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Search of human proteins with 10257429
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|10257429 immunity-related GTPase family, cinema [Homo
sapiens]
(463 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|10257429 immunity-related GTPase family, cinema [Homo sapiens] 912 0.0
gi|56090582 immunity-related GTPase family, Q [Homo sapiens] 98 1e-20
gi|224809576 immunity-related GTPase family, M [Homo sapiens] 94 3e-19
gi|157502201 ATP-binding cassette, sub-family C, member 4 isofor... 35 0.14
gi|90193617 nuclear matrix transcription factor 4 isoform b [Hom... 32 1.2
gi|90193615 nuclear matrix transcription factor 4 isoform b [Hom... 32 1.2
gi|27436953 ATP-binding cassette, sub-family A, member 6 [Homo s... 32 1.6
gi|113204604 aristaless-like homeobox 3 [Homo sapiens] 31 2.1
gi|122937398 dynein, cytoplasmic 2, heavy chain 1 [Homo sapiens] 31 2.1
gi|4557481 ATP-binding cassette, sub-family C (CFTR/MRP), member... 31 2.7
gi|241666479 hypothetical protein LOC79363 [Homo sapiens] 31 2.7
gi|239757729 PREDICTED: hypothetical protein [Homo sapiens] 31 2.7
gi|239752222 PREDICTED: hypothetical protein [Homo sapiens] 31 2.7
gi|239746743 PREDICTED: hypothetical protein [Homo sapiens] 31 2.7
gi|153792144 ATP-binding cassette, sub-family A, member 10 [Homo... 31 2.7
gi|118421089 chromodomain helicase DNA binding protein 2 isoform... 31 2.7
gi|190343023 ATP-binding cassette, sub-family C, member 6 isofor... 30 3.5
gi|239756495 PREDICTED: hypothetical protein [Homo sapiens] 30 3.5
gi|6005701 ATP-binding cassette, sub-family A member 8 [Homo sap... 30 4.6
gi|224465235 euchromatic histone-lysine N-methyltransferase 1 is... 30 4.6
gi|224465233 euchromatic histone-lysine N-methyltransferase 1 is... 30 4.6
gi|205277394 coenzyme A synthase isoform c [Homo sapiens] 30 4.6
gi|110227607 coenzyme A synthase isoform b [Homo sapiens] 30 4.6
gi|110227605 coenzyme A synthase isoform a [Homo sapiens] 30 4.6
gi|110227601 coenzyme A synthase isoform a [Homo sapiens] 30 4.6
gi|110227603 coenzyme A synthase isoform a [Homo sapiens] 30 4.6
gi|42476169 Paf1, RNA polymerase II associated factor, homolog [... 30 4.6
gi|62177129 Nedd4 binding protein 3 [Homo sapiens] 30 4.6
gi|149944486 hypothetical protein LOC389643 [Homo sapiens] 30 4.6
gi|7661962 centaurin, gamma 1 isoform PIKE-S [Homo sapiens] 30 6.0
>gi|10257429 immunity-related GTPase family, cinema [Homo sapiens]
Length = 463
Score = 912 bits (2356), Expect = 0.0
Identities = 463/463 (100%), Positives = 463/463 (100%)
Query: 1 MATSKLPVVPGEEENTILMAKERLEALRTAFESGDLPQAASHLQELLASTESIRLEVGVT 60
MATSKLPVVPGEEENTILMAKERLEALRTAFESGDLPQAASHLQELLASTESIRLEVGVT
Sbjct: 1 MATSKLPVVPGEEENTILMAKERLEALRTAFESGDLPQAASHLQELLASTESIRLEVGVT 60
Query: 61 GESGAGKSSLINALRGLEAEDPGAALTGVMETTMQPSPYPHPQFPDVTLWDLPGAGSPGC 120
GESGAGKSSLINALRGLEAEDPGAALTGVMETTMQPSPYPHPQFPDVTLWDLPGAGSPGC
Sbjct: 61 GESGAGKSSLINALRGLEAEDPGAALTGVMETTMQPSPYPHPQFPDVTLWDLPGAGSPGC 120
Query: 121 PADKYLKQVDFSRYDFFLLVSPRRCGAVETRLAAEILCQGKKFYFVRTKVDEDLAATRTQ 180
PADKYLKQVDFSRYDFFLLVSPRRCGAVETRLAAEILCQGKKFYFVRTKVDEDLAATRTQ
Sbjct: 121 PADKYLKQVDFSRYDFFLLVSPRRCGAVETRLAAEILCQGKKFYFVRTKVDEDLAATRTQ 180
Query: 181 RPSGFREAAVLQEIRDHCAERLREAGVADPRIFLVSNLSPARYDFPTLVSTWEHDLPSHR 240
RPSGFREAAVLQEIRDHCAERLREAGVADPRIFLVSNLSPARYDFPTLVSTWEHDLPSHR
Sbjct: 181 RPSGFREAAVLQEIRDHCAERLREAGVADPRIFLVSNLSPARYDFPTLVSTWEHDLPSHR 240
Query: 241 RHAGLLSLPDISLEALQKKKAMLQEQVLKTALVLGVIQALPVPGLAAAYDDALLIHSLRG 300
RHAGLLSLPDISLEALQKKKAMLQEQVLKTALVLGVIQALPVPGLAAAYDDALLIHSLRG
Sbjct: 241 RHAGLLSLPDISLEALQKKKAMLQEQVLKTALVLGVIQALPVPGLAAAYDDALLIHSLRG 300
Query: 301 YHRSFGLDDDSLAKLAEQVGKQAGDLRSVIRSPLANEVSPETVLRLYSQSSDGAMRVARA 360
YHRSFGLDDDSLAKLAEQVGKQAGDLRSVIRSPLANEVSPETVLRLYSQSSDGAMRVARA
Sbjct: 301 YHRSFGLDDDSLAKLAEQVGKQAGDLRSVIRSPLANEVSPETVLRLYSQSSDGAMRVARA 360
Query: 361 FERGIPVFGTLVAGGISFGAVYTMLQGCLNEMAEDAQRVRIKALEDDEPQPEVSLEVASD 420
FERGIPVFGTLVAGGISFGAVYTMLQGCLNEMAEDAQRVRIKALEDDEPQPEVSLEVASD
Sbjct: 361 FERGIPVFGTLVAGGISFGAVYTMLQGCLNEMAEDAQRVRIKALEDDEPQPEVSLEVASD 420
Query: 421 NGVEKGGSGEGGGEEAPLSTCRKLGLLLKYILDSWKKHDSEEK 463
NGVEKGGSGEGGGEEAPLSTCRKLGLLLKYILDSWKKHDSEEK
Sbjct: 421 NGVEKGGSGEGGGEEAPLSTCRKLGLLLKYILDSWKKHDSEEK 463
>gi|56090582 immunity-related GTPase family, Q [Homo sapiens]
Length = 623
Score = 98.2 bits (243), Expect = 1e-20
Identities = 118/451 (26%), Positives = 181/451 (40%), Gaps = 72/451 (15%)
Query: 8 VVPGEEENTILMAKERLEALRTAFESGDLPQAASHLQELLASTESIRLEVGVTGESGAGK 67
++P ++ ++ LEA+R AFE+G L A S ++ L S RL++ V G++ G
Sbjct: 178 LLPPAQDGFEVLGAAELEAVREAFETGGLEAALSWVRSGLERLGSARLDLAVAGKADVG- 236
Query: 68 SSLINALRGLEAEDPGAALTGVMETTMQPSPYPHPQFPDVTLWDLPGAGSPGCPADKYLK 127
+++ L GL+ DPGAA V P+P+P P+ P+V LW +P G G A
Sbjct: 237 -LVVDMLLGLDPGDPGAAPASV---PTAPTPFPAPERPNVVLWTVP-LGHTG-TATTAAA 290
Query: 128 QVDFSRYDFFLLVSPRRCGAVETRLAAEILCQGKKFYFVRTKVD----EDLAATRTQRPS 183
+ YD +LV+P + +L VRT + E L + + P
Sbjct: 291 ASHPTHYDALILVTPGAPTEKDWAQVQALLLPDAPLVCVRTDGEGEDPECLGEGKMENPK 350
Query: 184 G--FREAA------VLQEIRDHCAERLREAG----------------------------- 206
G + A L + R+ C+ ++AG
Sbjct: 351 GESLKNAGGGGLENALSKGREKCSAGSQKAGSGEGPGKAGSEGLQQVVGMKKSGGGDSER 410
Query: 207 ---------------VADPRIFLVSNLSPARYDFPTLVSTWEHDLPSHRRHAGLLSLPDI 251
A P +F L P P L LP + A LL+LP
Sbjct: 411 AAALSPEDETWEVLEEAPPPVF---PLRPG--GLPGLCEWLRRALPPAQAGALLLALPPA 465
Query: 252 SLEALQKKKAMLQEQVLKTALVLGV-IQALPVPGLAAAYDDALLIHSLRGYHRSFGLDDD 310
S A + K A L+ + AL+ + A P+PGL A D ALL L + R GL+
Sbjct: 466 SPSAARTKAAALRAGAWRPALLASLAAAAAPLPGLGWACDVALLRGQLAEWRRGLGLEPT 525
Query: 311 SLAKLAEQVGKQAGDLRSVIRSPLANEVSPETVLRLYSQSSDGAMRVAR--AFERGIPVF 368
+LA+ +G +G+L + P E RL + + +G A A P
Sbjct: 526 ALARRERALGLASGELAARAHFP-GPVTRAEVEARLGAWAGEGTAGGAALGALSFLWPAG 584
Query: 369 GTLVAGGISFGAVYTMLQGCLNEMAEDAQRV 399
G GG+ + A + +L L+EM DA+ V
Sbjct: 585 GAAATGGLGYRAAHGVLLQALDEMRADAEAV 615
>gi|224809576 immunity-related GTPase family, M [Homo sapiens]
Length = 181
Score = 94.0 bits (232), Expect = 3e-19
Identities = 58/180 (32%), Positives = 93/180 (51%), Gaps = 8/180 (4%)
Query: 30 AFESGDLPQAASHLQELLASTESIRLEVGVTGESGAGKSSLINALRGLEAEDPGAALTGV 89
A G+LP+ S+++E L + + + G+SG G S+ I+ALR E + T +
Sbjct: 9 ASADGNLPEVISNIKETLKIVSRTPVNITMAGDSGNGMSTFISALRNTGHEGKASPPTEL 68
Query: 90 METTMQPSPYPHPQFPDVTLWDLPGAGSPGCPADKYLKQVDFSRYDFFLLVSPRRCGAVE 149
++ T + + Y F +V LWDLPG GS + YL ++ F+RYD F++V+ +
Sbjct: 69 VKATQRCASYFSSHFSNVVLWDLPGTGSATTTLENYLMEMQFNRYD-FIMVASAQFSMNH 127
Query: 150 TRLAAEILCQGKKFYFVRTKVDEDLAATRTQRPSGFREAAVLQEIRDHCAERLREAGVAD 209
LA GKKFY V TK+D DL+ +G L +IR++ E L++ V +
Sbjct: 128 VMLAKTAEDMGKKFYIVWTKLDMDLS-------TGALPEVQLLQIRENVLENLQKERVCE 180
>gi|157502201 ATP-binding cassette, sub-family C, member 4 isoform 1
[Homo sapiens]
Length = 1325
Score = 35.0 bits (79), Expect = 0.14
Identities = 19/38 (50%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
Query: 37 PQAASHLQELLASTESIRLEVGVTGESGAGKSSLINAL 74
P HL L+ S E +VG+ G +GAGKSSLI+AL
Sbjct: 1055 PLVLKHLTALIKSQE----KVGIVGRTGAGKSSLISAL 1088
>gi|90193617 nuclear matrix transcription factor 4 isoform b [Homo
sapiens]
Length = 500
Score = 32.0 bits (71), Expect = 1.2
Identities = 28/83 (33%), Positives = 35/83 (42%), Gaps = 13/83 (15%)
Query: 365 IPVFGTLVAGGISFGAVYTMLQGCLNEMAEDAQRVRIKA----------LEDDEPQPEVS 414
+P G + AG G V T G L A AQ I A + + P++S
Sbjct: 93 VPSTGLMTAGP---GLVITSPSGSLVTTASSAQTFPISAPMIVSALPPGSQALQVVPDLS 149
Query: 415 LEVASDNGVEKGGSGEGGGEEAP 437
+VAS E GG G GGG AP
Sbjct: 150 KKVASTLTEEGGGGGGGGGSVAP 172
>gi|90193615 nuclear matrix transcription factor 4 isoform b [Homo
sapiens]
Length = 500
Score = 32.0 bits (71), Expect = 1.2
Identities = 28/83 (33%), Positives = 35/83 (42%), Gaps = 13/83 (15%)
Query: 365 IPVFGTLVAGGISFGAVYTMLQGCLNEMAEDAQRVRIKA----------LEDDEPQPEVS 414
+P G + AG G V T G L A AQ I A + + P++S
Sbjct: 93 VPSTGLMTAGP---GLVITSPSGSLVTTASSAQTFPISAPMIVSALPPGSQALQVVPDLS 149
Query: 415 LEVASDNGVEKGGSGEGGGEEAP 437
+VAS E GG G GGG AP
Sbjct: 150 KKVASTLTEEGGGGGGGGGSVAP 172
>gi|27436953 ATP-binding cassette, sub-family A, member 6 [Homo
sapiens]
Length = 1617
Score = 31.6 bits (70), Expect = 1.6
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 59 VTGESGAGKSSLINALRGLEAEDPGA 84
+ G SGAGKSSL+N L GL G+
Sbjct: 512 ILGHSGAGKSSLLNILNGLSVPTEGS 537
>gi|113204604 aristaless-like homeobox 3 [Homo sapiens]
Length = 343
Score = 31.2 bits (69), Expect = 2.1
Identities = 32/135 (23%), Positives = 53/135 (39%), Gaps = 19/135 (14%)
Query: 1 MATSKLPVVPG-------------EEENTILMAKERLEALRTAFESGDLPQAASHLQELL 47
+A+ LP+ PG + N + +LE L F+ P + ++L
Sbjct: 129 LASLHLPLSPGLPDSMELAKNKSKKRRNRTTFSTFQLEELEKVFQKTHYPDVYAR-EQLA 187
Query: 48 ASTESIRLEVGVTGESGAGKSSLINALRGL-EAEDPGAALTGVMETTMQPSPYPHPQFPD 106
T+ V V ++ K + E +P T + ++ P HPQ +
Sbjct: 188 LRTDLTEARVQVWFQNRRAKWRKRERYGKIQEGRNP---FTAAYDISVLPRTDSHPQLQN 244
Query: 107 VTLWDLPGAGSPGCP 121
+LW PG+GSPG P
Sbjct: 245 -SLWASPGSGSPGGP 258
>gi|122937398 dynein, cytoplasmic 2, heavy chain 1 [Homo sapiens]
Length = 4314
Score = 31.2 bits (69), Expect = 2.1
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 10/82 (12%)
Query: 26 ALRTAFESGDLPQAASHLQELLASTESI--RLEVGVTGESGAGKSSLINALRGLEAEDPG 83
AL+ FE + + +++ L E + R+ V + G SGAGKS+L LR
Sbjct: 1942 ALKQVFEEANYEIIPNQIKKALELYEQLCQRMGVVIVGPSGAGKSTLWRMLRA------A 1995
Query: 84 AALTG--VMETTMQPSPYPHPQ 103
TG V + TM P P Q
Sbjct: 1996 LCKTGKVVKQYTMNPKAMPRYQ 2017
>gi|4557481 ATP-binding cassette, sub-family C (CFTR/MRP), member 2
[Homo sapiens]
Length = 1545
Score = 30.8 bits (68), Expect = 2.7
Identities = 18/35 (51%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 56 EVGVTGESGAGKSSLINAL-RGLEAEDPGAALTGV 89
++GV G +GAGKSSL N L R LEA + GV
Sbjct: 1329 KIGVVGRTGAGKSSLTNCLFRILEAAGGQIIIDGV 1363
>gi|241666479 hypothetical protein LOC79363 [Homo sapiens]
Length = 258
Score = 30.8 bits (68), Expect = 2.7
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 49 STESIRLEVGVTGESGAGKSSLINALRGLEAEDPGAALTGVMETTM 94
S ++ ++ V+G+SG GK++L+ L GLE TG+ T +
Sbjct: 50 SIDTASYKIFVSGKSGVGKTALVAKLAGLEVPVVHHETTGIQTTVV 95
>gi|239757729 PREDICTED: hypothetical protein [Homo sapiens]
Length = 329
Score = 30.8 bits (68), Expect = 2.7
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 11/78 (14%)
Query: 58 GVTGESGAGK--SSLINALRGLEAEDPG---AALTGVMETTMQPSPYPHPQFPDVTLWDL 112
G+ E+G + S L +G+ A G ++L E T P YP P + W+
Sbjct: 207 GLIEETGPARQISDLCEVSQGVGAFRAGGCPSSLASSREQTHSPHLYPSPSSSSPSSWEA 266
Query: 113 PGA------GSPGCPADK 124
P A G PG PA K
Sbjct: 267 PPANSVTPRGRPGIPAHK 284
>gi|239752222 PREDICTED: hypothetical protein [Homo sapiens]
Length = 329
Score = 30.8 bits (68), Expect = 2.7
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 11/78 (14%)
Query: 58 GVTGESGAGK--SSLINALRGLEAEDPG---AALTGVMETTMQPSPYPHPQFPDVTLWDL 112
G+ E+G + S L +G+ A G ++L E T P YP P + W+
Sbjct: 207 GLIEETGPARQISDLCEVSQGVGAFRAGGCPSSLASSREQTHSPHLYPSPSSSSPSSWEA 266
Query: 113 PGA------GSPGCPADK 124
P A G PG PA K
Sbjct: 267 PPANSVTPRGRPGIPAHK 284
>gi|239746743 PREDICTED: hypothetical protein [Homo sapiens]
Length = 329
Score = 30.8 bits (68), Expect = 2.7
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 11/78 (14%)
Query: 58 GVTGESGAGK--SSLINALRGLEAEDPG---AALTGVMETTMQPSPYPHPQFPDVTLWDL 112
G+ E+G + S L +G+ A G ++L E T P YP P + W+
Sbjct: 207 GLIEETGPARQISDLCEVSQGVGAFRAGGCPSSLASSREQTHSPHLYPSPSSSSPSSWEA 266
Query: 113 PGA------GSPGCPADK 124
P A G PG PA K
Sbjct: 267 PPANSVTPRGRPGIPAHK 284
>gi|153792144 ATP-binding cassette, sub-family A, member 10 [Homo
sapiens]
Length = 1543
Score = 30.8 bits (68), Expect = 2.7
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 59 VTGESGAGKSSLINALRGLEAEDPGAA 85
+ G +GAGKS+L+N L GL G+A
Sbjct: 425 ILGHNGAGKSTLLNILSGLSVSTEGSA 451
>gi|118421089 chromodomain helicase DNA binding protein 2 isoform 1
[Homo sapiens]
Length = 1828
Score = 30.8 bits (68), Expect = 2.7
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Query: 7 PVVPGEEEN------TILMAKERLEALRTAFESGDLPQAASHLQELLASTESIRLEVG 58
PV GE+E+ T + KER+ ++ A + D P ++QE L T + L++G
Sbjct: 1453 PVPIGEDEDDDLDQETFSICKERMRPVKKALKQLDKPDKGLNVQEQLEHTRNCLLKIG 1510
>gi|190343023 ATP-binding cassette, sub-family C, member 6 isoform 1
[Homo sapiens]
Length = 1503
Score = 30.4 bits (67), Expect = 3.5
Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 56 EVGVTGESGAGKSSLINALRGL-EAEDPGAALTGV 89
+VG+ G +GAGKSSL + L L EA + G + GV
Sbjct: 1294 KVGIVGRTGAGKSSLASGLLRLQEAAEGGIWIDGV 1328
>gi|239756495 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1312
Score = 30.4 bits (67), Expect = 3.5
Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 56 EVGVTGESGAGKSSLINALRGL-EAEDPGAALTGV 89
+VG+ G +GAGKSSL + L L EA + G + GV
Sbjct: 1103 KVGIVGRTGAGKSSLASGLLRLQEAAEGGIWIDGV 1137
>gi|6005701 ATP-binding cassette, sub-family A member 8 [Homo
sapiens]
Length = 1581
Score = 30.0 bits (66), Expect = 4.6
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 59 VTGESGAGKSSLINALRGLEAEDPGA 84
+ G SGAGKS+L+N L GL G+
Sbjct: 514 ILGHSGAGKSTLLNILSGLSVPTKGS 539
>gi|224465235 euchromatic histone-lysine N-methyltransferase 1
isoform 2 [Homo sapiens]
Length = 808
Score = 30.0 bits (66), Expect = 4.6
Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
Query: 3 TSKLPVVPGEEENTILMAKERLEALRTA----FESGDLPQAASHLQELLASTESIRLEVG 58
TS + VPG+E+ + L + A E L AASH+ E T L
Sbjct: 648 TSTVTPVPGQEKGSALEGRADTTTGSAAGPPLSEDDKLQGAASHVPEGFDPTGPAGLGRP 707
Query: 59 VTGES-GAGKSSLINALRGLEAEDP 82
G S G GK +L +AL L++E P
Sbjct: 708 TPGLSQGPGKETLESALIALDSEKP 732
>gi|224465233 euchromatic histone-lysine N-methyltransferase 1
isoform 1 [Homo sapiens]
Length = 1298
Score = 30.0 bits (66), Expect = 4.6
Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
Query: 3 TSKLPVVPGEEENTILMAKERLEALRTA----FESGDLPQAASHLQELLASTESIRLEVG 58
TS + VPG+E+ + L + A E L AASH+ E T L
Sbjct: 648 TSTVTPVPGQEKGSALEGRADTTTGSAAGPPLSEDDKLQGAASHVPEGFDPTGPAGLGRP 707
Query: 59 VTGES-GAGKSSLINALRGLEAEDP 82
G S G GK +L +AL L++E P
Sbjct: 708 TPGLSQGPGKETLESALIALDSEKP 732
>gi|205277394 coenzyme A synthase isoform c [Homo sapiens]
Length = 593
Score = 30.0 bits (66), Expect = 4.6
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 57 VGVTGESGAGKSSLINALRGLEA 79
+G+TG SG+GKSS+ L+GL A
Sbjct: 390 IGLTGISGSGKSSIAQRLKGLGA 412
>gi|110227607 coenzyme A synthase isoform b [Homo sapiens]
Length = 269
Score = 30.0 bits (66), Expect = 4.6
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 57 VGVTGESGAGKSSLINALRGLEA 79
+G+TG SG+GKSS+ L+GL A
Sbjct: 66 IGLTGISGSGKSSIAQRLKGLGA 88
>gi|110227605 coenzyme A synthase isoform a [Homo sapiens]
Length = 564
Score = 30.0 bits (66), Expect = 4.6
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 57 VGVTGESGAGKSSLINALRGLEA 79
+G+TG SG+GKSS+ L+GL A
Sbjct: 361 IGLTGISGSGKSSIAQRLKGLGA 383
>gi|110227601 coenzyme A synthase isoform a [Homo sapiens]
Length = 564
Score = 30.0 bits (66), Expect = 4.6
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 57 VGVTGESGAGKSSLINALRGLEA 79
+G+TG SG+GKSS+ L+GL A
Sbjct: 361 IGLTGISGSGKSSIAQRLKGLGA 383
>gi|110227603 coenzyme A synthase isoform a [Homo sapiens]
Length = 564
Score = 30.0 bits (66), Expect = 4.6
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 57 VGVTGESGAGKSSLINALRGLEA 79
+G+TG SG+GKSS+ L+GL A
Sbjct: 361 IGLTGISGSGKSSIAQRLKGLGA 383
>gi|42476169 Paf1, RNA polymerase II associated factor, homolog
[Homo sapiens]
Length = 531
Score = 30.0 bits (66), Expect = 4.6
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 8/55 (14%)
Query: 389 LNEMAEDAQRVRIKALEDDEPQPEVSLEV--------ASDNGVEKGGSGEGGGEE 435
+NE +AQ R LE+ EP+ E E+ SD EKG S E G E
Sbjct: 356 MNEKELEAQEARKAQLENHEPEEEEEEEMETEEKEAGGSDEEQEKGSSSEKEGSE 410
>gi|62177129 Nedd4 binding protein 3 [Homo sapiens]
Length = 544
Score = 30.0 bits (66), Expect = 4.6
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 383 TMLQGCLNE-MAEDAQRVR----IKALEDDEPQPEVSLEVASDNGVEKGGSGEGGGEEA 436
T L+G + A+DA+ VR +++L++ P+ E +D+ +G GE GG EA
Sbjct: 403 TQLRGSRAQAQAQDAELVRLREAVRSLQEQAPREEAPGSCETDDCKSRGLLGEAGGSEA 461
>gi|149944486 hypothetical protein LOC389643 [Homo sapiens]
Length = 796
Score = 30.0 bits (66), Expect = 4.6
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 27 LRTAFESGDLPQAASHL-QELLASTESIRLE---VGVTGESGAGKSSLINAL 74
+++ F +P +L LLA E ++ + + G +GAGKSSLINA+
Sbjct: 69 IQSVFLDDSIPNGVKYLINRLLALIEKPTVDPIYIALFGSTGAGKSSLINAI 120
>gi|7661962 centaurin, gamma 1 isoform PIKE-S [Homo sapiens]
Length = 836
Score = 29.6 bits (65), Expect = 6.0
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 20/71 (28%)
Query: 19 MAKERLEALRTAFESGDLPQAASHLQELLASTESIR-----------------LEVGVTG 61
+AK+ L LR E D P+ +Q AS +SIR L +GV G
Sbjct: 21 VAKQALNRLRKLAERVDDPELQDSIQ---ASLDSIREAVINSQEWTLSRSIPELRLGVLG 77
Query: 62 ESGAGKSSLIN 72
++ +GKSSLI+
Sbjct: 78 DARSGKSSLIH 88
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.134 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,256,198
Number of Sequences: 37866
Number of extensions: 858543
Number of successful extensions: 3249
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 3213
Number of HSP's gapped (non-prelim): 61
length of query: 463
length of database: 18,247,518
effective HSP length: 106
effective length of query: 357
effective length of database: 14,233,722
effective search space: 5081438754
effective search space used: 5081438754
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.