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Search of human proteins with 100913200
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|100913200 ephrin A4 isoform c [Homo sapiens]
(193 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|100913200 ephrin A4 isoform c [Homo sapiens] 411 e-115
gi|33359686 ephrin A4 isoform b [Homo sapiens] 339 1e-93
gi|4885197 ephrin A4 isoform a [Homo sapiens] 337 3e-93
gi|4503487 ephrin-A5 [Homo sapiens] 140 9e-34
gi|4826708 ephrin A3 [Homo sapiens] 139 1e-33
gi|33359682 ephrin A1 isoform a precursor [Homo sapiens] 127 4e-30
gi|27894381 ephrin-A2 precursor [Homo sapiens] 127 4e-30
gi|33359680 ephrin A1 isoform b precursor [Homo sapiens] 111 4e-25
gi|4503489 ephrin-B3 precursor [Homo sapiens] 59 2e-09
gi|4758250 ephrin B2 [Homo sapiens] 56 2e-08
gi|4758248 ephrin-B1 precursor [Homo sapiens] 52 2e-07
gi|19923345 RNA binding motif protein 12 [Homo sapiens] 31 0.57
gi|23510462 RNA binding motif protein 12 [Homo sapiens] 31 0.57
gi|30425394 hypothetical protein LOC128876 [Homo sapiens] 30 1.3
gi|42476193 transmembrane protein 66 [Homo sapiens] 30 1.7
gi|22749199 fragile X mental retardation 1 neighbor [Homo sapiens] 29 2.2
gi|130502162 RAS protein activator like 3 [Homo sapiens] 28 3.7
gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens] 28 4.8
gi|15826840 PTK7 protein tyrosine kinase 7 isoform a precursor [... 28 4.8
gi|22902130 PTK7 protein tyrosine kinase 7 isoform d precursor [... 28 4.8
gi|22902128 PTK7 protein tyrosine kinase 7 isoform c precursor [... 28 4.8
gi|22902126 PTK7 protein tyrosine kinase 7 isoform b precursor [... 28 4.8
gi|88501738 TRIO and F-actin binding protein isoform 6 [Homo sap... 28 4.8
gi|14790190 spen homolog, transcriptional regulator [Homo sapiens] 28 6.3
gi|32967601 ankyrin 3 isoform 1 [Homo sapiens] 27 8.3
>gi|100913200 ephrin A4 isoform c [Homo sapiens]
Length = 193
Score = 411 bits (1057), Expect = e-115
Identities = 193/193 (100%), Positives = 193/193 (100%)
Query: 1 MRLLPLLRTVLWAAFLGSPLRGGSSLRHVVYWNSSNPRLLRGDAVVELGLNDYLDIVCPH 60
MRLLPLLRTVLWAAFLGSPLRGGSSLRHVVYWNSSNPRLLRGDAVVELGLNDYLDIVCPH
Sbjct: 1 MRLLPLLRTVLWAAFLGSPLRGGSSLRHVVYWNSSNPRLLRGDAVVELGLNDYLDIVCPH 60
Query: 61 YEGPGPPEGPETFALYMVDWPGYESCQAEGPRAYKRWVCSLPFGHVQFSEKIQRFTPFSL 120
YEGPGPPEGPETFALYMVDWPGYESCQAEGPRAYKRWVCSLPFGHVQFSEKIQRFTPFSL
Sbjct: 61 YEGPGPPEGPETFALYMVDWPGYESCQAEGPRAYKRWVCSLPFGHVQFSEKIQRFTPFSL 120
Query: 121 GFEFLPGETYYYISVPTPESSGQCLRLQVSVCCKERNLPSHPKEPESSQDPLEEEGSLLP 180
GFEFLPGETYYYISVPTPESSGQCLRLQVSVCCKERNLPSHPKEPESSQDPLEEEGSLLP
Sbjct: 121 GFEFLPGETYYYISVPTPESSGQCLRLQVSVCCKERNLPSHPKEPESSQDPLEEEGSLLP 180
Query: 181 ALGVPIQTDKMEH 193
ALGVPIQTDKMEH
Sbjct: 181 ALGVPIQTDKMEH 193
>gi|33359686 ephrin A4 isoform b [Homo sapiens]
Length = 207
Score = 339 bits (869), Expect = 1e-93
Identities = 158/165 (95%), Positives = 159/165 (96%)
Query: 1 MRLLPLLRTVLWAAFLGSPLRGGSSLRHVVYWNSSNPRLLRGDAVVELGLNDYLDIVCPH 60
MRLLPLLRTVLWAAFLGSPLRGGSSLRHVVYWNSSNPRLLRGDAVVELGLNDYLDIVCPH
Sbjct: 1 MRLLPLLRTVLWAAFLGSPLRGGSSLRHVVYWNSSNPRLLRGDAVVELGLNDYLDIVCPH 60
Query: 61 YEGPGPPEGPETFALYMVDWPGYESCQAEGPRAYKRWVCSLPFGHVQFSEKIQRFTPFSL 120
YEGPGPPEGPETFALYMVDWPGYESCQAEGPRAYKRWVCSLPFGHVQFSEKIQRFTPFSL
Sbjct: 61 YEGPGPPEGPETFALYMVDWPGYESCQAEGPRAYKRWVCSLPFGHVQFSEKIQRFTPFSL 120
Query: 121 GFEFLPGETYYYISVPTPESSGQCLRLQVSVCCKERNLPSHPKEP 165
GFEFLPGETYYYISVPTPESSGQCLRLQVSVCCKER P+ P
Sbjct: 121 GFEFLPGETYYYISVPTPESSGQCLRLQVSVCCKERRARVLPRSP 165
>gi|4885197 ephrin A4 isoform a [Homo sapiens]
Length = 201
Score = 337 bits (865), Expect = 3e-93
Identities = 159/163 (97%), Positives = 159/163 (97%), Gaps = 1/163 (0%)
Query: 1 MRLLPLLRTVLWAAFLGSPLRGGSSLRHVVYWNSSNPRLLRGDAVVELGLNDYLDIVCPH 60
MRLLPLLRTVLWAAFLGSPLRGGSSLRHVVYWNSSNPRLLRGDAVVELGLNDYLDIVCPH
Sbjct: 1 MRLLPLLRTVLWAAFLGSPLRGGSSLRHVVYWNSSNPRLLRGDAVVELGLNDYLDIVCPH 60
Query: 61 YEGPGPPEGPETFALYMVDWPGYESCQAEGPRAYKRWVCSLPFGHVQFSEKIQRFTPFSL 120
YEGPGPPEGPETFALYMVDWPGYESCQAEGPRAYKRWVCSLPFGHVQFSEKIQRFTPFSL
Sbjct: 61 YEGPGPPEGPETFALYMVDWPGYESCQAEGPRAYKRWVCSLPFGHVQFSEKIQRFTPFSL 120
Query: 121 GFEFLPGETYYYISVPTPESSGQCLRLQVSVCCKERNLPS-HP 162
GFEFLPGETYYYISVPTPESSGQCLRLQVSVCCKER S HP
Sbjct: 121 GFEFLPGETYYYISVPTPESSGQCLRLQVSVCCKERKSESAHP 163
>gi|4503487 ephrin-A5 [Homo sapiens]
Length = 228
Score = 140 bits (352), Expect = 9e-34
Identities = 72/156 (46%), Positives = 98/156 (62%), Gaps = 6/156 (3%)
Query: 1 MRLLPLLRTVLW-AAFLGSPLRGGSSLRHVVYWNSSNPRLLRGDAVVELGLNDYLDIVCP 59
+ +L L+ VLW F P + R+ VYWNSSNPR RGD +++ +NDYLD+ CP
Sbjct: 4 VEMLTLVFLVLWMCVFSQDPGSKAVADRYAVYWNSSNPRFQRGDYHIDVCINDYLDVFCP 63
Query: 60 HYEGPGPPEGPETFALYMVDWPGYESCQAEGPRAYKRWVCSLPF---GHVQFSEKIQRFT 116
HYE P + E + LYMV++ GY +C + +KRW C+ P G ++FSEK Q FT
Sbjct: 64 HYEDSVPEDKTERYVLYMVNFDGYSACD-HTSKGFKRWECNRPHSPNGPLKFSEKFQLFT 122
Query: 117 PFSLGFEFLPGETYYYISVPTPESSGQ-CLRLQVSV 151
PFSLGFEF PG Y+YIS P++ + CL+L+V V
Sbjct: 123 PFSLGFEFRPGREYFYISSAIPDNGRRSCLKLKVFV 158
>gi|4826708 ephrin A3 [Homo sapiens]
Length = 238
Score = 139 bits (350), Expect = 1e-33
Identities = 78/178 (43%), Positives = 98/178 (55%), Gaps = 19/178 (10%)
Query: 3 LLPLLRTVLWAAFLGSPLRGGSSLRHVVYWNSSNPRLLRGDAVVELGLNDYLDIVCPHYE 62
LL LL V L G RH VYWNSSN L R V++ +NDYLDI CPHY
Sbjct: 8 LLLLLVPVPLLPLLAQGPGGALGNRHAVYWNSSNQHLRREGYTVQVNVNDYLDIYCPHYN 67
Query: 63 --------GPGPPEGPETFALYMVDWPGYESCQAEGPRAYKRWVCS---LPFGHVQFSEK 111
GPGP G E + LYMV GY +C A + +KRW C+ P ++FSEK
Sbjct: 68 SSGVGPGAGPGPGGGAEQYVLYMVSRNGYRTCNAS--QGFKRWECNRPHAPHSPIKFSEK 125
Query: 112 IQRFTPFSLGFEFLPGETYYYISVPTPESSGQCLRLQVSVCCK------ERNLPSHPK 163
QR++ FSLG+EF G YYYIS PT +CLR++V VCC E+ +P+ P+
Sbjct: 126 FQRYSAFSLGYEFHAGHEYYYISTPTHNLHWKCLRMKVFVCCASTSHSGEKPVPTLPQ 183
>gi|33359682 ephrin A1 isoform a precursor [Homo sapiens]
Length = 205
Score = 127 bits (320), Expect = 4e-30
Identities = 67/163 (41%), Positives = 93/163 (57%), Gaps = 5/163 (3%)
Query: 11 LWAAFLGSPLRGGSSLRHVVYWNSSNPRLLRGDAVVELGLNDYLDIVCPHYEGPGPPEGP 70
LWA LG ++ RH V+WNSSNP+ D + + LNDY+DI+CPHYE +
Sbjct: 4 LWAPLLGLCCSLAAADRHTVFWNSSNPKFRNEDYTIHVQLNDYVDIICPHYEDHSVADAA 63
Query: 71 -ETFALYMVDWPGYESCQAEGPRAYKRWVCSLP---FGHVQFSEKIQRFTPFSLGFEFLP 126
E + LY+V+ Y+ CQ + + RW C+ P G + SEK QRFTPF+LG EF
Sbjct: 64 MEQYILYLVEHEEYQLCQPQS-KDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGKEFKE 122
Query: 127 GETYYYISVPTPESSGQCLRLQVSVCCKERNLPSHPKEPESSQ 169
G +YYYIS P + +CLRL+V+V K + P P+ +
Sbjct: 123 GHSYYYISKPIHQHEDRCLRLKVTVSGKITHSPQAHDNPQEKR 165
>gi|27894381 ephrin-A2 precursor [Homo sapiens]
Length = 213
Score = 127 bits (320), Expect = 4e-30
Identities = 75/164 (45%), Positives = 92/164 (56%), Gaps = 12/164 (7%)
Query: 24 SSLRHVVYWNSSNPRLLRGDA------VVELGLNDYLDIVCPHYEGPGPP-EGPETFALY 76
+S R+ VYWN SNPR G VE+ +NDYLDI CPHY P PP E E + LY
Sbjct: 33 NSDRYAVYWNRSNPRFHAGAGDDGGGYTVEVSINDYLDIYCPHYGAPLPPAERMEHYVLY 92
Query: 77 MVDWPGYESCQAEGPRAYKRWVCSLPF---GHVQFSEKIQRFTPFSLGFEFLPGETYYYI 133
MV+ G+ SC R +KRW C+ P G ++FSEK Q FTPFSLGFEF PG YYYI
Sbjct: 93 MVNGEGHASCDHR-QRGFKRWECNRPAAPGGPLKFSEKFQLFTPFSLGFEFRPGHEYYYI 151
Query: 134 SVPTPESSGQ-CLRLQVSVCCKERNLPSHPKEPESSQDPLEEEG 176
S P + + CLRL+V V L P+ +S + G
Sbjct: 152 SATPPNAVDRPCLRLKVYVRPTNETLYEAPEPIFTSNNSCSSPG 195
>gi|33359680 ephrin A1 isoform b precursor [Homo sapiens]
Length = 183
Score = 111 bits (277), Expect = 4e-25
Identities = 57/128 (44%), Positives = 76/128 (59%), Gaps = 5/128 (3%)
Query: 11 LWAAFLGSPLRGGSSLRHVVYWNSSNPRLLRGDAVVELGLNDYLDIVCPHYEGPGPPEGP 70
LWA LG ++ RH V+WNSSNP+ D + + LNDY+DI+CPHYE +
Sbjct: 4 LWAPLLGLCCSLAAADRHTVFWNSSNPKFRNEDYTIHVQLNDYVDIICPHYEDHSVADAA 63
Query: 71 -ETFALYMVDWPGYESCQAEGPRAYKRWVCSLP---FGHVQFSEKIQRFTPFSLGFEFLP 126
E + LY+V+ Y+ CQ + + RW C+ P G + SEK QRFTPF+LG EF
Sbjct: 64 MEQYILYLVEHEEYQLCQPQS-KDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGKEFKE 122
Query: 127 GETYYYIS 134
G +YYYIS
Sbjct: 123 GHSYYYIS 130
>gi|4503489 ephrin-B3 precursor [Homo sapiens]
Length = 340
Score = 59.3 bits (142), Expect = 2e-09
Identities = 49/159 (30%), Positives = 70/159 (44%), Gaps = 15/159 (9%)
Query: 30 VYWNSSNPRL-LRGDAVVELGLNDYLDIVCPHYEGPGPPEGP--ETFALYMVDWPGYESC 86
VYWNS+N R G V+ + D LD++CP PGP P E + LY+V C
Sbjct: 33 VYWNSANKRFQAEGGYVLYPQIGDRLDLLCPRARPPGPHSSPNYEFYKLYLVGGAQGRRC 92
Query: 87 QAEGPRAYKRWVCSLPFGHVQFSEKIQRFTPFSLGFEFLPGETYYYISVP--TPE----- 139
+A P C P ++F+ K Q ++P G EF YY I+ T E
Sbjct: 93 EAP-PAPNLLLTCDRPDLDLRFTIKFQEYSPNLWGHEFRSHHDYYIIATSDGTREGLESL 151
Query: 140 SSGQCLRLQVSVCCKERNLP---SHPKEPESSQDPLEEE 175
G CL + V + P + P++P S P+E +
Sbjct: 152 QGGVCLTRGMKVLLRVGQSPRGGAVPRKPVSEM-PMERD 189
>gi|4758250 ephrin B2 [Homo sapiens]
Length = 333
Score = 55.8 bits (133), Expect = 2e-08
Identities = 41/128 (32%), Positives = 60/128 (46%), Gaps = 5/128 (3%)
Query: 30 VYWNSSNPRLLRGDAVVELG-LNDYLDIVCPHYEGPGPPEGPETFALYMVDWPGYESCQA 88
+YWNSSN + L G +V + D LDI+CP + + E + +YMVD + C
Sbjct: 33 IYWNSSNSKFLPGQGLVLYPQIGDKLDIICPKVDSKTVGQY-EYYKVYMVDKDQADRCTI 91
Query: 89 EGPRAYKRWVCSLPFGHVQFSEKIQRFTPFSLGFEFLPGETYYYISVPTPESSGQCLRLQ 148
+ C+ P ++F+ K Q F+P G EF + YY IS T S + L Q
Sbjct: 92 KKENT-PLLNCAKPDQDIKFTIKFQEFSPNLWGLEFQKNKDYYIIS--TSNGSLEGLDNQ 148
Query: 149 VSVCCKER 156
C+ R
Sbjct: 149 EGGVCQTR 156
>gi|4758248 ephrin-B1 precursor [Homo sapiens]
Length = 346
Score = 52.4 bits (124), Expect = 2e-07
Identities = 47/156 (30%), Positives = 69/156 (44%), Gaps = 13/156 (8%)
Query: 6 LLRTVLWAAF-LGSPLRGGSSLRHVVYWNSSNPRLLRGDA-VVELGLNDYLDIVCPHYEG 63
L+ V+WA L +PL + V W+S NP+ L G V+ + D LDI+CP E
Sbjct: 13 LVAMVVWALCRLATPL---AKNLEPVSWSSLNPKFLSGKGLVIYPKIGDKLDIICPRAEA 69
Query: 64 PGPPEGPETFALYMVDWPGYESCQAE-GPRAYKRWVCSLPFGHVQFSEKIQRFTPFSLGF 122
P E + LY+V +C P C+ P ++F+ K Q F+P +G
Sbjct: 70 GRPYE---YYKLYLVRPEQAAACSTVLDPNVLV--TCNRPEQEIRFTIKFQEFSPNYMGL 124
Query: 123 EFLPGETYYYISVPTPESSGQCLRLQVSVCCKERNL 158
EF YY S T S + L + C+ R +
Sbjct: 125 EFKKHHDYYITS--TSNGSLEGLENREGGVCRTRTM 158
>gi|19923345 RNA binding motif protein 12 [Homo sapiens]
Length = 932
Score = 31.2 bits (69), Expect = 0.57
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 11/82 (13%)
Query: 63 GPGPPEGPETFALYMVDWPGYESCQAE-GPRAYKRWVCSLPFGHVQFSEKIQRFTPFSLG 121
GPGP GP +++ PG+ S + GP K V ++P F+ I F G
Sbjct: 826 GPGPGPGPGPGPIHIGGPPGFASSSGKPGPTVIK--VQNMP-----FTVSIDEILDFFYG 878
Query: 122 FEFLPGET---YYYISVPTPES 140
++ +PG Y +PT E+
Sbjct: 879 YQVIPGSVCLKYNEKGMPTGEA 900
>gi|23510462 RNA binding motif protein 12 [Homo sapiens]
Length = 932
Score = 31.2 bits (69), Expect = 0.57
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 11/82 (13%)
Query: 63 GPGPPEGPETFALYMVDWPGYESCQAE-GPRAYKRWVCSLPFGHVQFSEKIQRFTPFSLG 121
GPGP GP +++ PG+ S + GP K V ++P F+ I F G
Sbjct: 826 GPGPGPGPGPGPIHIGGPPGFASSSGKPGPTVIK--VQNMP-----FTVSIDEILDFFYG 878
Query: 122 FEFLPGET---YYYISVPTPES 140
++ +PG Y +PT E+
Sbjct: 879 YQVIPGSVCLKYNEKGMPTGEA 900
>gi|30425394 hypothetical protein LOC128876 [Homo sapiens]
Length = 747
Score = 30.0 bits (66), Expect = 1.3
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
Query: 10 VLWAAFLGSPLRGGSSLRHVVYWNSSNPRLLR--------GDAVVELGLNDYLDIVCPHY 61
VL A + PLRG + +W S+P +LR DA++E G YL ++
Sbjct: 9 VLGAQGMAGPLRGRVEELKLPWWRESSPLVLRHSEAARLAADALLERGEAAYLRVISEER 68
Query: 62 EGP 64
E P
Sbjct: 69 ELP 71
>gi|42476193 transmembrane protein 66 [Homo sapiens]
Length = 339
Score = 29.6 bits (65), Expect = 1.7
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 31 YWNSSNPRLLRGDAVVELGLNDYLDIVCPHYEGPGPPEGPETFALYMVDWPGYESCQAEG 90
Y +S + +LRG +E L DY ++ + G G +F+ Y W +SC G
Sbjct: 117 YESSEDQYVLRGSCGLEYNL-DYTELGLQKLKESGKQHGFASFSDYYYKWSSADSCNMSG 175
>gi|22749199 fragile X mental retardation 1 neighbor [Homo sapiens]
Length = 255
Score = 29.3 bits (64), Expect = 2.2
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 81 PGYESCQAEGP----RAYKRWVCSLPFGHVQFSEKIQRFTPFSLGFEFLPGETYYYIS-- 134
PGYE+ A+ P R + S PFG + S I F + L + G +Y+ ++
Sbjct: 43 PGYEAAMADRPQPGWRESLKMRVSKPFGMLMLSIWILLFVCYYLSYYLCSGSSYFVLANG 102
Query: 135 --VPTPESS-GQCL 145
+P E++ GQ L
Sbjct: 103 HILPNSENAHGQSL 116
>gi|130502162 RAS protein activator like 3 [Homo sapiens]
Length = 1011
Score = 28.5 bits (62), Expect = 3.7
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 133 ISVPTPESSGQCLRLQVSVCCKERNLPSHP-KEPESSQDPLEEEGSLLP 180
+S P ES LRL ++ + +N P P EPE LE E L P
Sbjct: 71 LSAPPKESRTSRLRLSKALWGRHKNPPPEPDPEPEQEAPELEPEPELEP 119
>gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens]
Length = 1682
Score = 28.1 bits (61), Expect = 4.8
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 63 GPGPPEGPETFALYMVDWPGYESCQAEGPRAY 94
GPGPP GP + A V PG A GPR +
Sbjct: 641 GPGPPPGPLSKAPQPVP-PGVGELPARGPRLF 671
>gi|15826840 PTK7 protein tyrosine kinase 7 isoform a precursor
[Homo sapiens]
Length = 1070
Score = 28.1 bits (61), Expect = 4.8
Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 126 PGETYYYISVPTPESSGQCLRLQVSVCCKERNLPSHPKEPESS 168
P TY + TP S GQ +V KERNL P PE S
Sbjct: 156 PRPTYQWFRDGTPLSDGQSNH---TVSSKERNLTLRPAGPEHS 195
>gi|22902130 PTK7 protein tyrosine kinase 7 isoform d precursor
[Homo sapiens]
Length = 1014
Score = 28.1 bits (61), Expect = 4.8
Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 126 PGETYYYISVPTPESSGQCLRLQVSVCCKERNLPSHPKEPESS 168
P TY + TP S GQ +V KERNL P PE S
Sbjct: 156 PRPTYQWFRDGTPLSDGQSNH---TVSSKERNLTLRPAGPEHS 195
>gi|22902128 PTK7 protein tyrosine kinase 7 isoform c precursor
[Homo sapiens]
Length = 940
Score = 28.1 bits (61), Expect = 4.8
Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 126 PGETYYYISVPTPESSGQCLRLQVSVCCKERNLPSHPKEPESS 168
P TY + TP S GQ +V KERNL P PE S
Sbjct: 156 PRPTYQWFRDGTPLSDGQSNH---TVSSKERNLTLRPAGPEHS 195
>gi|22902126 PTK7 protein tyrosine kinase 7 isoform b precursor
[Homo sapiens]
Length = 1030
Score = 28.1 bits (61), Expect = 4.8
Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 126 PGETYYYISVPTPESSGQCLRLQVSVCCKERNLPSHPKEPESS 168
P TY + TP S GQ +V KERNL P PE S
Sbjct: 156 PRPTYQWFRDGTPLSDGQSNH---TVSSKERNLTLRPAGPEHS 195
>gi|88501738 TRIO and F-actin binding protein isoform 6 [Homo sapiens]
Length = 2365
Score = 28.1 bits (61), Expect = 4.8
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 119 SLGFEFLPGETYYYISVPTPESSGQCLRLQVSVCCKERNLPSHPKEPESSQDP 171
SL F+ LP + + VP+ +S +C + VC R+ PS P + +P
Sbjct: 1133 SLLFQDLPRASTESL-VPSMDSLHECPHIPTPVCIGHRDAPSFSSPPRQAPEP 1184
>gi|14790190 spen homolog, transcriptional regulator [Homo sapiens]
Length = 3664
Score = 27.7 bits (60), Expect = 6.3
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 154 KERNLPSHPKEPESSQDPLEEEGSLLPALGVPIQT 188
K+ + +HPK PES+ + + E P++G P T
Sbjct: 1609 KQEDTENHPKTPESAPENKDSELKTPPSVGPPSVT 1643
>gi|32967601 ankyrin 3 isoform 1 [Homo sapiens]
Length = 4377
Score = 27.3 bits (59), Expect = 8.3
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 148 QVSVCCKERNLPSHPKEPESSQD 170
Q +VC LP+H KE ES QD
Sbjct: 1426 QTAVCNLNITLPAHKKETESDQD 1448
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.140 0.453
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,914,561
Number of Sequences: 37866
Number of extensions: 535766
Number of successful extensions: 1316
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1284
Number of HSP's gapped (non-prelim): 26
length of query: 193
length of database: 18,247,518
effective HSP length: 97
effective length of query: 96
effective length of database: 14,574,516
effective search space: 1399153536
effective search space used: 1399153536
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.