BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|186928854 mitochondrial ribosomal protein S31 [Homo sapiens] (395 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|186928854 mitochondrial ribosomal protein S31 [Homo sapiens] 786 0.0 gi|32967601 ankyrin 3 isoform 1 [Homo sapiens] 38 0.018 gi|168823435 hypothetical protein LOC79747 [Homo sapiens] 38 0.018 gi|50658065 SMC4 structural maintenance of chromosomes 4-like 1 ... 36 0.053 gi|50658063 SMC4 structural maintenance of chromosomes 4-like 1 ... 36 0.053 gi|45439327 periplakin [Homo sapiens] 36 0.053 gi|87298937 centrosomal protein 110kDa [Homo sapiens] 36 0.053 gi|119466532 laminin alpha 2 subunit isoform b precursor [Homo s... 36 0.069 gi|28559088 laminin alpha 2 subunit isoform a precursor [Homo sa... 36 0.069 gi|55770888 early endosome antigen 1, 162kD [Homo sapiens] 35 0.090 gi|102467235 inner centromere protein antigens 135/155kDa isofor... 34 0.20 gi|102467242 inner centromere protein antigens 135/155kDa isofor... 34 0.20 gi|58197558 tudor domain containing 6 [Homo sapiens] 34 0.26 gi|60685227 SECIS binding protein 2-like [Homo sapiens] 34 0.26 gi|237681121 breast cancer 1, early onset isoform 3 [Homo sapiens] 33 0.45 gi|6552299 breast cancer 1, early onset isoform 1 [Homo sapiens] 33 0.45 gi|91208420 bassoon protein [Homo sapiens] 33 0.45 gi|223634014 solute carrier organic anion transporter family, me... 33 0.59 gi|223634012 solute carrier organic anion transporter family, me... 33 0.59 gi|6005820 solute carrier organic anion transporter family, memb... 33 0.59 gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo sa... 33 0.59 gi|37577287 syntaxin 2 isoform 1 [Homo sapiens] 33 0.59 gi|37577162 syntaxin 2 isoform 2 [Homo sapiens] 33 0.59 gi|41055989 M-phase phosphoprotein 8 [Homo sapiens] 32 0.76 gi|33620716 retinoblastoma-binding protein 6 isoform 2 [Homo sap... 32 0.76 gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo sap... 32 0.76 gi|115334679 retinoblastoma-binding protein 1 isoform III [Homo ... 32 0.76 gi|115334673 retinoblastoma-binding protein 1 isoform II [Homo s... 32 0.76 gi|115334677 retinoblastoma-binding protein 1 isoform I [Homo sa... 32 0.76 gi|4507525 translocation protein 1 [Homo sapiens] 32 0.76 >gi|186928854 mitochondrial ribosomal protein S31 [Homo sapiens] Length = 395 Score = 786 bits (2029), Expect = 0.0 Identities = 395/395 (100%), Positives = 395/395 (100%) Query: 1 MFPRVSTFLPLRPLSRHPLSSGSPETSAAAIMLLTVRHGTVRYRSSALLARTKNNIQRYF 60 MFPRVSTFLPLRPLSRHPLSSGSPETSAAAIMLLTVRHGTVRYRSSALLARTKNNIQRYF Sbjct: 1 MFPRVSTFLPLRPLSRHPLSSGSPETSAAAIMLLTVRHGTVRYRSSALLARTKNNIQRYF 60 Query: 61 GTNSVICSKKDKQSVRTEETSKETSESQDSEKENTKKDLLGIIKGMKVELSTVNVRTTKP 120 GTNSVICSKKDKQSVRTEETSKETSESQDSEKENTKKDLLGIIKGMKVELSTVNVRTTKP Sbjct: 61 GTNSVICSKKDKQSVRTEETSKETSESQDSEKENTKKDLLGIIKGMKVELSTVNVRTTKP 120 Query: 121 PKRRPLKSLEATLGRLRRATEYAPKKRIEPLSPELVAAASAVADSLPFDKQTTKSELLSQ 180 PKRRPLKSLEATLGRLRRATEYAPKKRIEPLSPELVAAASAVADSLPFDKQTTKSELLSQ Sbjct: 121 PKRRPLKSLEATLGRLRRATEYAPKKRIEPLSPELVAAASAVADSLPFDKQTTKSELLSQ 180 Query: 181 LQQHEEESRAQRDAKRPKISFSNIISDMKVARSATARVRSRPELRIQFDEGYDNYPGQEK 240 LQQHEEESRAQRDAKRPKISFSNIISDMKVARSATARVRSRPELRIQFDEGYDNYPGQEK Sbjct: 181 LQQHEEESRAQRDAKRPKISFSNIISDMKVARSATARVRSRPELRIQFDEGYDNYPGQEK 240 Query: 241 TDDLKKRKNIFTGKRLNIFDMMAVTKEAPETDTSPSLWDVEFAKQLATVNEQPLQNGFEE 300 TDDLKKRKNIFTGKRLNIFDMMAVTKEAPETDTSPSLWDVEFAKQLATVNEQPLQNGFEE Sbjct: 241 TDDLKKRKNIFTGKRLNIFDMMAVTKEAPETDTSPSLWDVEFAKQLATVNEQPLQNGFEE 300 Query: 301 LIQWTKEGKLWEFPINNEAGFDDDGSEFHEHIFLEKHLESFPKQGPIRHFMELVTCGLSK 360 LIQWTKEGKLWEFPINNEAGFDDDGSEFHEHIFLEKHLESFPKQGPIRHFMELVTCGLSK Sbjct: 301 LIQWTKEGKLWEFPINNEAGFDDDGSEFHEHIFLEKHLESFPKQGPIRHFMELVTCGLSK 360 Query: 361 NPYLSVKQKVEHIEWFRNYFNEKKDILKESNIQFN 395 NPYLSVKQKVEHIEWFRNYFNEKKDILKESNIQFN Sbjct: 361 NPYLSVKQKVEHIEWFRNYFNEKKDILKESNIQFN 395 >gi|32967601 ankyrin 3 isoform 1 [Homo sapiens] Length = 4377 Score = 37.7 bits (86), Expect = 0.018 Identities = 35/145 (24%), Positives = 63/145 (43%), Gaps = 8/145 (5%) Query: 9 LPLRPLSRHPLSSGSPETSAAAIMLLTVRHGTVRYRSSALLARTKNNIQRYFGTNSVICS 68 LP++ S ++ + T+ T TV+ R S L K++I+ + G + Sbjct: 3950 LPVKVRSTCVTTTTTTATTTTTTTTTTTTSCTVKVRKSQLKEVCKHSIEYFKGISGETLK 4009 Query: 69 KKDKQSVRTEETSKETSESQDSEKENTKKDLLGIIKGMKVELSTVNVRTTKPPKRRPLKS 128 D+ S ++ E S+ ++S NT L +G + ++T + R K + PLKS Sbjct: 4010 LVDRLSEEEKKMQSELSDEEESTSRNT--SLSETSRGGQPSVTTKSAR-DKKTEAAPLKS 4066 Query: 129 LEATLGRLRRATEYAPKKRIEPLSP 153 G +R++ +R P SP Sbjct: 4067 KSEKAGSEKRSS-----RRTGPQSP 4086 >gi|168823435 hypothetical protein LOC79747 [Homo sapiens] Length = 1667 Score = 37.7 bits (86), Expect = 0.018 Identities = 68/277 (24%), Positives = 112/277 (40%), Gaps = 51/277 (18%) Query: 68 SKKDKQSVRTEETSKETSESQDSEKENTKKDLLGIIKGMKVELSTVNVRTTKPPK----- 122 S+ K SV ++ T K +S SEKE T K+ + ++STV+ + P K Sbjct: 1308 SEGQKSSVTSKTTRKGKEKS--SEKEKTAKEKQA--PRFEPQISTVHPQQEDPNKPYWIL 1363 Query: 123 RRPLKSLEATLGRLRRATEYAPKKRIEPLSPELVAAASAVADSLP-------FDKQTTKS 175 R + E+ L +++ TE A + R + E A+ S F K+T+ + Sbjct: 1364 RLVTEHNESELFEVKKDTERADEIRAMKQAWETTEPGRAIKASQARLHYLSGFIKKTSDA 1423 Query: 176 ELL----SQLQQHEEESRAQRDAKRP--KISFSNIISDMKVARSATA---RVRSRPELR- 225 E SQ + EE A R K P K S + +M S +A + + LR Sbjct: 1424 ESPPISESQTKPKEEVETAARGVKEPNSKNSAGSESKEMTQTGSGSAVWKKWQLTKGLRD 1483 Query: 226 ----IQFDEGYDNYPGQEKTDDLKKRKNIFTGKRL--------------NIFDMMAVTKE 267 + G + PG+E+ + +++NI TG R + M +++ Sbjct: 1484 VAKSTSSESGGVSSPGKEEREQSTRKENIQTGPRTRSPTILETSPRLIRKALEFMDLSQY 1543 Query: 268 APETDTSPSLWDVEFAKQLATVNEQPLQNGFEELIQW 304 +TDT P L Q +N+Q EE+ Q+ Sbjct: 1544 VRKTDTDPLL-------QTDELNQQQAMQKAEEIHQF 1573 >gi|50658065 SMC4 structural maintenance of chromosomes 4-like 1 [Homo sapiens] Length = 1288 Score = 36.2 bits (82), Expect = 0.053 Identities = 37/179 (20%), Positives = 79/179 (44%), Gaps = 22/179 (12%) Query: 50 ARTKNNIQRYFGTNSVICSKKDKQSVRTEETS---KETSESQDSEKENTKKDLLGIIKGM 106 A++ N I N+ + +K+K+ + +E K+ ++ EKE+ +K+L+G K + Sbjct: 433 AKSNNIINETTTRNNALEKEKEKEEKKLKEVMDSLKQETQGLQKEKESREKELMGFSKSV 492 Query: 107 KVELSTVNVRTTKPPKRRPLKSLEATLGRLRRATEYAPKKRIEPLSPELVAAASAVADSL 166 S ++V ++ L+ L R A K + E + AAS Sbjct: 493 NEARSKMDVAQSE---------LDIYLSRHNTAVSQLTKAK------EALIAASETLKER 537 Query: 167 PFDKQTTKSELLSQLQQHEEESRAQRDAKRPKISFSNIISDM----KVARSATARVRSR 221 + + +L Q+ +E+ + + + + +F +++ D+ + A+S+ A RSR Sbjct: 538 KAAIRDIEGKLPQTEQELKEKEKELQKLTQEETNFKSLVHDLFQKVEEAKSSLAMNRSR 596 >gi|50658063 SMC4 structural maintenance of chromosomes 4-like 1 [Homo sapiens] Length = 1288 Score = 36.2 bits (82), Expect = 0.053 Identities = 37/179 (20%), Positives = 79/179 (44%), Gaps = 22/179 (12%) Query: 50 ARTKNNIQRYFGTNSVICSKKDKQSVRTEETS---KETSESQDSEKENTKKDLLGIIKGM 106 A++ N I N+ + +K+K+ + +E K+ ++ EKE+ +K+L+G K + Sbjct: 433 AKSNNIINETTTRNNALEKEKEKEEKKLKEVMDSLKQETQGLQKEKESREKELMGFSKSV 492 Query: 107 KVELSTVNVRTTKPPKRRPLKSLEATLGRLRRATEYAPKKRIEPLSPELVAAASAVADSL 166 S ++V ++ L+ L R A K + E + AAS Sbjct: 493 NEARSKMDVAQSE---------LDIYLSRHNTAVSQLTKAK------EALIAASETLKER 537 Query: 167 PFDKQTTKSELLSQLQQHEEESRAQRDAKRPKISFSNIISDM----KVARSATARVRSR 221 + + +L Q+ +E+ + + + + +F +++ D+ + A+S+ A RSR Sbjct: 538 KAAIRDIEGKLPQTEQELKEKEKELQKLTQEETNFKSLVHDLFQKVEEAKSSLAMNRSR 596 >gi|45439327 periplakin [Homo sapiens] Length = 1756 Score = 36.2 bits (82), Expect = 0.053 Identities = 38/142 (26%), Positives = 65/142 (45%), Gaps = 17/142 (11%) Query: 69 KKDKQSVRTEETSKETSESQDSEKENTKKDLLGI-IKGMKVELSTVNVRTTKPPKRRPLK 127 K K V+T+E +E + Q E TK+++ + K + + V++ + + + Sbjct: 1280 KDTKPQVQTKEVVQEILQFQ--EDPQTKEEVASLRAKLSEEQKKQVDLERERASQEEQIA 1337 Query: 128 SLEATLGRLRRATEYAPKKRIEPLSPELVAAASAVADSLP-----FDK--------QTTK 174 E L R++ R E P L A ASA A+S+ DK Q + Sbjct: 1338 RKEEELSRVKERVVQQEVVRYEE-EPGLRAEASAFAESIDVELRQIDKLRAELRRLQRRR 1396 Query: 175 SELLSQLQQHEEESRAQRDAKR 196 +EL QL++ E E +A+R+A+R Sbjct: 1397 TELERQLEELERERQARREAER 1418 >gi|87298937 centrosomal protein 110kDa [Homo sapiens] Length = 2325 Score = 36.2 bits (82), Expect = 0.053 Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 3/77 (3%) Query: 66 ICSKKDKQSVRTEETSKETSESQDSEKENTKKDLLGIIKGMKVELSTVNVRTTKPPKR-R 124 I S+ K++ ++ ++ +E Q + E KKDL G+I G++ L T+ + T+ R Sbjct: 581 ILSRIAKETEEIKDLEEQLTEGQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECR 640 Query: 125 PLKSLEATLGRLRRATE 141 L+ + TL L+R TE Sbjct: 641 KLRDEKETL--LQRLTE 655 >gi|119466532 laminin alpha 2 subunit isoform b precursor [Homo sapiens] Length = 3118 Score = 35.8 bits (81), Expect = 0.069 Identities = 47/203 (23%), Positives = 81/203 (39%), Gaps = 27/203 (13%) Query: 63 NSVICSKKDKQSVRTEETSKETSESQDSEKENTKKDLLG-IIKGMKVELSTVNVRTTKPP 121 N+++ + + T+ T+ QD+E+ NT+ LG IK + + VN + K Sbjct: 1641 NTLVTEMNELLTRATKVTADGEQTGQDAERTNTRAKSLGEFIKELARDAEAVNEKAIK-- 1698 Query: 122 KRRPLKSLEATLGRLRRATE---YAPKKRIEPLSPELVAAASAVADSLPFDKQTTKSELL 178 L TLG A E +K I+ + EL + D+ LL Sbjct: 1699 -------LNETLGTRDEAFERNLEGLQKEIDQMIKELRRKNLETQKEIAEDELVAAEALL 1751 Query: 179 SQLQQHEEESRA-----QRDAKRPKISFSNIISD-MKVARSATARVRSRPELRIQFDEGY 232 ++++ ESR ++D + + N + D + R AT ++R L F Sbjct: 1752 KKVKKLFGESRGENEEMEKDLREKLADYKNKVDDAWDLLREATDKIREANRL---FAVNQ 1808 Query: 233 DNYPGQEKTDDLKKRKNIFTGKR 255 N E KK++ + +GKR Sbjct: 1809 KNMTALE-----KKKEAVESGKR 1826 >gi|28559088 laminin alpha 2 subunit isoform a precursor [Homo sapiens] Length = 3122 Score = 35.8 bits (81), Expect = 0.069 Identities = 47/203 (23%), Positives = 81/203 (39%), Gaps = 27/203 (13%) Query: 63 NSVICSKKDKQSVRTEETSKETSESQDSEKENTKKDLLG-IIKGMKVELSTVNVRTTKPP 121 N+++ + + T+ T+ QD+E+ NT+ LG IK + + VN + K Sbjct: 1641 NTLVTEMNELLTRATKVTADGEQTGQDAERTNTRAKSLGEFIKELARDAEAVNEKAIK-- 1698 Query: 122 KRRPLKSLEATLGRLRRATE---YAPKKRIEPLSPELVAAASAVADSLPFDKQTTKSELL 178 L TLG A E +K I+ + EL + D+ LL Sbjct: 1699 -------LNETLGTRDEAFERNLEGLQKEIDQMIKELRRKNLETQKEIAEDELVAAEALL 1751 Query: 179 SQLQQHEEESRA-----QRDAKRPKISFSNIISD-MKVARSATARVRSRPELRIQFDEGY 232 ++++ ESR ++D + + N + D + R AT ++R L F Sbjct: 1752 KKVKKLFGESRGENEEMEKDLREKLADYKNKVDDAWDLLREATDKIREANRL---FAVNQ 1808 Query: 233 DNYPGQEKTDDLKKRKNIFTGKR 255 N E KK++ + +GKR Sbjct: 1809 KNMTALE-----KKKEAVESGKR 1826 >gi|55770888 early endosome antigen 1, 162kD [Homo sapiens] Length = 1411 Score = 35.4 bits (80), Expect = 0.090 Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 17/133 (12%) Query: 70 KDKQSVRTEETSKETSESQDS-EKENTKKDLLGI-IKGMKVELSTVNVRTTKPPKRRPLK 127 K + V+ E T KE E + S EKE L + + M+ +L + + T + + Sbjct: 898 KHQLQVQMENTLKEQKELKKSLEKEKEASHQLKLELNSMQEQL--IQAQNTLKQNEKEEQ 955 Query: 128 SLEATLGRLRRATEYAPKKRIEPLSPELVAAASAVADSLPFDKQTTKSELLSQLQQHEEE 187 L+ + L++++E KK+IE L EL A K+EL ++LQQ + Sbjct: 956 QLQGNINELKQSSEQK-KKQIEALQGELKIAV------------LQKTELENKLQQQLTQ 1002 Query: 188 SRAQRDAKRPKIS 200 + + A++ KIS Sbjct: 1003 AAQELAAEKEKIS 1015 >gi|102467235 inner centromere protein antigens 135/155kDa isoform 1 [Homo sapiens] Length = 918 Score = 34.3 bits (77), Expect = 0.20 Identities = 30/133 (22%), Positives = 57/133 (42%), Gaps = 3/133 (2%) Query: 69 KKDKQSVRTEETSKETSESQDSEKENTKKDLLGIIKGMKVELSTVNVRT---TKPPKRRP 125 +K++Q + +E + + + E K+ L +K + E ++ + K Sbjct: 536 EKERQRLENLRRKEEAEQLRRQKVEEDKRRRLEEVKLKREERLRKVLQARERVEQMKEEK 595 Query: 126 LKSLEATLGRLRRATEYAPKKRIEPLSPELVAAASAVADSLPFDKQTTKSELLSQLQQHE 185 K +E ++ TE A ++R+ + AAA + + KQ ++ L LQQ E Sbjct: 596 KKQIEQKFAQIDEKTEKAKEERLAEEKAKKKAAAKKMEEVEARRKQEEEARRLRWLQQEE 655 Query: 186 EESRAQRDAKRPK 198 EE R Q ++ K Sbjct: 656 EERRHQELLQKKK 668 >gi|102467242 inner centromere protein antigens 135/155kDa isoform 2 [Homo sapiens] Length = 914 Score = 34.3 bits (77), Expect = 0.20 Identities = 30/133 (22%), Positives = 57/133 (42%), Gaps = 3/133 (2%) Query: 69 KKDKQSVRTEETSKETSESQDSEKENTKKDLLGIIKGMKVELSTVNVRT---TKPPKRRP 125 +K++Q + +E + + + E K+ L +K + E ++ + K Sbjct: 532 EKERQRLENLRRKEEAEQLRRQKVEEDKRRRLEEVKLKREERLRKVLQARERVEQMKEEK 591 Query: 126 LKSLEATLGRLRRATEYAPKKRIEPLSPELVAAASAVADSLPFDKQTTKSELLSQLQQHE 185 K +E ++ TE A ++R+ + AAA + + KQ ++ L LQQ E Sbjct: 592 KKQIEQKFAQIDEKTEKAKEERLAEEKAKKKAAAKKMEEVEARRKQEEEARRLRWLQQEE 651 Query: 186 EESRAQRDAKRPK 198 EE R Q ++ K Sbjct: 652 EERRHQELLQKKK 664 >gi|58197558 tudor domain containing 6 [Homo sapiens] Length = 2096 Score = 33.9 bits (76), Expect = 0.26 Identities = 17/57 (29%), Positives = 32/57 (56%) Query: 55 NIQRYFGTNSVICSKKDKQSVRTEETSKETSESQDSEKENTKKDLLGIIKGMKVELS 111 N+ R FG S + + QS TEE ETS+SQ +E ++ L ++ ++++++ Sbjct: 430 NLNRVFGVQSCCLADRVLQSQATEEEEPETSQSQSPAEEVDEEISLPALRSIRLKMN 486 >gi|60685227 SECIS binding protein 2-like [Homo sapiens] Length = 1056 Score = 33.9 bits (76), Expect = 0.26 Identities = 29/154 (18%), Positives = 70/154 (45%), Gaps = 8/154 (5%) Query: 70 KDKQSVRTEETSKETSESQDSEKENTKKDLLGIIKGMKVELSTVNVR------TTKPPKR 123 + + + + E+ +E +E+ +++ EN ++ L + E S +N+ TT PKR Sbjct: 339 EQRNNSQDEDGFQELNENGNAKDENIQQKLSSKVLDDLPENSPINIVQTPIPITTSVPKR 398 Query: 124 RPLKSLEATLGRLRRATEYAPKKRIEPLSPELVAAASAVADSLPFDKQTTKSELLSQLQQ 183 + +A L A EY+ + E ++ A+ + P Q ++L+ L++ Sbjct: 399 AKSQKKKALAAALATAQEYSEISMEQKKLQEALSKAAGKKNKTPV--QLDLGDMLAALEK 456 Query: 184 HEEESRAQRDAKRPKISFSNIISDMKVARSATAR 217 ++ +A++ +S++ + + + +T R Sbjct: 457 QQQAMKARQITNTRPLSYTVVTAASFHTKDSTNR 490 >gi|237681121 breast cancer 1, early onset isoform 3 [Homo sapiens] Length = 1816 Score = 33.1 bits (74), Expect = 0.45 Identities = 53/244 (21%), Positives = 90/244 (36%), Gaps = 38/244 (15%) Query: 35 TVRHGTVRYRSSALLARTKNNIQRYFGT-----NSVICSKKDKQSVRTEET-------SK 82 + RH TV + L T+ N+ + N VI +K ++ +EET S Sbjct: 1194 STRHSTVA--TECLSKNTEENLLSLKNSLNDCSNQVILAKASQEHHLSEETKCSASLFSS 1251 Query: 83 ETSESQDSEKENTKKD--LLGIIKGMKVELSTVNVR--------------TTKPPKRRPL 126 + SE +D +D L+G K M+ + + V T + Sbjct: 1252 QCSELEDLTANTNTQDPFLIGSSKQMRHQSESQGVGLSDKELVSDDEERGTGLEENNQEE 1311 Query: 127 KSLEATLGRLRRATEYAPKKRIEPLSPELVAAASAVADSLPFDKQTTKSELLSQLQQHEE 186 +S+++ LG E E E + S+ +D L ++ T L +LQQ Sbjct: 1312 QSMDSNLGEAASGCES------ETSVSEDCSGLSSQSDILTTQQRDTMQHNLIKLQQEMA 1365 Query: 187 ESRA--QRDAKRPKISFSNIISDMKVARSATARVRSRPELRIQFDEGYDNYPGQEKTDDL 244 E A ++ +P S+ +IISD +S E + + YP + + L Sbjct: 1366 ELEAVLEQHGSQPSNSYPSIISDSSALEDLRNPEQSTSEKAVLTSQKSSEYPISQNPEGL 1425 Query: 245 KKRK 248 K Sbjct: 1426 SADK 1429 >gi|6552299 breast cancer 1, early onset isoform 1 [Homo sapiens] Length = 1863 Score = 33.1 bits (74), Expect = 0.45 Identities = 53/244 (21%), Positives = 90/244 (36%), Gaps = 38/244 (15%) Query: 35 TVRHGTVRYRSSALLARTKNNIQRYFGT-----NSVICSKKDKQSVRTEET-------SK 82 + RH TV + L T+ N+ + N VI +K ++ +EET S Sbjct: 1241 STRHSTVA--TECLSKNTEENLLSLKNSLNDCSNQVILAKASQEHHLSEETKCSASLFSS 1298 Query: 83 ETSESQDSEKENTKKD--LLGIIKGMKVELSTVNVR--------------TTKPPKRRPL 126 + SE +D +D L+G K M+ + + V T + Sbjct: 1299 QCSELEDLTANTNTQDPFLIGSSKQMRHQSESQGVGLSDKELVSDDEERGTGLEENNQEE 1358 Query: 127 KSLEATLGRLRRATEYAPKKRIEPLSPELVAAASAVADSLPFDKQTTKSELLSQLQQHEE 186 +S+++ LG E E E + S+ +D L ++ T L +LQQ Sbjct: 1359 QSMDSNLGEAASGCES------ETSVSEDCSGLSSQSDILTTQQRDTMQHNLIKLQQEMA 1412 Query: 187 ESRA--QRDAKRPKISFSNIISDMKVARSATARVRSRPELRIQFDEGYDNYPGQEKTDDL 244 E A ++ +P S+ +IISD +S E + + YP + + L Sbjct: 1413 ELEAVLEQHGSQPSNSYPSIISDSSALEDLRNPEQSTSEKAVLTSQKSSEYPISQNPEGL 1472 Query: 245 KKRK 248 K Sbjct: 1473 SADK 1476 >gi|91208420 bassoon protein [Homo sapiens] Length = 3926 Score = 33.1 bits (74), Expect = 0.45 Identities = 33/181 (18%), Positives = 71/181 (39%), Gaps = 3/181 (1%) Query: 13 PLSRHPLSSGSPETSAAAIMLLTVRHGTVRYRSSALLARTKNNIQRYFGTNSVICSKKDK 72 P P+ PET+ V+ G R + + + + ++ + Sbjct: 613 PTKAEPMPKPPPETTPTPATP-KVKSGVRRAEPATPVVKAVPEAPKGGEAEDLVGKPYSQ 671 Query: 73 QSVRTEETSKETSESQDSEKENTKKDLLGIIKGMKVELSTVNVRTTKPPKRRPLKSLEAT 132 + R+ ++ +T S D +++ ++ G+++ +L + V PP + + ++ Sbjct: 672 DASRSPQSLSDTGYSSDGIS-SSQSEITGVVQQEVEQLDSAGVTGPHPPSPSEIHKVGSS 730 Query: 133 LGRLRRATEYAPKKRIEPLSPELVAAASAVADSLPFDKQTTKS-ELLSQLQQHEEESRAQ 191 + L +A AP +R +PLS SL + S E L + + +E+S Sbjct: 731 MRPLLQAQGLAPSERSKPLSSGTGEEQKQRPHSLSITPEAFDSDEELEDILEEDEDSAEW 790 Query: 192 R 192 R Sbjct: 791 R 791 >gi|223634014 solute carrier organic anion transporter family, member 2B1 isoform 3 [Homo sapiens] Length = 565 Score = 32.7 bits (73), Expect = 0.59 Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 9/114 (7%) Query: 1 MFPRVSTFLPLRPLSRHPLSSGSP-ETSAAAIMLLTVRHGTVRYRSSALLARTKNNIQRY 59 MF R+ ++P P+ GS +T+ L R RY ++ LL +Q + Sbjct: 460 MFLRILAWMP------SPVIHGSAIDTTCVHWALSCGRRAVCRYYNNDLLRNRFIGLQFF 513 Query: 60 FGTNSVICSKKDKQSVRTEETSKETSESQDSEKENTKKDLLGIIKGMKVELSTV 113 F T SVIC +R ++ T ES+ S ++ LL G K E S V Sbjct: 514 FKTGSVICFALVLAVLRQQDKEARTKESRSSPA--VEQQLLVSGPGKKPEDSRV 565 >gi|223634012 solute carrier organic anion transporter family, member 2B1 isoform 2 [Homo sapiens] Length = 687 Score = 32.7 bits (73), Expect = 0.59 Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 9/114 (7%) Query: 1 MFPRVSTFLPLRPLSRHPLSSGSP-ETSAAAIMLLTVRHGTVRYRSSALLARTKNNIQRY 59 MF R+ ++P P+ GS +T+ L R RY ++ LL +Q + Sbjct: 582 MFLRILAWMP------SPVIHGSAIDTTCVHWALSCGRRAVCRYYNNDLLRNRFIGLQFF 635 Query: 60 FGTNSVICSKKDKQSVRTEETSKETSESQDSEKENTKKDLLGIIKGMKVELSTV 113 F T SVIC +R ++ T ES+ S ++ LL G K E S V Sbjct: 636 FKTGSVICFALVLAVLRQQDKEARTKESRSSPA--VEQQLLVSGPGKKPEDSRV 687 >gi|6005820 solute carrier organic anion transporter family, member 2B1 isoform 1 [Homo sapiens] Length = 709 Score = 32.7 bits (73), Expect = 0.59 Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 9/114 (7%) Query: 1 MFPRVSTFLPLRPLSRHPLSSGSP-ETSAAAIMLLTVRHGTVRYRSSALLARTKNNIQRY 59 MF R+ ++P P+ GS +T+ L R RY ++ LL +Q + Sbjct: 604 MFLRILAWMP------SPVIHGSAIDTTCVHWALSCGRRAVCRYYNNDLLRNRFIGLQFF 657 Query: 60 FGTNSVICSKKDKQSVRTEETSKETSESQDSEKENTKKDLLGIIKGMKVELSTV 113 F T SVIC +R ++ T ES+ S ++ LL G K E S V Sbjct: 658 FKTGSVICFALVLAVLRQQDKEARTKESRSSPA--VEQQLLVSGPGKKPEDSRV 709 >gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo sapiens] Length = 699 Score = 32.7 bits (73), Expect = 0.59 Identities = 41/203 (20%), Positives = 73/203 (35%), Gaps = 10/203 (4%) Query: 72 KQSVRTEETSKETSESQDSEKENTKKDLLGIIKGMKVELSTVNVRTTKPPKRRPLKSLEA 131 K R ++S ES SE+E TKK ++ K + +++ + P+ S ++ Sbjct: 415 KLLTRKADSSSSEEESSSSEEEKTKK-MVATTKPKATAKAALSLPAKQAPQGSRDSSSDS 473 Query: 132 TLGRLRRATEYAPKKRIEPLSPELVAAASAVADSLPFDK---QTTKSELLSQLQQHEEES 188 E K ++ P+ VA +A + K +++ S + EEE Sbjct: 474 DSSSSEEEEEKTSKSAVKK-KPQKVAGGAAPSKPASAKKGKAESSNSSSSDDSSEEEEEK 532 Query: 189 RAQRDAKRPKISFSNIISDMKVARSATARVRSRPELRIQFDEGYDNYPGQEKTDDLKKRK 248 + + RP+ +N S + A+ E +E K+ LKKRK Sbjct: 533 LKGKGSPRPQAPKANGTSALTAQNGKAAKNSEEEE-----EEKKKAAVVVSKSGSLKKRK 587 Query: 249 NIFTGKRLNIFDMMAVTKEAPET 271 K + + P T Sbjct: 588 QNEAAKEAETPQAKKIKLQTPNT 610 >gi|37577287 syntaxin 2 isoform 1 [Homo sapiens] Length = 287 Score = 32.7 bits (73), Expect = 0.59 Identities = 30/128 (23%), Positives = 57/128 (44%), Gaps = 12/128 (9%) Query: 106 MKVELSTVN--VRTTKPPKRRPLKSLEATLGRLRRATEYAPKKRIEP-----LSPELVAA 158 +K EL +N ++ T R LK++E + + + RI LS + V A Sbjct: 70 IKEELEDLNKEIKKTANKIRAKLKAIEQSFDQDESGNRTSVDLRIRRTQHSVLSRKFVEA 129 Query: 159 ASAVADSLPFDKQTTKSELLSQLQ-----QHEEESRAQRDAKRPKISFSNIISDMKVARS 213 + ++ ++ +K + QL+ ++E ++ +P I S+IISD ++ R Sbjct: 130 MAEYNEAQTLFRERSKGRIQRQLEITGRTTTDDELEEMLESGKPSIFTSDIISDSQITRQ 189 Query: 214 ATARVRSR 221 A + SR Sbjct: 190 ALNEIESR 197 >gi|37577162 syntaxin 2 isoform 2 [Homo sapiens] Length = 288 Score = 32.7 bits (73), Expect = 0.59 Identities = 30/128 (23%), Positives = 57/128 (44%), Gaps = 12/128 (9%) Query: 106 MKVELSTVN--VRTTKPPKRRPLKSLEATLGRLRRATEYAPKKRIEP-----LSPELVAA 158 +K EL +N ++ T R LK++E + + + RI LS + V A Sbjct: 70 IKEELEDLNKEIKKTANKIRAKLKAIEQSFDQDESGNRTSVDLRIRRTQHSVLSRKFVEA 129 Query: 159 ASAVADSLPFDKQTTKSELLSQLQ-----QHEEESRAQRDAKRPKISFSNIISDMKVARS 213 + ++ ++ +K + QL+ ++E ++ +P I S+IISD ++ R Sbjct: 130 MAEYNEAQTLFRERSKGRIQRQLEITGRTTTDDELEEMLESGKPSIFTSDIISDSQITRQ 189 Query: 214 ATARVRSR 221 A + SR Sbjct: 190 ALNEIESR 197 >gi|41055989 M-phase phosphoprotein 8 [Homo sapiens] Length = 860 Score = 32.3 bits (72), Expect = 0.76 Identities = 42/188 (22%), Positives = 75/188 (39%), Gaps = 26/188 (13%) Query: 71 DKQSVRTEETSKETSESQDSEKENTKKDLLGIIKGMKVELSTVNVRTTKPPKRRPLKSLE 130 D + R ++T ++ +++++ K K L E TV K + + Sbjct: 325 DVRGRRKKKTPRKAEDTRENRKLENKNAFL--------EKKTV----PKKQRNQDRSKSA 372 Query: 131 ATLGRLRRATEYAPKKRIEPLSPELVAAASAVADSLPFDKQTTKSELLSQLQQHEEESRA 190 A L +L + PK R LS E S DS DK+T ++E + Q+ + + Sbjct: 373 AELEKLMPVSAQTPKGR--RLSGEERGLWST--DSAEEDKETKRNESKEKYQKRHDSDKE 428 Query: 191 QRDAKRPK-----ISFSNIISDMKVA----RSATARVRSRPELRIQFDEGYDNYPGQEKT 241 ++ K PK N K+ + R R E+ + F + D++ +E Sbjct: 429 EKGRKEPKGLKTLKEIRNAFDLFKLTPEEKNDVSENNRKREEIPLDF-KTIDDHKTKENK 487 Query: 242 DDLKKRKN 249 LK+R+N Sbjct: 488 QSLKERRN 495 >gi|33620716 retinoblastoma-binding protein 6 isoform 2 [Homo sapiens] Length = 1758 Score = 32.3 bits (72), Expect = 0.76 Identities = 53/236 (22%), Positives = 96/236 (40%), Gaps = 32/236 (13%) Query: 69 KKDKQSVRTEETSKETSESQDSEKENTKKDLLGIIKGMKVELSTVNVRTTKPPKRRPLKS 128 ++DK + ++T ++ S S+KEN K G KV+ ++PP ++ + Sbjct: 974 ERDKPKAKGDKTKRKNDGSAVSKKENIVKPAKG--PQEKVDGERERSPRSEPPIKKAKEE 1031 Query: 129 L---------------EATLGRLRRATEYAPKKRIEPLSPELVAAASAVADSLPFDKQTT 173 E G R+A + K+ E + + + +K TT Sbjct: 1032 TPKTDNTKSSSSSQKDEKITGTPRKAHSKSAKEHQETKPVKEEKVKKDYSKDVKSEKLTT 1091 Query: 174 KSELLSQ-------LQQHEEESRAQRDAKRPKISFSNIISDMKVAR-SATARVRSRPELR 225 K E + L E+ + + + K F + S MK+++ T V+ P+ + Sbjct: 1092 KEEKAKKPNEKNKPLDNKGEKRKRKTEEKGVDKDFES--SSMKISKLEVTEIVKPSPKRK 1149 Query: 226 IQFD-EGYDNYPGQEK---TDDLKKRK-NIFTGKRLNIFDMMAVTKEAPETDTSPS 276 ++ D E D P ++K + KK K N TGK++ + ++ TKE E S S Sbjct: 1150 MEPDTEKMDRTPEKDKISLSAPAKKIKLNRETGKKIGSTENISNTKEPSEKLESTS 1205 >gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo sapiens] Length = 1792 Score = 32.3 bits (72), Expect = 0.76 Identities = 53/236 (22%), Positives = 96/236 (40%), Gaps = 32/236 (13%) Query: 69 KKDKQSVRTEETSKETSESQDSEKENTKKDLLGIIKGMKVELSTVNVRTTKPPKRRPLKS 128 ++DK + ++T ++ S S+KEN K G KV+ ++PP ++ + Sbjct: 1008 ERDKPKAKGDKTKRKNDGSAVSKKENIVKPAKG--PQEKVDGERERSPRSEPPIKKAKEE 1065 Query: 129 L---------------EATLGRLRRATEYAPKKRIEPLSPELVAAASAVADSLPFDKQTT 173 E G R+A + K+ E + + + +K TT Sbjct: 1066 TPKTDNTKSSSSSQKDEKITGTPRKAHSKSAKEHQETKPVKEEKVKKDYSKDVKSEKLTT 1125 Query: 174 KSELLSQ-------LQQHEEESRAQRDAKRPKISFSNIISDMKVAR-SATARVRSRPELR 225 K E + L E+ + + + K F + S MK+++ T V+ P+ + Sbjct: 1126 KEEKAKKPNEKNKPLDNKGEKRKRKTEEKGVDKDFES--SSMKISKLEVTEIVKPSPKRK 1183 Query: 226 IQFD-EGYDNYPGQEK---TDDLKKRK-NIFTGKRLNIFDMMAVTKEAPETDTSPS 276 ++ D E D P ++K + KK K N TGK++ + ++ TKE E S S Sbjct: 1184 MEPDTEKMDRTPEKDKISLSAPAKKIKLNRETGKKIGSTENISNTKEPSEKLESTS 1239 >gi|115334679 retinoblastoma-binding protein 1 isoform III [Homo sapiens] Length = 1188 Score = 32.3 bits (72), Expect = 0.76 Identities = 61/255 (23%), Positives = 101/255 (39%), Gaps = 22/255 (8%) Query: 71 DKQSVRTEETSKETSESQ---DSEKENTKKDLLGIIKGMKVELSTVNVRTTKPPKRRPLK 127 DK S EE S+E E++ DSE E ++D+ + G KV++ +T K +K Sbjct: 539 DKDSDEEEEKSQEREETESKCDSEGEEDEEDMEPCLTGTKVKVKYGRGKTQK-IYEASIK 597 Query: 128 SLEATLGRLRRATEYA--PKKRIEPLSPELVAAASAVADSLPFDKQTTKSELLSQLQQHE 185 S E G + Y + E + + + K+ K++ S+ + Sbjct: 598 STEIDDGEVLYLVHYYGWNVRYDEWVKADRIIWPLDKGGPKKKQKKKAKNKEDSEKDEKR 657 Query: 186 EESRAQRDAKRPKISFSNIISDMKVARSATARVRSRPELRIQFDEGYD----NYPGQEKT 241 +E R + RP + S + S+M S TA + + E D N +E + Sbjct: 658 DEERQKSKRGRPPLK-STLSSNMPYGLSKTANSEGKSDSCSSDSETEDALEKNLINEELS 716 Query: 242 --DDLKKRKNIFTGK--RLNIFDMMAVTKEAPETDTSPSLWDVEFAKQLATVNEQPLQ-- 295 D+L+K +N+ K N + KE T P +E K NEQ +Q Sbjct: 717 LKDELEKNENLNDDKLDEENPKISAHILKENDRTQMQP----LETLKLEVGENEQIVQIF 772 Query: 296 -NGFEELIQWTKEGK 309 N E+ + KE + Sbjct: 773 GNKMEKTEEVKKEAE 787 >gi|115334673 retinoblastoma-binding protein 1 isoform II [Homo sapiens] Length = 1203 Score = 32.3 bits (72), Expect = 0.76 Identities = 61/255 (23%), Positives = 101/255 (39%), Gaps = 22/255 (8%) Query: 71 DKQSVRTEETSKETSESQ---DSEKENTKKDLLGIIKGMKVELSTVNVRTTKPPKRRPLK 127 DK S EE S+E E++ DSE E ++D+ + G KV++ +T K +K Sbjct: 539 DKDSDEEEEKSQEREETESKCDSEGEEDEEDMEPCLTGTKVKVKYGRGKTQK-IYEASIK 597 Query: 128 SLEATLGRLRRATEYA--PKKRIEPLSPELVAAASAVADSLPFDKQTTKSELLSQLQQHE 185 S E G + Y + E + + + K+ K++ S+ + Sbjct: 598 STEIDDGEVLYLVHYYGWNVRYDEWVKADRIIWPLDKGGPKKKQKKKAKNKEDSEKDEKR 657 Query: 186 EESRAQRDAKRPKISFSNIISDMKVARSATARVRSRPELRIQFDEGYD----NYPGQEKT 241 +E R + RP + S + S+M S TA + + E D N +E + Sbjct: 658 DEERQKSKRGRPPLK-STLSSNMPYGLSKTANSEGKSDSCSSDSETEDALEKNLINEELS 716 Query: 242 --DDLKKRKNIFTGK--RLNIFDMMAVTKEAPETDTSPSLWDVEFAKQLATVNEQPLQ-- 295 D+L+K +N+ K N + KE T P +E K NEQ +Q Sbjct: 717 LKDELEKNENLNDDKLDEENPKISAHILKENDRTQMQP----LETLKLEVGENEQIVQIF 772 Query: 296 -NGFEELIQWTKEGK 309 N E+ + KE + Sbjct: 773 GNKMEKTEEVKKEAE 787 >gi|115334677 retinoblastoma-binding protein 1 isoform I [Homo sapiens] Length = 1257 Score = 32.3 bits (72), Expect = 0.76 Identities = 61/255 (23%), Positives = 101/255 (39%), Gaps = 22/255 (8%) Query: 71 DKQSVRTEETSKETSESQ---DSEKENTKKDLLGIIKGMKVELSTVNVRTTKPPKRRPLK 127 DK S EE S+E E++ DSE E ++D+ + G KV++ +T K +K Sbjct: 539 DKDSDEEEEKSQEREETESKCDSEGEEDEEDMEPCLTGTKVKVKYGRGKTQK-IYEASIK 597 Query: 128 SLEATLGRLRRATEYA--PKKRIEPLSPELVAAASAVADSLPFDKQTTKSELLSQLQQHE 185 S E G + Y + E + + + K+ K++ S+ + Sbjct: 598 STEIDDGEVLYLVHYYGWNVRYDEWVKADRIIWPLDKGGPKKKQKKKAKNKEDSEKDEKR 657 Query: 186 EESRAQRDAKRPKISFSNIISDMKVARSATARVRSRPELRIQFDEGYD----NYPGQEKT 241 +E R + RP + S + S+M S TA + + E D N +E + Sbjct: 658 DEERQKSKRGRPPLK-STLSSNMPYGLSKTANSEGKSDSCSSDSETEDALEKNLINEELS 716 Query: 242 --DDLKKRKNIFTGK--RLNIFDMMAVTKEAPETDTSPSLWDVEFAKQLATVNEQPLQ-- 295 D+L+K +N+ K N + KE T P +E K NEQ +Q Sbjct: 717 LKDELEKNENLNDDKLDEENPKISAHILKENDRTQMQP----LETLKLEVGENEQIVQIF 772 Query: 296 -NGFEELIQWTKEGK 309 N E+ + KE + Sbjct: 773 GNKMEKTEEVKKEAE 787 >gi|4507525 translocation protein 1 [Homo sapiens] Length = 399 Score = 32.3 bits (72), Expect = 0.76 Identities = 12/30 (40%), Positives = 21/30 (70%) Query: 69 KKDKQSVRTEETSKETSESQDSEKENTKKD 98 K K++++ E+T KE + +D EKE +KK+ Sbjct: 124 KSKKENIKDEKTKKEKEKKKDGEKEESKKE 153 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.314 0.129 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 14,517,793 Number of Sequences: 37866 Number of extensions: 626709 Number of successful extensions: 2324 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 70 Number of HSP's that attempted gapping in prelim test: 2270 Number of HSP's gapped (non-prelim): 126 length of query: 395 length of database: 18,247,518 effective HSP length: 104 effective length of query: 291 effective length of database: 14,309,454 effective search space: 4164051114 effective search space used: 4164051114 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.