNKPGE 305
>gi|55749758 DIP2 disco-interacting protein 2 homolog B [Homo
sapiens]
Length = 1576
Score = 27.3 bits (59), Expect = 9.8
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 123 EVYLEYLQNRFESSEEQARAVQMSTKVLIQFLQKKAKNLDAITTPDPTTNAS 174
+++ E +Q +EQ A+ M TK F+Q A DA T PD T++AS
Sbjct: 101 DIHTEAVQAALAKHKEQKMALPMPTKRRSTFVQSPA---DACTPPD-TSSAS 148
>gi|14270499 protocadherin gamma subfamily B, 4 isoform 2 precursor
[Homo sapiens]
Length = 803
Score = 27.3 bits (59), Expect = 9.8
Identities = 29/101 (28%), Positives = 39/101 (38%), Gaps = 20/101 (19%)
Query: 11 PVAFSLGLLLVLPAA-------FPAPVPPGEDSKDVAA---------PHRQPLTSSER-- 52
PV F L L PA P +P G ++A P R+ SSE+
Sbjct: 15 PVLFLFLLSLFCPALCEQIRYRIPEEMPKGSVVGNLATDLGFSVQELPTRKLRVSSEKPY 74
Query: 53 --IDKQIRYILDGISALRKETCNKSNMCESSKEALAENNLN 91
+ + +L R+E C K C EA+AEN LN
Sbjct: 75 FTVSAESGELLVSSRLDREEICGKKPACALEFEAVAENPLN 115
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.130 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,590,444
Number of Sequences: 37866
Number of extensions: 319930
Number of successful extensions: 1424
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1412
Number of HSP's gapped (non-prelim): 38
length of query: 212
length of database: 18,247,518
effective HSP length: 98
effective length of query: 114
effective length of database: 14,536,650
effective search space: 1657178100
effective search space used: 1657178100
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.