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Search of human proteins with 10190682
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|10190682 chromobox homolog 8 [Homo sapiens]
(389 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|10190682 chromobox homolog 8 [Homo sapiens] 778 0.0
gi|46852392 chromobox homolog 6 [Homo sapiens] 182 4e-46
gi|55770830 chromobox homolog 4 [Homo sapiens] 124 1e-28
gi|61743963 chromobox homolog 2 isoform 1 [Homo sapiens] 124 1e-28
gi|28372505 chromobox homolog 7 [Homo sapiens] 118 1e-26
gi|14249190 chromobox homolog 2 isoform 2 [Homo sapiens] 108 1e-23
gi|55741709 RNA binding motif protein 25 [Homo sapiens] 71 2e-12
gi|14670268 RD RNA-binding protein [Homo sapiens] 70 4e-12
gi|125988409 RED protein [Homo sapiens] 69 9e-12
gi|188035910 heterochromatin protein 1-alpha [Homo sapiens] 63 4e-10
gi|188035908 heterochromatin protein 1-alpha [Homo sapiens] 63 4e-10
gi|6912292 heterochromatin protein 1-alpha [Homo sapiens] 63 4e-10
gi|116008442 zinc finger CCCH-type containing 13 [Homo sapiens] 63 5e-10
gi|239747134 PREDICTED: hypothetical protein XP_002343921 [Homo ... 62 9e-10
gi|201023341 FIP1 like 1 isoform 3 [Homo sapiens] 62 9e-10
gi|201023339 FIP1 like 1 isoform 2 [Homo sapiens] 62 9e-10
gi|40254978 FIP1 like 1 isoform 1 [Homo sapiens] 62 9e-10
gi|239747891 PREDICTED: hypothetical protein [Homo sapiens] 62 1e-09
gi|197333879 genetic suppressor element 1 isoform 2 [Homo sapiens] 62 1e-09
gi|44955926 genetic suppressor element 1 isoform 1 [Homo sapiens] 62 1e-09
gi|15082258 chromobox homolog 3 [Homo sapiens] 60 3e-09
gi|20544151 chromobox homolog 3 [Homo sapiens] 60 3e-09
gi|239747174 PREDICTED: hypothetical protein XP_002343931, parti... 60 4e-09
gi|41327773 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Homo sapi... 59 1e-08
gi|94536805 splicing factor YT521-B isoform 2 [Homo sapiens] 59 1e-08
gi|72534750 splicing factor YT521-B isoform 1 [Homo sapiens] 59 1e-08
gi|5803076 heterochromatin protein 1-beta [Homo sapiens] 58 1e-08
gi|187960037 heterochromatin protein 1-beta [Homo sapiens] 58 1e-08
gi|71044479 death inducer-obliterator 1 isoform c [Homo sapiens] 58 2e-08
gi|169167715 PREDICTED: hypothetical protein [Homo sapiens] 57 3e-08
>gi|10190682 chromobox homolog 8 [Homo sapiens]
Length = 389
Score = 778 bits (2008), Expect = 0.0
Identities = 389/389 (100%), Positives = 389/389 (100%)
Query: 1 MELSAVGERVFAAEALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENILDARLLAAFEER 60
MELSAVGERVFAAEALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENILDARLLAAFEER
Sbjct: 1 MELSAVGERVFAAEALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENILDARLLAAFEER 60
Query: 61 EREMELYGPKKRGPKPKTFLLKAQAKAKAKTYEFRSDSARGIRIPYPGRSPQDLASTSRA 120
EREMELYGPKKRGPKPKTFLLKAQAKAKAKTYEFRSDSARGIRIPYPGRSPQDLASTSRA
Sbjct: 61 EREMELYGPKKRGPKPKTFLLKAQAKAKAKTYEFRSDSARGIRIPYPGRSPQDLASTSRA 120
Query: 121 REGLRNMGLSPPASSTSTSSTCRAEAPRDRDRDRDRDRERDRERERERERERERERERER 180
REGLRNMGLSPPASSTSTSSTCRAEAPRDRDRDRDRDRERDRERERERERERERERERER
Sbjct: 121 REGLRNMGLSPPASSTSTSSTCRAEAPRDRDRDRDRDRERDRERERERERERERERERER 180
Query: 181 GTSRVDDKPSSPGDSSKKRGPKPRKELPDPSQRPLGEPSAGLGEYLKGRKLDDTPSGAGK 240
GTSRVDDKPSSPGDSSKKRGPKPRKELPDPSQRPLGEPSAGLGEYLKGRKLDDTPSGAGK
Sbjct: 181 GTSRVDDKPSSPGDSSKKRGPKPRKELPDPSQRPLGEPSAGLGEYLKGRKLDDTPSGAGK 240
Query: 241 FPAGHSVIQLARRQDSDLVQCGVTSPSSAEATGKLAVDTFPARVIKHRAAFLEAKGQGAL 300
FPAGHSVIQLARRQDSDLVQCGVTSPSSAEATGKLAVDTFPARVIKHRAAFLEAKGQGAL
Sbjct: 241 FPAGHSVIQLARRQDSDLVQCGVTSPSSAEATGKLAVDTFPARVIKHRAAFLEAKGQGAL 300
Query: 301 DPNGTRVRHGSGPPSSGGGLYRDMGAQGGRPSLIARIPVARILGDPEEESWSPSLTNLEK 360
DPNGTRVRHGSGPPSSGGGLYRDMGAQGGRPSLIARIPVARILGDPEEESWSPSLTNLEK
Sbjct: 301 DPNGTRVRHGSGPPSSGGGLYRDMGAQGGRPSLIARIPVARILGDPEEESWSPSLTNLEK 360
Query: 361 VVVTDVTSNFLTVTIKESNTDQGFFKEKR 389
VVVTDVTSNFLTVTIKESNTDQGFFKEKR
Sbjct: 361 VVVTDVTSNFLTVTIKESNTDQGFFKEKR 389
>gi|46852392 chromobox homolog 6 [Homo sapiens]
Length = 412
Score = 182 bits (462), Expect = 4e-46
Identities = 153/419 (36%), Positives = 200/419 (47%), Gaps = 59/419 (14%)
Query: 1 MELSAVGERVFAAEALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENILDARLLAAFEER 60
MELSAVGERVFAAE+++KRRIRKGR+EYLVKWKGW+ KYSTWEPEENILD+RL+AAFE++
Sbjct: 1 MELSAVGERVFAAESIIKRRIRKGRIEYLVKWKGWAIKYSTWEPEENILDSRLIAAFEQK 60
Query: 61 EREMELYGPKKRGPKPKTFLLKAQAKAKAKTYEFRSDSARGIRIPYPGRSPQ--DLASTS 118
ERE ELYGPKKRGPKPKTFLLKA+A+A+A SD ++ SP+ A+
Sbjct: 61 ERERELYGPKKRGPKPKTFLLKARAQAEALRI---SDVHFSVKPSASASSPKLHSSAAVH 117
Query: 119 RAREGLR------------------NMGLSPPAS--STSTSSTCRAEAPRDRDRDRD--- 155
R ++ +R + GL PP S S + R PR+ R+R
Sbjct: 118 RLKKDIRRCHRMSRRPLPRPDPQGGSPGLRPPISPFSETVRIINRKVKPREPKRNRIILN 177
Query: 156 -RDRERDRERERERERERERERERERGTSRVDDKPSSPGDSSKKRGPKPRK----ELPDP 210
+ ++ + R + +RV K +S + + K L P
Sbjct: 178 LKVIDKGAGGGGAGQGAGALARPKVPSRNRVIGKSKKFSESVLRTQIRHMKFGAFALYKP 237
Query: 211 SQRPLGEPSAGLGEYLKGRKLDDTPSGAGKFPAGHSVIQLARRQDSDLVQCGVTSPSSAE 270
PL PS G K + + G G A + AR S C +P S++
Sbjct: 238 PPAPLVAPSPG--------KAEASAPGPGLLLAAPAAPYDARSSGSS--GCPSPTPQSSD 287
Query: 271 ATGKLAVDTFPARVIKHRAAFLEAKGQGALDPNGTRVRHGSGPPSSGGGLYR---DMGAQ 327
D P +++ E A V S PP S R ++ A
Sbjct: 288 P------DDTPPKLLP------ETVSPSAPSWREPEVLDLSLPPESAATSKRAPPEVTAA 335
Query: 328 GGRPSLIARIPVARILGDPEEESWSPSLTNLEKVVVTDVTSNFLTVTIKESNTDQGFFK 386
G A P A +PE W P ++ VVVTDVTSN LTVTIKE + F K
Sbjct: 336 AGPAPPTAPEP-AGASSEPEAGDWRPEMSPCSNVVVTDVTSNLLTVTIKEFCNPEDFEK 393
>gi|55770830 chromobox homolog 4 [Homo sapiens]
Length = 560
Score = 124 bits (312), Expect = 1e-28
Identities = 66/128 (51%), Positives = 86/128 (67%), Gaps = 15/128 (11%)
Query: 1 MELSAVGERVFAAEALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENILDARLLAAFEER 60
MEL AVGE VFA E++ K+RIRKGR+EYLVKW+GWS KY+TWEPEENILD RLL AF+ R
Sbjct: 1 MELPAVGEHVFAVESIEKKRIRKGRVEYLVKWRGWSPKYNTWEPEENILDPRLLIAFQNR 60
Query: 61 EREMELYGPKKRGPKPKTFLLKAQAKAKAKTYEFRSDSARGIRIPYPGRSPQDLASTSRA 120
ER+ +L G +KRGPKPK ++ + T+ RS+ G+ QD ++ +RA
Sbjct: 61 ERQEQLMGYRKRGPKPKPLVV------QVPTFARRSNVLTGL---------QDSSTDNRA 105
Query: 121 REGLRNMG 128
+ L G
Sbjct: 106 KLDLGAQG 113
Score = 32.3 bits (72), Expect = 0.75
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 326 AQGGRPSLIARIPVARILGDPEEE--SWSPSLTNLEKVVVTDVTSNFLTVTIKE 377
A P+ A P A +P E + P N +++TDVT+N LTVT KE
Sbjct: 506 AAAAAPTTTAEKPPAEAQDEPAESLSEFKPFFGN---IIITDVTANCLTVTFKE 556
>gi|61743963 chromobox homolog 2 isoform 1 [Homo sapiens]
Length = 532
Score = 124 bits (311), Expect = 1e-28
Identities = 112/376 (29%), Positives = 162/376 (43%), Gaps = 96/376 (25%)
Query: 2 ELSAVGERVFAAEALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENILDARLLAAFEERE 61
ELS+VGE+VFAAE +L +R+RKG++EYLVKW+GWS K+++WEPEENILD RLL AF+++E
Sbjct: 3 ELSSVGEQVFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAFQKKE 62
Query: 62 REMELYGPKKRGPKPKTFLLKAQAKAKAKTYEFRSDSARGIRIPYPGRSPQDLASTSRAR 121
E E+ +KRG +P + + + S +R ++ P D S S+
Sbjct: 63 HEKEVQN-RKRGKRP---------RGRPRKLTAMSSCSRRSKLKEP-----DAPSKSK-- 105
Query: 122 EGLRNMGLSPPASSTSTSSTCRAEAPRDRDRDRDRDRERDRERERERERERERERERERG 181
SS+S+SS+ + + D + D D D +R R RE ++
Sbjct: 106 ------------SSSSSSSSTSSSSSSDEEDDSDLDAKRG-------PRGRETHPVPQKK 146
Query: 182 TSRVDDKPSSPGDSSKKRGPKP---------------------RKELPDPSQR---PLGE 217
+ KP KKRG KP RK+L P+ + PL
Sbjct: 147 AQILVAKPELKDPIRKKRGRKPLPPEQKATRRPVSLAKVLKTARKDLGAPASKLPPPLSA 206
Query: 218 PSAGLG-------EYLKGRKLDDTPS-------------GAGKFPAGHSVIQLARRQDSD 257
P AGL E G TP G G S++ R
Sbjct: 207 PVAGLAALKAHAKEACGGPSAMATPENLASLMKGMASSPGRGGISWQSSIVHYMNRMTQS 266
Query: 258 LVQCGVTSPSSAEATGK--LAVDTFPARVIKHRAAFLEAKGQGALDPNGTRVRHGSGPPS 315
Q A+AT K L +D +K R KG+ + P G+++
Sbjct: 267 QAQAASRLALKAQATNKCGLGLD------LKVRT----QKGELGMSPPGSKIPKA----P 312
Query: 316 SGGGLYRDMGAQGGRP 331
SGG + + +G GG P
Sbjct: 313 SGGAVEQKVGNTGGPP 328
Score = 46.6 bits (109), Expect = 4e-05
Identities = 20/37 (54%), Positives = 27/37 (72%)
Query: 349 ESWSPSLTNLEKVVVTDVTSNFLTVTIKESNTDQGFF 385
+ W P+ + +E V VTDVT+N +TVT+KES T GFF
Sbjct: 491 QDWKPTRSLIEHVFVTDVTANLITVTVKESPTSVGFF 527
>gi|28372505 chromobox homolog 7 [Homo sapiens]
Length = 251
Score = 118 bits (295), Expect = 1e-26
Identities = 53/82 (64%), Positives = 67/82 (81%)
Query: 1 MELSAVGERVFAAEALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENILDARLLAAFEER 60
MELSA+GE+VFA E++ K+R+RKG++EYLVKWKGW KYSTWEPEE+ILD RL+ A+EE+
Sbjct: 1 MELSAIGEQVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEK 60
Query: 61 EREMELYGPKKRGPKPKTFLLK 82
E G +KRGPKPK LL+
Sbjct: 61 EERDRASGYRKRGPKPKRLLLQ 82
Score = 42.0 bits (97), Expect = 0.001
Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 11/53 (20%)
Query: 346 PEEES----------WSPSLTNLEKVVVTDVTSNFLTVTIKESNTDQGFFKEK 388
PEEE+ W+P+L + E V VTD+T+N +TVT +E+ +GFF+++
Sbjct: 196 PEEEADADLAEGPPPWTPALPSSE-VTVTDITANSITVTFREAQAAEGFFRDR 247
>gi|14249190 chromobox homolog 2 isoform 2 [Homo sapiens]
Length = 211
Score = 108 bits (269), Expect = 1e-23
Identities = 59/128 (46%), Positives = 82/128 (64%), Gaps = 5/128 (3%)
Query: 2 ELSAVGERVFAAEALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENILDARLLAAFEERE 61
ELS+VGE+VFAAE +L +R+RKG++EYLVKW+GWS K+++WEPEENILD RLL AF+++E
Sbjct: 3 ELSSVGEQVFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAFQKKE 62
Query: 62 REMELYGPKKRGPKPKTFLLKAQAKAK-AKTYEFRSDSARGIRIPYPGRSPQDLASTSRA 120
E E+ +KRG +P+ K A + ++ + + G P S L R
Sbjct: 63 HEKEVQN-RKRGKRPRGRPRKLTAMSSCSRRSKLKVGGCAGYADP---TSQHPLGVGGRQ 118
Query: 121 REGLRNMG 128
REGL G
Sbjct: 119 REGLGPSG 126
>gi|55741709 RNA binding motif protein 25 [Homo sapiens]
Length = 843
Score = 70.9 bits (172), Expect = 2e-12
Identities = 57/171 (33%), Positives = 78/171 (45%), Gaps = 17/171 (9%)
Query: 58 EEREREMELYGPKKRGPKPKTFLLKAQAKAKAKTYEFRSDSARGIRIPYPGRSPQDLAST 117
E RERE E ++R + + + + + + K E + R R
Sbjct: 308 ERRERERERERERERRERERE---REREREREKEKERERERERD-------RDRDRTKER 357
Query: 118 SRAREGLRNMGLSPPASSTSTSSTCRA-EAPRDRDRDRDRDRERDRERERERERERERER 176
R R+ R+ SS R+ E RDR+R+R+R+RER+RERERERERERERER
Sbjct: 358 DRDRDRERDRDRDRERSSDRNKDRSRSREKSRDRERERERERERERERERERERERERER 417
Query: 177 ERERGTSRVDDKPSSPGDSSKKRGPKPRKELPDPSQRPLGEPSAGLGEYLK 227
ERER R DK + + + + E R L E A E LK
Sbjct: 418 EREREREREKDKKRDREEDEEDAYERRKLE------RKLREKEAAYQERLK 462
Score = 51.6 bits (122), Expect = 1e-06
Identities = 30/58 (51%), Positives = 42/58 (72%), Gaps = 3/58 (5%)
Query: 143 RAEAPRDRDRDRDRDRERDRER-ERERERERERERERERGTSRVDDKPSSPGDSSKKR 199
R E ++R R+R+R+RER+RER ERERERERERERE+E+ R ++ D +K+R
Sbjct: 302 RQEIEKER-RERERERERERERREREREREREREREKEKERERERER-DRDRDRTKER 357
Score = 47.0 bits (110), Expect = 3e-05
Identities = 25/39 (64%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 143 RAEAPRDRDRDRDRDRERDRERERE-RERERERERERER 180
+ E R R+RER+RERERE RERERERERERER
Sbjct: 297 KKEKERQEIEKERRERERERERERERRERERERERERER 335
Score = 45.1 bits (105), Expect = 1e-04
Identities = 43/179 (24%), Positives = 80/179 (44%), Gaps = 15/179 (8%)
Query: 59 EREREMELYGPKKRGPKPKTFLLKAQAKAKAKTYEFRSDSARGIRIPYPGRSPQDLASTS 118
ERERE E K+R + + + + K + + + D R RS S
Sbjct: 328 EREREREREKEKERERERERDRDRDRTKERDRDRDRERDRDRDRE-----RSSDRNKDRS 382
Query: 119 RAREGLRNMGLSPPASSTSTSSTCRA-EAPRDRDRDRDRDRERDRERERERERERERERE 177
R+RE R+ R E R+R+R+R+R+RER+++++R+RE + E E
Sbjct: 383 RSREKSRDREREREREREREREREREREREREREREREREREREKDKKRDREEDEEDAYE 442
Query: 178 RERGTSRVDDKPSSPGDSSKKRGPKPRK---------ELPDPSQRPLGEPSAGLGEYLK 227
R + ++ +K ++ + K + RK E + +R + + + L E+L+
Sbjct: 443 RRKLERKLREKEAAYQERLKNWEIRERKKTREYEKEAEREEERRREMAKEAKRLKEFLE 501
Score = 44.7 bits (104), Expect = 1e-04
Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Query: 104 IPYPGRSPQDLASTSRAREGLRNMGLSPPASSTSTSSTCRAEAPRDRDRDRDRDRERDRE 163
IPYP + +D+ + E R++ +S S + E ++++R + RE
Sbjct: 254 IPYPLITKEDI-NAIEMEEDKRDL-ISREISKFRDTHKKLEEEKGKKEKERQEIEKERRE 311
Query: 164 RERERERERE-RERERERGTSRVDDK 188
RERERERERE RERERER R +K
Sbjct: 312 RERERERERERREREREREREREREK 337
Score = 38.9 bits (89), Expect = 0.008
Identities = 21/58 (36%), Positives = 30/58 (51%)
Query: 152 RDRDRDRERDRERERERERERERERERERGTSRVDDKPSSPGDSSKKRGPKPRKELPD 209
R+R + RE ++E ERE ER RE +E +R ++D D RG +K L D
Sbjct: 467 RERKKTREYEKEAEREEERRREMAKEAKRLKEFLEDYDDDRDDPKYYRGSALQKRLRD 524
Score = 35.4 bits (80), Expect = 0.088
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 156 RDRERDRERERERERERERERERERGTSRVDDKPSSPGDSSKKR 199
+++ER + RERERERERERER + + + K+R
Sbjct: 298 KEKERQEIEKERRERERERERERERREREREREREREREKEKER 341
Score = 30.8 bits (68), Expect = 2.2
Identities = 58/272 (21%), Positives = 88/272 (32%), Gaps = 44/272 (16%)
Query: 17 LKRRIRKGRMEYLVKWKGWS--QKYSTWEPEENILDARLLAAFEEREREMELYGPKKRGP 74
L+R++R+ Y + K W ++ T E E+ EER REM K
Sbjct: 446 LERKLREKEAAYQERLKNWEIRERKKTREYEKEA------EREEERRREMA-----KEAK 494
Query: 75 KPKTFLLKAQAKAKAKTYEFRSDSARGIRIPYPGRSPQDLASTSRAREGLRNMGLSPPAS 134
+ K FL Y S + +R D R +E L + A
Sbjct: 495 RLKEFLEDYDDDRDDPKYYRGSALQKRLR-DREKEMEADERDRKREKEELEEIRQRLLAE 553
Query: 135 STSTSSTCRAEAPRDRDRDRDRDRERDRERERERERERERERERERGTSRVDD------- 187
++ +R R +++ E E E E ++E+E +RE ++
Sbjct: 554 GHPDPDAELQRMEQEAERRRQPQIKQEPESEEEEEEKQEKEEKREEPMEEEEEPEQKPCL 613
Query: 188 --------------------KPSSPGDSSKKRGPKPRKELPDPSQRPLGEPSAGLGEYLK 227
P++PGD S P + PD Q P GL L
Sbjct: 614 KPTLRPISSAPSVSSASGNATPNTPGDESPCGIIIPHENSPDQQQPEEHRPKIGLSLKLG 673
Query: 228 GRKLDDTPSGA--GKFPAGHSVIQLARRQDSD 257
P+ K P SV +DSD
Sbjct: 674 ASNSPGQPNSVKRKKLPV-DSVFNKFEDEDSD 704
Score = 30.4 bits (67), Expect = 2.8
Identities = 15/60 (25%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 148 RDRDRDRDRDR-ERDRERERERERERERERERERGTSRVDDKPSSPGDSSKKRGPKPRKE 206
RD + + ++ ++++ER+ + RERERERER R + + + +++ + +E
Sbjct: 285 RDTHKKLEEEKGKKEKERQEIEKERRERERERERERERREREREREREREREKEKERERE 344
>gi|14670268 RD RNA-binding protein [Homo sapiens]
Length = 380
Score = 69.7 bits (169), Expect = 4e-12
Identities = 40/81 (49%), Positives = 51/81 (62%), Gaps = 6/81 (7%)
Query: 130 SPPASSTSTSSTCR-----AEAPRDRDRDRDRDRERDRERERERERERERERERERGTSR 184
SPP S + S R + RDRDRDRDRDRERDR+R+R+R+R+RER+R+RER R
Sbjct: 181 SPPRSRSRDRSHERNRDRDRDRERDRDRDRDRDRERDRDRDRDRDRDRERDRDRERDRDR 240
Query: 185 VDDKPSSPGDSSKKRGPKPRK 205
+ P DS +R PRK
Sbjct: 241 DREGPFRRSDSFPER-RAPRK 260
Score = 64.3 bits (155), Expect = 2e-10
Identities = 39/114 (34%), Positives = 59/114 (51%), Gaps = 4/114 (3%)
Query: 134 SSTSTSSTCRAEAPRDRDRDRDRDRERDRERERERERERERERERERGTSRVDDKPSSPG 193
SS S + + +R+RDRDRDRERDR+R+R+R+RER+R+R+R+R R D+
Sbjct: 178 SSASPPRSRSRDRSHERNRDRDRDRERDRDRDRDRDRERDRDRDRDRDRDRERDRDRERD 237
Query: 194 DSSKKRGPKPRKELPDPSQRPLGEPSAGLGEYLKGRKLDDTPSGAGKFPAGHSV 247
+ GP R + P +R P G Y+ G + T P G+ +
Sbjct: 238 RDRDREGPFRRSD-SFPERR---APRKGNTLYVYGEDMTPTLLRGAFSPFGNII 287
>gi|125988409 RED protein [Homo sapiens]
Length = 557
Score = 68.6 bits (166), Expect = 9e-12
Identities = 40/84 (47%), Positives = 50/84 (59%), Gaps = 15/84 (17%)
Query: 134 SSTSTSSTCRAEAPRDRDRDRDRDRERDRERERERERERERERERERGTS---------- 183
S+T T E R+R+RDR+RDR+RDRERERER+RERERER+RER
Sbjct: 328 STTKTPRDKERERYRERERDRERDRDRDRERERERDRERERERDREREEEKKRHSYFEKP 387
Query: 184 RVDDKPSSPGDSSKKRGPKPRKEL 207
+VDD+P +GP KEL
Sbjct: 388 KVDDEP-----MDVDKGPGSTKEL 406
Score = 62.8 bits (151), Expect = 5e-10
Identities = 32/70 (45%), Positives = 44/70 (62%)
Query: 145 EAPRDRDRDRDRDRERDRERERERERERERERERERGTSRVDDKPSSPGDSSKKRGPKPR 204
+ PRD++R+R R+RERDRER+R+R+RERERER+RER R ++ S PK
Sbjct: 331 KTPRDKERERYRERERDRERDRDRDRERERERDRERERERDREREEEKKRHSYFEKPKVD 390
Query: 205 KELPDPSQRP 214
E D + P
Sbjct: 391 DEPMDVDKGP 400
Score = 50.4 bits (119), Expect = 3e-06
Identities = 30/78 (38%), Positives = 39/78 (50%), Gaps = 11/78 (14%)
Query: 118 SRAREGLRNMGLS-----------PPASSTSTSSTCRAEAPRDRDRDRDRDRERDRERER 166
S R+G RN L PP + + P RD++RER RERER
Sbjct: 287 SYLRQGTRNKKLKKKDKGKLEEKKPPEADMNIFEDIGDYVPSTTKTPRDKERERYRERER 346
Query: 167 ERERERERERERERGTSR 184
+RER+R+R+RERER R
Sbjct: 347 DRERDRDRDRERERERDR 364
>gi|188035910 heterochromatin protein 1-alpha [Homo sapiens]
Length = 191
Score = 63.2 bits (152), Expect = 4e-10
Identities = 36/104 (34%), Positives = 60/104 (57%), Gaps = 6/104 (5%)
Query: 4 SAVGERVFAAEALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENILDARLLAAFEERERE 63
S+ E + E +L RR+ KG++EYL+KWKG+S++++TWEPE+N+ L++ F ++ ++
Sbjct: 13 SSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCPELISEFMKKYKK 72
Query: 64 M---ELYGPKKRGPKPK---TFLLKAQAKAKAKTYEFRSDSARG 101
M E P+++ K F A K E +D ARG
Sbjct: 73 MKEGENNKPREKSESNKRKSNFSNSADDIKSKKKREQSNDIARG 116
>gi|188035908 heterochromatin protein 1-alpha [Homo sapiens]
Length = 191
Score = 63.2 bits (152), Expect = 4e-10
Identities = 36/104 (34%), Positives = 60/104 (57%), Gaps = 6/104 (5%)
Query: 4 SAVGERVFAAEALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENILDARLLAAFEERERE 63
S+ E + E +L RR+ KG++EYL+KWKG+S++++TWEPE+N+ L++ F ++ ++
Sbjct: 13 SSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCPELISEFMKKYKK 72
Query: 64 M---ELYGPKKRGPKPK---TFLLKAQAKAKAKTYEFRSDSARG 101
M E P+++ K F A K E +D ARG
Sbjct: 73 MKEGENNKPREKSESNKRKSNFSNSADDIKSKKKREQSNDIARG 116
>gi|6912292 heterochromatin protein 1-alpha [Homo sapiens]
Length = 191
Score = 63.2 bits (152), Expect = 4e-10
Identities = 36/104 (34%), Positives = 60/104 (57%), Gaps = 6/104 (5%)
Query: 4 SAVGERVFAAEALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENILDARLLAAFEERERE 63
S+ E + E +L RR+ KG++EYL+KWKG+S++++TWEPE+N+ L++ F ++ ++
Sbjct: 13 SSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCPELISEFMKKYKK 72
Query: 64 M---ELYGPKKRGPKPK---TFLLKAQAKAKAKTYEFRSDSARG 101
M E P+++ K F A K E +D ARG
Sbjct: 73 MKEGENNKPREKSESNKRKSNFSNSADDIKSKKKREQSNDIARG 116
>gi|116008442 zinc finger CCCH-type containing 13 [Homo sapiens]
Length = 1564
Score = 62.8 bits (151), Expect = 5e-10
Identities = 47/146 (32%), Positives = 70/146 (47%), Gaps = 10/146 (6%)
Query: 44 PEENILDARLLAAFEEREREMELYGPKKRGPKPKTFL--------LKAQAKAKAKTYEFR 95
PE + D ++FE R E + ++R +P + + L+ + + + + R
Sbjct: 609 PERDNRDQARDSSFERRHGERDRRDNRERDQRPSSPIRHQGRNDELERDERREERRVD-R 667
Query: 96 SDSARGIRIPYPGRSPQDLASTSRAREGLRNMGLSPPASSTSTSSTCRA-EAPRDRDRDR 154
D R R R + R RE R+ + R E ++RDR+R
Sbjct: 668 VDDRRDERARERDRERERDRERERERERERDREREKERELERERAREREREREKERDRER 727
Query: 155 DRDRERDRERERERERERERERERER 180
DRDR+ DRERERERER+RE+ERERER
Sbjct: 728 DRDRDHDRERERERERDREKERERER 753
Score = 62.8 bits (151), Expect = 5e-10
Identities = 29/42 (69%), Positives = 36/42 (85%)
Query: 143 RAEAPRDRDRDRDRDRERDRERERERERERERERERERGTSR 184
R E R+RDR+R+RDRER+RERERER+RERE+ERE ER +R
Sbjct: 672 RDERARERDRERERDRERERERERERDREREKERELERERAR 713
Score = 61.2 bits (147), Expect = 2e-09
Identities = 27/35 (77%), Positives = 32/35 (91%)
Query: 145 EAPRDRDRDRDRDRERDRERERERERERERERERE 179
E RDR+RDRDRD +R+RERERER+RE+ERERERE
Sbjct: 720 EKERDRERDRDRDHDRERERERERDREKERERERE 754
Score = 60.8 bits (146), Expect = 2e-09
Identities = 27/37 (72%), Positives = 33/37 (89%)
Query: 148 RDRDRDRDRDRERDRERERERERERERERERERGTSR 184
RDR+R+RDR+RER+RERER+RERE+ERE ERER R
Sbjct: 679 RDRERERDRERERERERERDREREKERELERERARER 715
Score = 60.8 bits (146), Expect = 2e-09
Identities = 36/81 (44%), Positives = 42/81 (51%), Gaps = 19/81 (23%)
Query: 145 EAPRDRDRDRDRDR-------------------ERDRERERERERERERERERERGTSRV 185
E R+RDRDRD DR ER+RERERERERERERERERER R
Sbjct: 722 ERDRERDRDRDHDRERERERERDREKEREREREERERERERERERERERERERERARERD 781
Query: 186 DDKPSSPGDSSKKRGPKPRKE 206
++ K +G R+E
Sbjct: 782 KERERQRDWEDKDKGRDDRRE 802
Score = 58.9 bits (141), Expect = 7e-09
Identities = 29/57 (50%), Positives = 40/57 (70%), Gaps = 3/57 (5%)
Query: 143 RAEAPRDRDRDRDRDRERDRERERERERERERERERERGTSRVDDKPSSPGDSSKKR 199
R R+R+R+R+R+RER+RERERER RER++ERER+R +DK D +KR
Sbjct: 751 REREERERERERERERERERERERERARERDKERERQRDW---EDKDKGRDDRREKR 804
Score = 58.2 bits (139), Expect = 1e-08
Identities = 31/64 (48%), Positives = 41/64 (64%), Gaps = 3/64 (4%)
Query: 145 EAPRDRDRDRDRDRE---RDRERERERERERERERERERGTSRVDDKPSSPGDSSKKRGP 201
E RDR+++R+R+RE R+RERERERERERERERER R + ++ D K R
Sbjct: 740 ERERDREKEREREREERERERERERERERERERERERARERDKERERQRDWEDKDKGRDD 799
Query: 202 KPRK 205
+ K
Sbjct: 800 RREK 803
Score = 56.2 bits (134), Expect = 5e-08
Identities = 38/117 (32%), Positives = 59/117 (50%), Gaps = 5/117 (4%)
Query: 145 EAPRDRDRDRDRDRERDRERERERERERERERERERGTSRVDDKPSSPGDSSKKRGPKPR 204
E R+R+R+R+R+RER+RER RER++ERER+R+ E DD+ + + R P+
Sbjct: 757 ERERERERERERERERERERARERDKERERQRDWEDKDKGRDDRREKREEIREDRNPRDG 816
Query: 205 KELPDPSQRPLGEPSAGLGEYLKGRK-----LDDTPSGAGKFPAGHSVIQLARRQDS 256
+ +R E S + K R+ D SG K + Q+ R Q+S
Sbjct: 817 HDERKSKKRYRNEGSPSPRQSPKRRREHSPDSDAYNSGDDKNEKHRLLSQVVRPQES 873
Score = 49.7 bits (117), Expect = 5e-06
Identities = 22/36 (61%), Positives = 30/36 (83%)
Query: 145 EAPRDRDRDRDRDRERDRERERERERERERERERER 180
+A +D R+RDRDR R+RERERER++ R+ +RERER
Sbjct: 1326 DADKDWPRNRDRDRLRERERERERDKRRDLDRERER 1361
Score = 48.5 bits (114), Expect = 1e-05
Identities = 26/60 (43%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 141 TCRAEAPRDRDRDRDRDRERDRERERERERERERERERERGTSR-VDDKPSSPGDSSKKR 199
T + E RD D+D R+R+RDR RERERERER++ R+ +R R + D D + R
Sbjct: 1318 TRQREWDRDADKDWPRNRDRDRLRERERERERDKRRDLDRERERLISDSVERDRDRDRDR 1377
Score = 44.7 bits (104), Expect = 1e-04
Identities = 24/65 (36%), Positives = 37/65 (56%)
Query: 148 RDRDRDRDRDRERDRERERERERERERERERERGTSRVDDKPSSPGDSSKKRGPKPRKEL 207
R R+ DRD D++ R R+R+R RERERERER++ ++ DS ++ + R
Sbjct: 1319 RQREWDRDADKDWPRNRDRDRLRERERERERDKRRDLDRERERLISDSVERDRDRDRDRT 1378
Query: 208 PDPSQ 212
+ SQ
Sbjct: 1379 FESSQ 1383
Score = 43.1 bits (100), Expect = 4e-04
Identities = 41/129 (31%), Positives = 54/129 (41%), Gaps = 24/129 (18%)
Query: 80 LLKAQAKAKAKTYEFRSDSARGIRIPY-----PGRSPQDLASTSRAREGLRNMGLSPPAS 134
+L + ++ + KT R RI P RS SR+ R S P S
Sbjct: 1227 VLHSGSRDREKTKSLEITGERKSRIDQLKRGEPSRSTSSDRQDSRSHSSRR----SSPES 1282
Query: 135 STSTSSTCRAEAPRDRDRDRDR---DRERDRERERERERE------------RERERERE 179
S + RDR ++RDR DRER+RER R+RE R+R+R RE
Sbjct: 1283 DRQVHSRSGSFDSRDRLQERDRYEHDRERERERRDTRQREWDRDADKDWPRNRDRDRLRE 1342
Query: 180 RGTSRVDDK 188
R R DK
Sbjct: 1343 RERERERDK 1351
Score = 39.7 bits (91), Expect = 0.005
Identities = 31/111 (27%), Positives = 48/111 (43%), Gaps = 17/111 (15%)
Query: 105 PYPGRS---PQDLASTSRAREGLRNMGLSPPASSTSTSSTCRAEAPRDRDRDRDRDRERD 161
PYP S PQ S R R +R G ++ + DR +R +
Sbjct: 373 PYPSHSLSSPQRKQSPPRHRSPMREKGRHDHERTSQS-----------HDRRHERREDTR 421
Query: 162 RERERERERERERERERERGTS---RVDDKPSSPGDSSKKRGPKPRKELPD 209
+R+RE++ ERE E+++ +S R D +P D R + R+EL D
Sbjct: 422 GKRDREKDSREEREYEQDQSSSRDHRDDREPRDGRDRRDARDTRDRRELRD 472
Score = 39.3 bits (90), Expect = 0.006
Identities = 18/42 (42%), Positives = 29/42 (69%)
Query: 145 EAPRDRDRDRDRDRERDRERERERERERERERERERGTSRVD 186
E R+RD+ RD DRER+R ER+R+R+R+R +S+++
Sbjct: 1344 ERERERDKRRDLDRERERLISDSVERDRDRDRDRTFESSQIE 1385
Score = 37.4 bits (85), Expect = 0.023
Identities = 37/105 (35%), Positives = 49/105 (46%), Gaps = 11/105 (10%)
Query: 93 EFRSDSARGIRIPYPGRS----PQDLASTSRAREGLRNMGLSPPASSTSTSSTCRAEAPR 148
E R++S IR GRS P+ SR G + S ++ + T + R
Sbjct: 546 ESRNESRSEIRNDRMGRSRGRVPELPEKGSRGSRGSQIDSHSSNSNYHDSWETRSSYPER 605
Query: 149 DRDRDRD-RDRERDRERERERERERERERERERGTSRVDDKPSSP 192
DR +RD RD+ RD ER R ER+R RER D +PSSP
Sbjct: 606 DRYPERDNRDQARDSSFER-RHGERDRRDNRER-----DQRPSSP 644
Score = 37.0 bits (84), Expect = 0.030
Identities = 49/188 (26%), Positives = 75/188 (39%), Gaps = 31/188 (16%)
Query: 58 EEREREMELYGPKKRGPK-------PKTFLLKAQAKAKAKTYEFRSDSARGIRIPYPGRS 110
E E+ E+ K+ P+ P L K+ K K+ S +++ R S
Sbjct: 183 ENMEKREEIIIKKEVSPEVVRSKLSPSPSLRKSSKSPKRKSSPKSSSASKKDRKTSAVSS 242
Query: 111 P-----QDLASTSRAREGLRNMGLSPPASSTSTSSTCRAEAPRDRDR--DRDRDRERDRE 163
P ++ + ++G R PP E + +DR ++ RD +DR
Sbjct: 243 PLLDQQRNSKTNQSKKKGPRTPSPPPPIPEDIALGKKYKEKYKVKDRIEEKTRD-GKDRG 301
Query: 164 RERERERERERERERERGT-----------SRVDDKPSSPGDSSKKRGPKP-RKELPDPS 211
R+ ER+RE+ R++ R T SR S G S ++ P P RK P PS
Sbjct: 302 RDFERQREK---RDKPRSTSPAGQHHSPISSRHHSSSSQSGSSIQRHSPSPRRKRTPSPS 358
Query: 212 -QRPLGEP 218
QR L P
Sbjct: 359 YQRTLTPP 366
Score = 31.6 bits (70), Expect = 1.3
Identities = 34/115 (29%), Positives = 51/115 (44%), Gaps = 19/115 (16%)
Query: 145 EAPRDRDRDRDRDRER--------DRERERERERERERERERERGTSRVD-----DKPSS 191
E RD+ RD DR+RER DR+R+R+R E + +R ++++ D S+
Sbjct: 1346 ERERDKRRDLDRERERLISDSVERDRDRDRDRTFESSQIESVKRCEAKLEGEHERDLEST 1405
Query: 192 PGDS---SKKRGPKPRKELPDPSQRPLGEPSAGLGEYLKGRKLDDT---PSGAGK 240
DS K+R K + + E + L KLDD SGAG+
Sbjct: 1406 SRDSLALDKERMDKDLGSVQGFEETNKSERTESLEAGDDESKLDDAHSLGSGAGE 1460
Score = 29.6 bits (65), Expect = 4.9
Identities = 26/93 (27%), Positives = 37/93 (39%), Gaps = 2/93 (2%)
Query: 100 RGIRIPYPGRSPQDLASTSRAREGLRNMGLSPPASSTSTS-STCRAEAPRDRDRDRDRDR 158
R R P GR +D T RE + + S T + PRD RD
Sbjct: 447 RDDREPRDGRDRRDARDTRDRRELRDSRDMRDSREMRDYSRDTKESRDPRDSRSTRDAHD 506
Query: 159 ERDRE-RERERERERERERERERGTSRVDDKPS 190
RDRE R+ R+ + E R G + + ++ S
Sbjct: 507 YRDREGRDTHRKEDTYPEESRSYGRNHLREESS 539
>gi|239747134 PREDICTED: hypothetical protein XP_002343921 [Homo
sapiens]
Length = 600
Score = 62.0 bits (149), Expect = 9e-10
Identities = 48/148 (32%), Positives = 64/148 (43%), Gaps = 12/148 (8%)
Query: 59 EREREMELYGPKKRGPKPKTFLLKAQAKAKAKTYEFRSDSARGIRIPYPGRSPQDLASTS 118
ERERE E +KR + + KT R A R
Sbjct: 213 ERERETETETERKRQTD-------RERDRQRKTEREREKQAERERASERETERDKERERE 265
Query: 119 RAREGLRNMGLSPPASSTSTSSTCRAEAPRDRDRDRDRDRERDRERERERERERERERER 178
R R+ R+ T R E R+ +R R+R RER+RERER R+RERERERER
Sbjct: 266 RDRDRDRDRRQKERERQTDRKRQRRTERDRETERKRERQRERERERERNRKRERERERER 325
Query: 179 ERGTSRVDDKPSSPGDSSKKRGPKPRKE 206
ER R ++ D K+R K +++
Sbjct: 326 ERERQRETER-----DREKERERKRKRQ 348
Score = 56.6 bits (135), Expect = 4e-08
Identities = 25/61 (40%), Positives = 42/61 (68%)
Query: 145 EAPRDRDRDRDRDRERDRERERERERERERERERERGTSRVDDKPSSPGDSSKKRGPKPR 204
E R R+R+R+R+RER+R+RE ER+RE+ERER+R+R T ++ G +++ + R
Sbjct: 312 ERNRKRERERERERERERQRETERDREKERERKRKRQTEMDRERNRQTGREGRRQAERER 371
Query: 205 K 205
+
Sbjct: 372 E 372
Score = 56.6 bits (135), Expect = 4e-08
Identities = 41/146 (28%), Positives = 70/146 (47%), Gaps = 19/146 (13%)
Query: 59 EREREMELYGPKKRGPKPKTFLLKAQAKAKAKTYEFRSDSARGIRIPYPGRSPQDLASTS 118
ERERE E ++R + +T + + + + + + D R + GR + A
Sbjct: 318 ERERERE----RERERQRETERDREKERERKRKRQTEMDRERNRQT---GREGRRQAERE 370
Query: 119 RAREGLRNMGLSPPASSTSTSSTCRAEAPRDRDRDRDRDRERDRERERERERERERERER 178
R RE R+ + R R+RDRDRDR +ER+R+ E++R+ +RE E++R
Sbjct: 371 RERERERDR------------QSAREREERERDRDRDRQKERERQTEKDRDGQRETEKQR 418
Query: 179 ERGTSRVDDKPSSPGDSSKKRGPKPR 204
ER R ++ G +K+ + R
Sbjct: 419 EREKDRESERGRERGREREKQKGRER 444
Score = 55.8 bits (133), Expect = 6e-08
Identities = 29/102 (28%), Positives = 51/102 (50%)
Query: 108 GRSPQDLASTSRAREGLRNMGLSPPASSTSTSSTCRAEAPRDRDRDRDRDRERDRERERE 167
G++ +D R R + T + + E R++DR R RDR R+R+R+RE
Sbjct: 43 GQAHKDADGDDRERNRQKERERRREKRQTERETDRKRERRREKDRHRKRDRHRERQRDRE 102
Query: 168 RERERERERERERGTSRVDDKPSSPGDSSKKRGPKPRKELPD 209
+ERER+ +RER+R + ++ +++ G + R D
Sbjct: 103 KERERQTDRERDRQREKERNRQKERERETEREGERGRDRQTD 144
Score = 53.1 bits (126), Expect = 4e-07
Identities = 23/62 (37%), Positives = 39/62 (62%)
Query: 148 RDRDRDRDRDRERDRERERERERERERERERERGTSRVDDKPSSPGDSSKKRGPKPRKEL 207
R R+R RDR++ER+R+ +RER+R+RE+ER R++ R ++ G + G + R+
Sbjct: 93 RHRERQRDREKERERQTDRERDRQREKERNRQKERERETEREGERGRDRQTDGQRERERQ 152
Query: 208 PD 209
D
Sbjct: 153 RD 154
Score = 52.4 bits (124), Expect = 7e-07
Identities = 23/62 (37%), Positives = 38/62 (61%)
Query: 145 EAPRDRDRDRDRDRERDRERERERERERERERERERGTSRVDDKPSSPGDSSKKRGPKPR 204
+A ++R+R DR+R+R ER R++ERERE+ R+ R R +K + D +RG +
Sbjct: 154 DAEKERERQTDRERQRQTERNRQKEREREKNRQERRERERQREKENKTEDRHSERGRERE 213
Query: 205 KE 206
+E
Sbjct: 214 RE 215
Score = 52.0 bits (123), Expect = 9e-07
Identities = 34/101 (33%), Positives = 51/101 (50%), Gaps = 7/101 (6%)
Query: 145 EAPRDRDRDRDRDRERDRERERERERERERERERERGTSRVDDKPSSPGDSSKKRGPKPR 204
E + R+R++DR+ ER RER RERE+++ RER+RER T R + S+ P PR
Sbjct: 413 ETEKQREREKDRESERGRERGREREKQKGRERDRERQTDRQAGRQRK--RSTLYVNPPPR 470
Query: 205 KELPDPSQRPLGEPSAGLGEYLKGRKLDDTPSGAG-KFPAG 244
Q P+ G ++ + + P A +FP G
Sbjct: 471 TARSGVVQSDPNRPTRG----IRWKSSPEDPKAASTRFPWG 507
Score = 51.2 bits (121), Expect = 2e-06
Identities = 25/61 (40%), Positives = 37/61 (60%)
Query: 145 EAPRDRDRDRDRDRERDRERERERERERERERERERGTSRVDDKPSSPGDSSKKRGPKPR 204
E R RDR D RER+R+R+ E+ERER+ +RER+R T R K + ++R + R
Sbjct: 134 EGERGRDRQTDGQRERERQRDAEKERERQTDRERQRQTERNRQKEREREKNRQERRERER 193
Query: 205 K 205
+
Sbjct: 194 Q 194
Score = 49.7 bits (117), Expect = 5e-06
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 24/93 (25%)
Query: 145 EAPRDRDRDRDRDRERDRERERER------------------------ERERERERERER 180
E R+R+R+R R+ ERDRE+ERER ERERERERER+R
Sbjct: 320 ERERERERERQRETERDREKERERKRKRQTEMDRERNRQTGREGRRQAERERERERERDR 379
Query: 181 GTSRVDDKPSSPGDSSKKRGPKPRKELPDPSQR 213
++R ++ D +++ + + E QR
Sbjct: 380 QSAREREERERDRDRDRQKERERQTEKDRDGQR 412
Score = 48.5 bits (114), Expect = 1e-05
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 16/80 (20%)
Query: 143 RAEAPRDRDRDRDRDRERDRERE----------------RERERERERERERERGTSRVD 186
+ + RDR R+++R+R+++RERE RERER+R+ E+ERER T R
Sbjct: 108 QTDRERDRQREKERNRQKERERETEREGERGRDRQTDGQRERERQRDAEKERERQTDRER 167
Query: 187 DKPSSPGDSSKKRGPKPRKE 206
+ + ++ K R+E
Sbjct: 168 QRQTERNRQKEREREKNRQE 187
Score = 48.5 bits (114), Expect = 1e-05
Identities = 39/148 (26%), Positives = 66/148 (44%), Gaps = 11/148 (7%)
Query: 58 EEREREMELYGPKKRGPKPKTFLLKAQAKAKAKTYEFRSDSARGIRIPYPGRSPQDLAST 117
+ERERE E G + R + + + + K E ++D R R +
Sbjct: 125 KERERETEREGERGRDRQTDGQRERERQRDAEKERERQTDRERQ-------RQTERNRQK 177
Query: 118 SRAREGLRNMGLSPPASSTSTSSTCRAEAPRDRDRDRDRDRERDRERERERERERERERE 177
R RE R + T R +R R+R+RER+ E E ER+R+ +RER+
Sbjct: 178 EREREKNRQERRERERQREKENKT----EDRHSERGRERERERETETETERKRQTDRERD 233
Query: 178 RERGTSRVDDKPSSPGDSSKKRGPKPRK 205
R+R T R +K + +S++ + ++
Sbjct: 234 RQRKTEREREKQAERERASERETERDKE 261
Score = 47.0 bits (110), Expect = 3e-05
Identities = 21/62 (33%), Positives = 36/62 (58%)
Query: 145 EAPRDRDRDRDRDRERDRERERERERERERERERERGTSRVDDKPSSPGDSSKKRGPKPR 204
E RDR D R+RER R+ E+ERER+ +RER+R+ +R ++ ++ + R
Sbjct: 136 ERGRDRQTDGQRERERQRDAEKERERQTDRERQRQTERNRQKEREREKNRQERRERERQR 195
Query: 205 KE 206
++
Sbjct: 196 EK 197
Score = 41.6 bits (96), Expect = 0.001
Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 132 PASSTSTSSTCRAEAPRDRDRDRDRDRERDRERERERE-RERERERERERGTSRVDDK 188
P S S +A +D D D DR+R R +ERER RE R+ ERE +R+R R D+
Sbjct: 31 PGSQESPRRRGLGQAHKDADGD-DRERNRQKERERRREKRQTERETDRKRERRREKDR 87
Score = 40.8 bits (94), Expect = 0.002
Identities = 22/83 (26%), Positives = 37/83 (44%)
Query: 148 RDRDRDRDRDRERDRERERERERERERERERERGTSRVDDKPSSPGDSSKKRGPKPRKEL 207
R R +R+ +R RER RE++R R+R+R RER R ++ ++ K R
Sbjct: 65 RREKRQTERETDRKRERRREKDRHRKRDRHRERQRDREKERERQTDRERDRQREKERNRQ 124
Query: 208 PDPSQRPLGEPSAGLGEYLKGRK 230
+ + E G G++
Sbjct: 125 KERERETEREGERGRDRQTDGQR 147
Score = 32.3 bits (72), Expect = 0.75
Identities = 17/55 (30%), Positives = 26/55 (47%)
Query: 145 EAPRDRDRDRDRDRERDRERERERERERERERERERGTSRVDDKPSSPGDSSKKR 199
E+PR R + +RER R++ERER RE+ + D K + + R
Sbjct: 35 ESPRRRGLGQAHKDADGDDRERNRQKERERRREKRQTERETDRKRERRREKDRHR 89
>gi|201023341 FIP1 like 1 isoform 3 [Homo sapiens]
Length = 520
Score = 62.0 bits (149), Expect = 9e-10
Identities = 30/49 (61%), Positives = 35/49 (71%)
Query: 131 PPASSTSTSSTCRAEAPRDRDRDRDRDRERDRERERERERERERERERE 179
P TS A +DRDR+RDRDRERDR+R+RERER RERERER+
Sbjct: 368 PSLVDTSKQWDYYARREKDRDRERDRDRERDRDRDRERERTRERERERD 416
Score = 59.7 bits (143), Expect = 4e-09
Identities = 29/50 (58%), Positives = 37/50 (74%)
Query: 134 SSTSTSSTCRAEAPRDRDRDRDRDRERDRERERERERERERERERERGTS 183
S TS A R++DRDR+RDR+R+R+R+R+RERER RERERER S
Sbjct: 369 SLVDTSKQWDYYARREKDRDRERDRDRERDRDRDRERERTRERERERDHS 418
Score = 54.7 bits (130), Expect = 1e-07
Identities = 26/48 (54%), Positives = 35/48 (72%)
Query: 152 RDRDRDRERDRERERERERERERERERERGTSRVDDKPSSPGDSSKKR 199
R++DRDRERDR+RER+R+R+RERER RER R S +S ++R
Sbjct: 383 REKDRDRERDRDRERDRDRDRERERTRERERERDHSPTPSVFNSDEER 430
Score = 49.7 bits (117), Expect = 5e-06
Identities = 25/61 (40%), Positives = 36/61 (59%)
Query: 132 PASSTSTSSTCRAEAPRDRDRDRDRDRERDRERERERERERERERERERGTSRVDDKPSS 191
P S+ S S D R++DR+R+R+R+RER+R+R+RERER R R D +
Sbjct: 361 PGSAPSWPSLVDTSKQWDYYARREKDRDRERDRDRERDRDRDRERERTRERERERDHSPT 420
Query: 192 P 192
P
Sbjct: 421 P 421
Score = 38.1 bits (87), Expect = 0.014
Identities = 30/106 (28%), Positives = 38/106 (35%), Gaps = 45/106 (42%)
Query: 145 EAPRDRDRDRDRDRERDRERERERER---------------------------------- 170
E RDR+RDRDRDRER+R RERERER
Sbjct: 390 ERDRDRERDRDRDRERERTRERERERDHSPTPSVFNSDEERYRYREYAERGYERHRASRE 449
Query: 171 -----------ERERERERERGTSRVDDKPSSPGDSSKKRGPKPRK 205
E+E R + ++ S GDS ++ K K
Sbjct: 450 KEERHRERRHREKEETRHKSSRSNSRRRHESEEGDSHRRHKHKKSK 495
>gi|201023339 FIP1 like 1 isoform 2 [Homo sapiens]
Length = 588
Score = 62.0 bits (149), Expect = 9e-10
Identities = 30/49 (61%), Positives = 35/49 (71%)
Query: 131 PPASSTSTSSTCRAEAPRDRDRDRDRDRERDRERERERERERERERERE 179
P TS A +DRDR+RDRDRERDR+R+RERER RERERER+
Sbjct: 436 PSLVDTSKQWDYYARREKDRDRERDRDRERDRDRDRERERTRERERERD 484
Score = 59.7 bits (143), Expect = 4e-09
Identities = 29/50 (58%), Positives = 37/50 (74%)
Query: 134 SSTSTSSTCRAEAPRDRDRDRDRDRERDRERERERERERERERERERGTS 183
S TS A R++DRDR+RDR+R+R+R+R+RERER RERERER S
Sbjct: 437 SLVDTSKQWDYYARREKDRDRERDRDRERDRDRDRERERTRERERERDHS 486
Score = 54.7 bits (130), Expect = 1e-07
Identities = 26/48 (54%), Positives = 35/48 (72%)
Query: 152 RDRDRDRERDRERERERERERERERERERGTSRVDDKPSSPGDSSKKR 199
R++DRDRERDR+RER+R+R+RERER RER R S +S ++R
Sbjct: 451 REKDRDRERDRDRERDRDRDRERERTRERERERDHSPTPSVFNSDEER 498
Score = 49.7 bits (117), Expect = 5e-06
Identities = 25/61 (40%), Positives = 36/61 (59%)
Query: 132 PASSTSTSSTCRAEAPRDRDRDRDRDRERDRERERERERERERERERERGTSRVDDKPSS 191
P S+ S S D R++DR+R+R+R+RER+R+R+RERER R R D +
Sbjct: 429 PGSAPSWPSLVDTSKQWDYYARREKDRDRERDRDRERDRDRDRERERTRERERERDHSPT 488
Query: 192 P 192
P
Sbjct: 489 P 489
Score = 38.1 bits (87), Expect = 0.014
Identities = 30/106 (28%), Positives = 38/106 (35%), Gaps = 45/106 (42%)
Query: 145 EAPRDRDRDRDRDRERDRERERERER---------------------------------- 170
E RDR+RDRDRDRER+R RERERER
Sbjct: 458 ERDRDRERDRDRDRERERTRERERERDHSPTPSVFNSDEERYRYREYAERGYERHRASRE 517
Query: 171 -----------ERERERERERGTSRVDDKPSSPGDSSKKRGPKPRK 205
E+E R + ++ S GDS ++ K K
Sbjct: 518 KEERHRERRHREKEETRHKSSRSNSRRRHESEEGDSHRRHKHKKSK 563
>gi|40254978 FIP1 like 1 isoform 1 [Homo sapiens]
Length = 594
Score = 62.0 bits (149), Expect = 9e-10
Identities = 30/49 (61%), Positives = 35/49 (71%)
Query: 131 PPASSTSTSSTCRAEAPRDRDRDRDRDRERDRERERERERERERERERE 179
P TS A +DRDR+RDRDRERDR+R+RERER RERERER+
Sbjct: 442 PSLVDTSKQWDYYARREKDRDRERDRDRERDRDRDRERERTRERERERD 490
Score = 59.7 bits (143), Expect = 4e-09
Identities = 29/50 (58%), Positives = 37/50 (74%)
Query: 134 SSTSTSSTCRAEAPRDRDRDRDRDRERDRERERERERERERERERERGTS 183
S TS A R++DRDR+RDR+R+R+R+R+RERER RERERER S
Sbjct: 443 SLVDTSKQWDYYARREKDRDRERDRDRERDRDRDRERERTRERERERDHS 492
Score = 54.7 bits (130), Expect = 1e-07
Identities = 26/48 (54%), Positives = 35/48 (72%)
Query: 152 RDRDRDRERDRERERERERERERERERERGTSRVDDKPSSPGDSSKKR 199
R++DRDRERDR+RER+R+R+RERER RER R S +S ++R
Sbjct: 457 REKDRDRERDRDRERDRDRDRERERTRERERERDHSPTPSVFNSDEER 504
Score = 49.7 bits (117), Expect = 5e-06
Identities = 25/61 (40%), Positives = 36/61 (59%)
Query: 132 PASSTSTSSTCRAEAPRDRDRDRDRDRERDRERERERERERERERERERGTSRVDDKPSS 191
P S+ S S D R++DR+R+R+R+RER+R+R+RERER R R D +
Sbjct: 435 PGSAPSWPSLVDTSKQWDYYARREKDRDRERDRDRERDRDRDRERERTRERERERDHSPT 494
Query: 192 P 192
P
Sbjct: 495 P 495
Score = 38.1 bits (87), Expect = 0.014
Identities = 30/106 (28%), Positives = 38/106 (35%), Gaps = 45/106 (42%)
Query: 145 EAPRDRDRDRDRDRERDRERERERER---------------------------------- 170
E RDR+RDRDRDRER+R RERERER
Sbjct: 464 ERDRDRERDRDRDRERERTRERERERDHSPTPSVFNSDEERYRYREYAERGYERHRASRE 523
Query: 171 -----------ERERERERERGTSRVDDKPSSPGDSSKKRGPKPRK 205
E+E R + ++ S GDS ++ K K
Sbjct: 524 KEERHRERRHREKEETRHKSSRSNSRRRHESEEGDSHRRHKHKKSK 569
>gi|239747891 PREDICTED: hypothetical protein [Homo sapiens]
Length = 202
Score = 61.6 bits (148), Expect = 1e-09
Identities = 42/149 (28%), Positives = 73/149 (48%), Gaps = 16/149 (10%)
Query: 58 EEREREMELYGPKKRGPKPKTFLLKAQAKAKAKTYEFRSDSARGIRIPYPGRSPQDLAST 117
+ERER+ E ++R + + + + + + + + ++D R R + T
Sbjct: 54 KERERQKERDRQRQRERETERETERQRERQRQRERKRQTDRERD-----KDRDRERKRET 108
Query: 118 SRAREGLRNMGLSPPASSTSTSSTCRAEAPRDRDRDRDRDRERDRERERERERERERERE 177
R RE R G + R+RDR+R+R R+R+RER+R+RER+RE +RE
Sbjct: 109 DRNRERNRKGGRERDK-----------QTERERDRERERQRQRERERQRQRERKRETDRE 157
Query: 178 RERGTSRVDDKPSSPGDSSKKRGPKPRKE 206
R+R R + K + K+R K ++E
Sbjct: 158 RQRWAEREERKKERKKERKKERKEKKKEE 186
Score = 58.2 bits (139), Expect = 1e-08
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 139 SSTCRAEAPRDRDRDRDRDRERDRERERERERERERERERERGTSRVDDK 188
+ T R R RDR R+RDR+ DRE+ERER++ER+R+R+RER T R ++
Sbjct: 29 NQTERENRHRQRDRHRERDRQTDREKERERQKERDRQRQRERETERETER 78
Score = 55.5 bits (132), Expect = 8e-08
Identities = 27/68 (39%), Positives = 39/68 (57%)
Query: 117 TSRAREGLRNMGLSPPASSTSTSSTCRAEAPRDRDRDRDRDRERDRERERERERERERER 176
T R +E R + + + R R+RDR DRE++RER++ER+R+R+RER
Sbjct: 11 TDRGKETERERDRQRERENQTERENRHRQRDRHRERDRQTDREKERERQKERDRQRQRER 70
Query: 177 ERERGTSR 184
E ER T R
Sbjct: 71 ETERETER 78
Score = 53.5 bits (127), Expect = 3e-07
Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 143 RAEAPRDRDRDRDRDRERDRERERERERERERERERERGTSRVDDKP-SSPGDSSKKRGP 201
+ + ++R+R ++RDR+R RERE ERE ER+RER+R+R R D+ D +KR
Sbjct: 49 QTDREKERERQKERDRQRQRERETERETERQRERQRQRERKRQTDRERDKDRDRERKRET 108
Query: 202 KPRKE 206
+E
Sbjct: 109 DRNRE 113
Score = 50.8 bits (120), Expect = 2e-06
Identities = 24/65 (36%), Positives = 38/65 (58%)
Query: 145 EAPRDRDRDRDRDRERDRERERERERERERERERERGTSRVDDKPSSPGDSSKKRGPKPR 204
E R DR+++R+R+++R+R+R+RERE ERE ER+R R ++ K + R
Sbjct: 45 ERDRQTDREKERERQKERDRQRQRERETERETERQRERQRQRERKRQTDRERDKDRDRER 104
Query: 205 KELPD 209
K D
Sbjct: 105 KRETD 109
Score = 50.4 bits (119), Expect = 3e-06
Identities = 21/37 (56%), Positives = 30/37 (81%)
Query: 148 RDRDRDRDRDRERDRERERERERERERERERERGTSR 184
R+RDR DR++ER+R++ER+R+R+RERE ERE R
Sbjct: 44 RERDRQTDREKERERQKERDRQRQRERETERETERQR 80
Score = 50.1 bits (118), Expect = 3e-06
Identities = 22/57 (38%), Positives = 38/57 (66%)
Query: 149 DRDRDRDRDRERDRERERERERERERERERERGTSRVDDKPSSPGDSSKKRGPKPRK 205
+R R RDR RERDR+ +RE+ERER++ER+R+R R ++ + +++ + R+
Sbjct: 35 NRHRQRDRHRERDRQTDREKERERQKERDRQRQRERETERETERQRERQRQRERKRQ 91
Score = 46.6 bits (109), Expect = 4e-05
Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
Query: 143 RAEAPRDRDRDRDRDRERDRERERERE---RERERERERERGTSRVDDKP-SSPGDSSKK 198
+ E R ++ +R+RDR+R+RE + ERE R+R+R RER+R T R ++ D ++
Sbjct: 8 KRETDRGKETERERDRQRERENQTERENRHRQRDRHRERDRQTDREKERERQKERDRQRQ 67
Query: 199 RGPKPRKELPDPSQR 213
R + +E +R
Sbjct: 68 RERETERETERQRER 82
Score = 46.2 bits (108), Expect = 5e-05
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 11/76 (14%)
Query: 145 EAPRDRDRDRD-----------RDRERDRERERERERERERERERERGTSRVDDKPSSPG 193
E RDR R+R+ RDR R+R+R+ +RE+ERER++ER+R R +
Sbjct: 18 ERERDRQRERENQTERENRHRQRDRHRERDRQTDREKERERQKERDRQRQRERETERETE 77
Query: 194 DSSKKRGPKPRKELPD 209
+++ + RK D
Sbjct: 78 RQRERQRQRERKRQTD 93
Score = 44.7 bits (104), Expect = 1e-04
Identities = 25/58 (43%), Positives = 36/58 (62%), Gaps = 6/58 (10%)
Query: 145 EAPRDRDRDRDRDRERDRERERERERERERERE---RERGTSRVDDKPSSPGDSSKKR 199
E R+R R+ DR +E +RER+R+RERE + ERE R+R R D+ + D K+R
Sbjct: 2 ERQRERKRETDRGKETERERDRQRERENQTERENRHRQRDRHRERDRQT---DREKER 56
Score = 44.7 bits (104), Expect = 1e-04
Identities = 23/66 (34%), Positives = 37/66 (56%)
Query: 148 RDRDRDRDRDRERDRERERERERERERERERERGTSRVDDKPSSPGDSSKKRGPKPRKEL 207
R R+R R+ DR ++ ERER+R+RERE + ERE + D + +++ + +KE
Sbjct: 3 RQRERKRETDRGKETERERDRQRERENQTERENRHRQRDRHRERDRQTDREKERERQKER 62
Query: 208 PDPSQR 213
QR
Sbjct: 63 DRQRQR 68
Score = 38.5 bits (88), Expect = 0.010
Identities = 21/51 (41%), Positives = 35/51 (68%), Gaps = 2/51 (3%)
Query: 145 EAPRDRDRDRDRDRERDRERERERERERERER-ERERGTSRVDDKPSSPGD 194
E R+ DR+R R ER+ ER++ER++ER++ER E+++ R +DK G+
Sbjct: 149 ERKRETDRERQRWAERE-ERKKERKKERKKERKEKKKEEKRREDKKRKWGE 198
Score = 38.1 bits (87), Expect = 0.014
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 155 DRDRERDRERERERERERERERERERGTSRVDDKPSSPGDSSKKRGPKPRKE 206
+R RER RE +R +E ERER+R+RER + D ++R + +E
Sbjct: 2 ERQRERKRETDRGKETERERDRQRERENQTERENRHRQRDRHRERDRQTDRE 53
>gi|197333879 genetic suppressor element 1 isoform 2 [Homo sapiens]
Length = 1113
Score = 61.6 bits (148), Expect = 1e-09
Identities = 40/110 (36%), Positives = 59/110 (53%), Gaps = 2/110 (1%)
Query: 109 RSPQDLASTSRAR-EGLRNMGLSPPASSTSTSSTCRAEAPRDRDRDRDRDRERDRERERE 167
R P +L+ +S A R GLS E R+R+R+R+ DRER++ERERE
Sbjct: 201 RYPPELSHSSLAALHSERMSGLSAERLQMDEELRREREREREREREREADREREKERERE 260
Query: 168 RERERERERERERGTSRVDDKPSSPGDSSKKRGPKPRKELPDPSQRPLGE 217
RE+ERE+E+ERER R + ++++ K L +PS P+ E
Sbjct: 261 REKEREQEKEREREKERERELERQREQRAREKELLAAKAL-EPSFLPVAE 309
>gi|44955926 genetic suppressor element 1 isoform 1 [Homo sapiens]
Length = 1217
Score = 61.6 bits (148), Expect = 1e-09
Identities = 40/110 (36%), Positives = 59/110 (53%), Gaps = 2/110 (1%)
Query: 109 RSPQDLASTSRAR-EGLRNMGLSPPASSTSTSSTCRAEAPRDRDRDRDRDRERDRERERE 167
R P +L+ +S A R GLS E R+R+R+R+ DRER++ERERE
Sbjct: 305 RYPPELSHSSLAALHSERMSGLSAERLQMDEELRREREREREREREREADREREKERERE 364
Query: 168 RERERERERERERGTSRVDDKPSSPGDSSKKRGPKPRKELPDPSQRPLGE 217
RE+ERE+E+ERER R + ++++ K L +PS P+ E
Sbjct: 365 REKEREQEKEREREKERERELERQREQRAREKELLAAKAL-EPSFLPVAE 413
>gi|15082258 chromobox homolog 3 [Homo sapiens]
Length = 183
Score = 60.1 bits (144), Expect = 3e-09
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 4/91 (4%)
Query: 11 FAAEALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENILDARLLAAFEEREREMELYGPK 70
F E +L RR+ G++EY +KWKG++ +TWEPEEN+ L+ AF ++ G +
Sbjct: 30 FVVEKVLDRRVVNGKVEYFLKWKGFTDADNTWEPEENLDCPELIEAFLNSQKA----GKE 85
Query: 71 KRGPKPKTFLLKAQAKAKAKTYEFRSDSARG 101
K G K K+ +K+K +D RG
Sbjct: 86 KDGTKRKSLSDSESDDSKSKKKRDAADKPRG 116
>gi|20544151 chromobox homolog 3 [Homo sapiens]
Length = 183
Score = 60.1 bits (144), Expect = 3e-09
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 4/91 (4%)
Query: 11 FAAEALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENILDARLLAAFEEREREMELYGPK 70
F E +L RR+ G++EY +KWKG++ +TWEPEEN+ L+ AF ++ G +
Sbjct: 30 FVVEKVLDRRVVNGKVEYFLKWKGFTDADNTWEPEENLDCPELIEAFLNSQKA----GKE 85
Query: 71 KRGPKPKTFLLKAQAKAKAKTYEFRSDSARG 101
K G K K+ +K+K +D RG
Sbjct: 86 KDGTKRKSLSDSESDDSKSKKKRDAADKPRG 116
>gi|239747174 PREDICTED: hypothetical protein XP_002343931, partial
[Homo sapiens]
Length = 213
Score = 59.7 bits (143), Expect = 4e-09
Identities = 33/76 (43%), Positives = 45/76 (59%), Gaps = 6/76 (7%)
Query: 119 RAREGLRNMGLSPPASSTSTSSTCRAEAPRDRDRDRDRDRERDRERER------ERERER 172
R RE R + S + +E R RDR+R+R+R+RDRERE+ ER+RER
Sbjct: 19 RQRERRRETDRERDRAKESKTEDRHSERDRQRDRERNRERDRDREREKQTDREGERQRER 78
Query: 173 ERERERERGTSRVDDK 188
ER+R+R+R T R DK
Sbjct: 79 ERDRDRQRETERERDK 94
Score = 56.2 bits (134), Expect = 5e-08
Identities = 26/65 (40%), Positives = 41/65 (63%)
Query: 145 EAPRDRDRDRDRDRERDRERERERERERERERERERGTSRVDDKPSSPGDSSKKRGPKPR 204
E RDR+R++ DRE +R+RERER+R+R+RE ERER R D+ + +K+ +
Sbjct: 57 ERDRDREREKQTDREGERQRERERDRDRQRETERERDKERETDRHTETDRERQKQKEREM 116
Query: 205 KELPD 209
+ + D
Sbjct: 117 ERVRD 121
Score = 54.3 bits (129), Expect = 2e-07
Identities = 44/133 (33%), Positives = 61/133 (45%), Gaps = 14/133 (10%)
Query: 59 EREREMELYGPKKRGPKPKTFLLKAQAKAKAKTYEFRSDSARGIRIPYPGRSPQDLASTS 118
+R+RE E K+R T + + K K + E D R + GR Q T
Sbjct: 83 DRQRETERERDKERETDRHTETDRERQKQKEREMERVRDRERE-KQKEMGRERQTDRETD 141
Query: 119 RAREGLRNMGLSPPASSTSTSSTCRAEAPRDRDRDRDRDRERDRERER---ERERERERE 175
R RE + T R DR R+R+R+R+R+RER+R ERER + E
Sbjct: 142 RERE----------RQAERERETGRERKTEDRHRERERERKRERERKRETKERERHTDME 191
Query: 176 RERERGTSRVDDK 188
RER+R T R D+
Sbjct: 192 RERQRETDRKRDR 204
Score = 48.9 bits (115), Expect = 8e-06
Identities = 25/64 (39%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 145 EAPRDRDRDRDRD--RERDRERERERERERERERERERGTSRVDDKPSSPGDSSKKRGPK 202
E RDR+R++ ++ RER +RE +RERER+ ERERE G R + + +KR +
Sbjct: 117 ERVRDREREKQKEMGRERQTDRETDRERERQAERERETGRERKTEDRHRERERERKRERE 176
Query: 203 PRKE 206
++E
Sbjct: 177 RKRE 180
Score = 47.4 bits (111), Expect = 2e-05
Identities = 19/44 (43%), Positives = 32/44 (72%)
Query: 145 EAPRDRDRDRDRDRERDRERERERERERERERERERGTSRVDDK 188
E RDR R+ +R+R+++RE +R E +RER++++ER RV D+
Sbjct: 79 ERDRDRQRETERERDKERETDRHTETDRERQKQKEREMERVRDR 122
Score = 47.4 bits (111), Expect = 2e-05
Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 9/68 (13%)
Query: 145 EAPRDRDRDRDRDRERDRERERERERE------RERERERERGTSRVDDKPSSPGDSSKK 198
E RD++R+ DR E DRER++++ERE RERE+++E G R D+ + D ++
Sbjct: 89 ERERDKERETDRHTETDRERQKQKEREMERVRDREREKQKEMGRERQTDRET---DRERE 145
Query: 199 RGPKPRKE 206
R + +E
Sbjct: 146 RQAERERE 153
Score = 47.4 bits (111), Expect = 2e-05
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 145 EAPRDRDRDRDRDRERDRER---ERERERERERERERERGTSRVDDKPSSPGDSSKKRGP 201
E R+R+R +R+RE RER +R RERERER+RERER + + + + ++R
Sbjct: 139 ETDRERERQAERERETGRERKTEDRHRERERERKRERERKRETKERERHTDMERERQRET 198
Query: 202 KPRKELPDPSQR 213
+++ S+R
Sbjct: 199 DRKRDRQRESER 210
Score = 47.0 bits (110), Expect = 3e-05
Identities = 25/65 (38%), Positives = 35/65 (53%)
Query: 145 EAPRDRDRDRDRDRERDRERERERERERERERERERGTSRVDDKPSSPGDSSKKRGPKPR 204
E ++ R+R DRE DRERER+ ERERE RER+ + + + +KR K R
Sbjct: 125 EKQKEMGRERQTDRETDRERERQAERERETGRERKTEDRHRERERERKRERERKRETKER 184
Query: 205 KELPD 209
+ D
Sbjct: 185 ERHTD 189
Score = 46.6 bits (109), Expect = 4e-05
Identities = 20/46 (43%), Positives = 31/46 (67%)
Query: 148 RDRDRDRDRDRERDRERERERERERERERERERGTSRVDDKPSSPG 193
R+ +R+RD++RE DR E +RER++++ERE ER R +K G
Sbjct: 86 RETERERDKERETDRHTETDRERQKQKEREMERVRDREREKQKEMG 131
Score = 46.2 bits (108), Expect = 5e-05
Identities = 21/57 (36%), Positives = 35/57 (61%)
Query: 149 DRDRDRDRDRERDRERERERERERERERERERGTSRVDDKPSSPGDSSKKRGPKPRK 205
DR +RDR R+R+R RER+R+RERE++ +RE R ++ +++ K R+
Sbjct: 41 DRHSERDRQRDRERNRERDRDREREKQTDREGERQRERERDRDRQRETERERDKERE 97
Score = 45.8 bits (107), Expect = 7e-05
Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 22/83 (26%)
Query: 145 EAPRDRDRDRDRDRERDRERE----------------------RERERERERERERERGT 182
E RDRDR R+ +RERD+ERE R+RERE+++E RER T
Sbjct: 77 ERERDRDRQRETERERDKERETDRHTETDRERQKQKEREMERVRDREREKQKEMGRERQT 136
Query: 183 SRVDDKPSSPGDSSKKRGPKPRK 205
R D+ ++ + RK
Sbjct: 137 DRETDRERERQAERERETGRERK 159
Score = 43.1 bits (100), Expect = 4e-04
Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 17/72 (23%)
Query: 134 SSTSTSSTCRAEAPRDRDRDRDRD-----------------RERDRERERERERERERER 176
S T T DR R+R R+ ERDR+R+RER RER+R+R
Sbjct: 3 SKTEGRHTHTETETMDRQRERRRETDRERDRAKESKTEDRHSERDRQRDRERNRERDRDR 62
Query: 177 ERERGTSRVDDK 188
ERE+ T R ++
Sbjct: 63 EREKQTDREGER 74
Score = 43.1 bits (100), Expect = 4e-04
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 12/61 (19%)
Query: 151 DRDRDRDRERDRERER-----------ERERERERERERERGTSRVDDKPSS-PGDSSKK 198
DR R+R RE DRER+R ER+R+R+RER RER R +K + G+ ++
Sbjct: 18 DRQRERRRETDRERDRAKESKTEDRHSERDRQRDRERNRERDRDREREKQTDREGERQRE 77
Query: 199 R 199
R
Sbjct: 78 R 78
Score = 38.1 bits (87), Expect = 0.014
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 7/64 (10%)
Query: 153 DRDRDRERDRERERER-------ERERERERERERGTSRVDDKPSSPGDSSKKRGPKPRK 205
DR R+R R+ +RER+R +R ER+R+R+R +R D+ + + G + R+
Sbjct: 18 DRQRERRRETDRERDRAKESKTEDRHSERDRQRDRERNRERDRDREREKQTDREGERQRE 77
Query: 206 ELPD 209
D
Sbjct: 78 RERD 81
>gi|41327773 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Homo
sapiens]
Length = 1031
Score = 58.5 bits (140), Expect = 1e-08
Identities = 49/161 (30%), Positives = 69/161 (42%), Gaps = 12/161 (7%)
Query: 95 RSDSARGIRIPYPGRSPQDLASTSRAREGLRNMGLSPPASSTSTSSTCRAEAPRDRDRDR 154
RS S R P RS + SR+R+ R S + S R R R R+R
Sbjct: 17 RSGSRSRSRSPSDKRSKRGDDRRSRSRDRDRRRERSRSRDKRRSRSRDRKRLRRSRSRER 76
Query: 155 DRDRERDRERERERERERERERERERGTSRVDDKPSSPGDSSKKRGPKPRKELPDPSQRP 214
DR RER R R R+R R R R R R + SSPG+ SKK + R + ++
Sbjct: 77 DRSRERRRSRSRDRRRSRSRSRGRR-------SRSSSPGNKSKKTENRSRSK-----EKT 124
Query: 215 LGEPSAGLGEYLKGRKLDDTPSGAGKFPAGHSVIQLARRQD 255
G S+ + K K D+ AG F ++ +R++
Sbjct: 125 DGGESSKEKKKDKDDKEDEKEKDAGNFDQNKLEEEMRKRKE 165
Score = 36.6 bits (83), Expect = 0.040
Identities = 26/114 (22%), Positives = 57/114 (50%), Gaps = 2/114 (1%)
Query: 118 SRAREGLRNMGLSPPASSTSTSSTCRAEAPRDRDRDRDRDRERDRERERERERERERERE 177
SR+R+ R+ S S S+S +++ +R R +++ + +E++++++ ++E E
Sbjct: 85 SRSRDRRRSRSRSRGRRSRSSSPGNKSKKTENRSRSKEKTDGGESSKEKKKDKD-DKEDE 143
Query: 178 RERGTSRVD-DKPSSPGDSSKKRGPKPRKELPDPSQRPLGEPSAGLGEYLKGRK 230
+E+ D +K K+R K R+E + +GE + E +G+K
Sbjct: 144 KEKDAGNFDQNKLEEEMRKRKERVEKWREEQRKKAMENIGELKKEIEEMKQGKK 197
Score = 29.3 bits (64), Expect = 6.3
Identities = 16/46 (34%), Positives = 19/46 (41%)
Query: 168 RERERERERERERGTSRVDDKPSSPGDSSKKRGPKPRKELPDPSQR 213
RE R+R RG S + SP D KRG R D +R
Sbjct: 3 RESRHYRKRSASRGRSGSRSRSRSPSDKRSKRGDDRRSRSRDRDRR 48
>gi|94536805 splicing factor YT521-B isoform 2 [Homo sapiens]
Length = 709
Score = 58.5 bits (140), Expect = 1e-08
Identities = 27/46 (58%), Positives = 34/46 (73%)
Query: 143 RAEAPRDRDRDRDRDRERDRERERERERERERERERERGTSRVDDK 188
R PR+RDR+R+RDR RD R+RER+R R+RERERER R D+
Sbjct: 656 RRSRPRERDRERERDRPRDNRRDRERDRGRDRERERERLCDRDRDR 701
Score = 55.1 bits (131), Expect = 1e-07
Identities = 25/52 (48%), Positives = 35/52 (67%)
Query: 148 RDRDRDRDRDRERDRERERERERERERERERERGTSRVDDKPSSPGDSSKKR 199
R R R+RDR+RERDR R+ R+RER+R R+RER R+ D+ G+ + R
Sbjct: 657 RSRPRERDRERERDRPRDNRRDRERDRGRDRERERERLCDRDRDRGERGRYR 708
Score = 52.8 bits (125), Expect = 5e-07
Identities = 25/37 (67%), Positives = 29/37 (78%)
Query: 145 EAPRDRDRDRDRDRERDRERERERERERERERERERG 181
E RDR RD RDRERDR R+RERERER +R+R+RG
Sbjct: 666 ERERDRPRDNRRDRERDRGRDRERERERLCDRDRDRG 702
Score = 29.6 bits (65), Expect = 4.9
Identities = 37/166 (22%), Positives = 62/166 (37%), Gaps = 28/166 (16%)
Query: 45 EENILDARLLAAFEEREREMELYGPKKRGPKPKTFLLKAQAKAKAKTYEFRSDSARGIRI 104
E N+LD L E E++ ELY P+ Q K + K + +SD
Sbjct: 12 ELNVLDDILT---EVPEQDDELYNPESE-----------QDKNEKKGSKRKSDR------ 51
Query: 105 PYPGRSPQDLASTSRAREGLRNMGLSPPASSTSTSSTCRAEAPRDRDRDRDRDRERDRER 164
+ T R + + + L S+S S+ R + + + ++ E R
Sbjct: 52 -------MESTDTKRQKPSVHSRQLVSKPLSSSVSNNKRIVSTKGKSATEYKNEEYQRS- 103
Query: 165 ERERERERERERERERGTSRVDDKPSSPGDSSKKRGPKPRKELPDP 210
ER + + +R+ SR K +KR P+ R + P P
Sbjct: 104 ERNKRLDADRKIRLSSSASREPYKNQPEKTCVRKRDPERRAKSPTP 149
Score = 29.3 bits (64), Expect = 6.3
Identities = 25/115 (21%), Positives = 41/115 (35%), Gaps = 9/115 (7%)
Query: 85 AKAKAKTYEFRSDSARGIRIPYPGRSPQDLASTSRAREGLRNMGLSPPASSTSTSSTCRA 144
+K + + E+ SD G G S + +T EG+
Sbjct: 170 SKEEVNSEEYGSDHETGSS----GSSDEQGNNTENEEEGVEE----DVEEDEEVEEDAEE 221
Query: 145 EAPRDRDRDRDRDRERDRERERERERERERERERERGTSRVD-DKPSSPGDSSKK 198
+ D D + + + E + E E E E E + ER++ D D S DS +
Sbjct: 222 DEEVDEDGEEEEEEEEEEEEEEEEEEEEYEQDERDQKEEGNDYDTRSEASDSGSE 276
>gi|72534750 splicing factor YT521-B isoform 1 [Homo sapiens]
Length = 727
Score = 58.5 bits (140), Expect = 1e-08
Identities = 27/46 (58%), Positives = 34/46 (73%)
Query: 143 RAEAPRDRDRDRDRDRERDRERERERERERERERERERGTSRVDDK 188
R PR+RDR+R+RDR RD R+RER+R R+RERERER R D+
Sbjct: 674 RRSRPRERDRERERDRPRDNRRDRERDRGRDRERERERLCDRDRDR 719
Score = 55.1 bits (131), Expect = 1e-07
Identities = 25/52 (48%), Positives = 35/52 (67%)
Query: 148 RDRDRDRDRDRERDRERERERERERERERERERGTSRVDDKPSSPGDSSKKR 199
R R R+RDR+RERDR R+ R+RER+R R+RER R+ D+ G+ + R
Sbjct: 675 RSRPRERDRERERDRPRDNRRDRERDRGRDRERERERLCDRDRDRGERGRYR 726
Score = 52.8 bits (125), Expect = 5e-07
Identities = 25/37 (67%), Positives = 29/37 (78%)
Query: 145 EAPRDRDRDRDRDRERDRERERERERERERERERERG 181
E RDR RD RDRERDR R+RERERER +R+R+RG
Sbjct: 684 ERERDRPRDNRRDRERDRGRDRERERERLCDRDRDRG 720
Score = 29.6 bits (65), Expect = 4.9
Identities = 37/166 (22%), Positives = 62/166 (37%), Gaps = 28/166 (16%)
Query: 45 EENILDARLLAAFEEREREMELYGPKKRGPKPKTFLLKAQAKAKAKTYEFRSDSARGIRI 104
E N+LD L E E++ ELY P+ Q K + K + +SD
Sbjct: 12 ELNVLDDILT---EVPEQDDELYNPESE-----------QDKNEKKGSKRKSDR------ 51
Query: 105 PYPGRSPQDLASTSRAREGLRNMGLSPPASSTSTSSTCRAEAPRDRDRDRDRDRERDRER 164
+ T R + + + L S+S S+ R + + + ++ E R
Sbjct: 52 -------MESTDTKRQKPSVHSRQLVSKPLSSSVSNNKRIVSTKGKSATEYKNEEYQRS- 103
Query: 165 ERERERERERERERERGTSRVDDKPSSPGDSSKKRGPKPRKELPDP 210
ER + + +R+ SR K +KR P+ R + P P
Sbjct: 104 ERNKRLDADRKIRLSSSASREPYKNQPEKTCVRKRDPERRAKSPTP 149
Score = 29.3 bits (64), Expect = 6.3
Identities = 25/115 (21%), Positives = 41/115 (35%), Gaps = 9/115 (7%)
Query: 85 AKAKAKTYEFRSDSARGIRIPYPGRSPQDLASTSRAREGLRNMGLSPPASSTSTSSTCRA 144
+K + + E+ SD G G S + +T EG+
Sbjct: 170 SKEEVNSEEYGSDHETGSS----GSSDEQGNNTENEEEGVEE----DVEEDEEVEEDAEE 221
Query: 145 EAPRDRDRDRDRDRERDRERERERERERERERERERGTSRVD-DKPSSPGDSSKK 198
+ D D + + + E + E E E E E + ER++ D D S DS +
Sbjct: 222 DEEVDEDGEEEEEEEEEEEEEEEEEEEEYEQDERDQKEEGNDYDTRSEASDSGSE 276
>gi|5803076 heterochromatin protein 1-beta [Homo sapiens]
Length = 185
Score = 58.2 bits (139), Expect = 1e-08
Identities = 25/55 (45%), Positives = 39/55 (70%)
Query: 8 ERVFAAEALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENILDARLLAAFEERER 62
E + E +L RR+ KG++EYL+KWKG+S + +TWEPEEN+ L+A F + ++
Sbjct: 18 EEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQSQK 72
>gi|187960037 heterochromatin protein 1-beta [Homo sapiens]
Length = 185
Score = 58.2 bits (139), Expect = 1e-08
Identities = 25/55 (45%), Positives = 39/55 (70%)
Query: 8 ERVFAAEALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENILDARLLAAFEERER 62
E + E +L RR+ KG++EYL+KWKG+S + +TWEPEEN+ L+A F + ++
Sbjct: 18 EEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQSQK 72
>gi|71044479 death inducer-obliterator 1 isoform c [Homo sapiens]
Length = 2240
Score = 57.8 bits (138), Expect = 2e-08
Identities = 54/164 (32%), Positives = 75/164 (45%), Gaps = 18/164 (10%)
Query: 57 FEEREREMELYGPKKRGPKPKTFLLKAQAKAKAKTYEFRSDSARGIRIPYPGRSPQDLAS 116
FE R+RE GPK+ KP L + A+ +A + R + RG R+
Sbjct: 2083 FEGRQRERFDVGPKE---KP---LEEPDAQGRASE-DRRRERERG-------RNWSRERD 2128
Query: 117 TSRAREGLRNMGLSPPASSTSTSSTCRAEAPRDRDRDRDRDRERDRERERERERERERER 176
R RE R+ SS A RDR+R+ DR +E DR RER R RERER+R
Sbjct: 2129 WDRPREWDRHRDKD---SSRDWDRNRERSANRDREREADRGKEWDRSRERSRNRERERDR 2185
Query: 177 ERERGTSRVDDKPSSPG-DSSKKRGPKPRKELPDPSQRPLGEPS 219
R+R SR ++ D + R K R + + ++ P E S
Sbjct: 2186 RRDRDRSRSRERDRDKARDRERGRDRKDRSKSKESARDPKPEAS 2229
Score = 47.0 bits (110), Expect = 3e-05
Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 145 EAPRDRDRDRDRDRERDRERERER----ERERERERERERGTSRVDDKPSSPGDSSKKRG 200
++ RD DR+R+R RDRERE +R +R RER R RER R D+ S +
Sbjct: 2142 DSSRDWDRNRERSANRDREREADRGKEWDRSRERSRNRERERDRRRDRDRSRSRERDRDK 2201
Query: 201 PKPRKELPDPSQRPLGEPSA 220
+ R+ D R + SA
Sbjct: 2202 ARDRERGRDRKDRSKSKESA 2221
>gi|169167715 PREDICTED: hypothetical protein [Homo sapiens]
Length = 285
Score = 57.0 bits (136), Expect = 3e-08
Identities = 40/158 (25%), Positives = 66/158 (41%), Gaps = 17/158 (10%)
Query: 31 KWKGWSQKYSTWEPEENILDARLLAAFEEREREMELYGPKKRGPKPKTFLLKAQAKAKAK 90
+W+ +K W + + ER+ E E +KR + + + +
Sbjct: 100 RWRDRDRKRERWGDRDRETET-------ERQEERERQRDRKR----------EKDRERQR 142
Query: 91 TYEFRSDSARGIRIPYPGRSPQDLASTSRAREGLRNMGLSPPASSTSTSSTCRAEAPRDR 150
E D R I +++ T R R+ R R + R+R
Sbjct: 143 QREIGIDKDREIETEKDRDREREMGETERYRDRERERQKQRETRRDRDRERQREKEDRER 202
Query: 151 DRDRDRDRERDRERERERERERERERERERGTSRVDDK 188
DRDR ++RE+DR RERE R+R++ER+RER + D+
Sbjct: 203 DRDRQKEREKDRYRERETGRDRDKERDRERQREKDRDR 240
Score = 53.1 bits (126), Expect = 4e-07
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 7/72 (9%)
Query: 145 EAPRDRDRDRDRDRERDRERERERERERERERERERGTSRVDDKPSSPGDSSKKRGPKPR 204
E +DRDR R RDRER R R+R+R+RER +R+RE T R +++ ++R K
Sbjct: 83 EIEKDRDRQRKRDRERQRWRDRDRKRERWGDRDRETETERQEER-------ERQRDRKRE 135
Query: 205 KELPDPSQRPLG 216
K+ QR +G
Sbjct: 136 KDRERQRQREIG 147
Score = 49.7 bits (117), Expect = 5e-06
Identities = 48/166 (28%), Positives = 68/166 (40%), Gaps = 27/166 (16%)
Query: 55 AAFEEREREMELYGPKKRGPKPKTFLLKAQAKAKAKTYEFRSDSARGIRIPYPGRSPQDL 114
A ERER+ E +KR A+ + + K E D R + R Q
Sbjct: 55 AIIRERERQRERERQRKR----------AKERHREKDREIEKDRDRQRK---RDRERQRW 101
Query: 115 ASTSRAREGLRNMGLSPPASSTSTSSTCRAEAPRDRDRDRDRDRERDRERE------RER 168
R RE + T + + E R RDR R++DRER R+RE RE
Sbjct: 102 RDRDRKRERWGDR-------DRETETERQEERERQRDRKREKDRERQRQREIGIDKDREI 154
Query: 169 ERERERERERERG-TSRVDDKPSSPGDSSKKRGPKPRKELPDPSQR 213
E E++R+RERE G T R D+ + R + R+ + R
Sbjct: 155 ETEKDRDREREMGETERYRDRERERQKQRETRRDRDRERQREKEDR 200
Score = 46.2 bits (108), Expect = 5e-05
Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 145 EAPRDRDRDRDR-DRERDRERERERERERERERERERGTSRVDDKPSSPGDSSKKR 199
E +DRDR+R+ + ER R+RERER+++RE R+R+R R + D K+R
Sbjct: 155 ETEKDRDREREMGETERYRDRERERQKQRETRRDRDRERQREKEDRERDRDRQKER 210
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.131 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,299,961
Number of Sequences: 37866
Number of extensions: 995022
Number of successful extensions: 15513
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 435
Number of HSP's that attempted gapping in prelim test: 6590
Number of HSP's gapped (non-prelim): 4075
length of query: 389
length of database: 18,247,518
effective HSP length: 104
effective length of query: 285
effective length of database: 14,309,454
effective search space: 4078194390
effective search space used: 4078194390
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.