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Search of human proteins with 186928854
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|186928854 mitochondrial ribosomal protein S31 [Homo sapiens]
(395 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|186928854 mitochondrial ribosomal protein S31 [Homo sapiens] 786 0.0
gi|32967601 ankyrin 3 isoform 1 [Homo sapiens] 38 0.018
gi|168823435 hypothetical protein LOC79747 [Homo sapiens] 38 0.018
gi|50658065 SMC4 structural maintenance of chromosomes 4-like 1 ... 36 0.053
gi|50658063 SMC4 structural maintenance of chromosomes 4-like 1 ... 36 0.053
gi|45439327 periplakin [Homo sapiens] 36 0.053
gi|87298937 centrosomal protein 110kDa [Homo sapiens] 36 0.053
gi|119466532 laminin alpha 2 subunit isoform b precursor [Homo s... 36 0.069
gi|28559088 laminin alpha 2 subunit isoform a precursor [Homo sa... 36 0.069
gi|55770888 early endosome antigen 1, 162kD [Homo sapiens] 35 0.090
gi|102467235 inner centromere protein antigens 135/155kDa isofor... 34 0.20
gi|102467242 inner centromere protein antigens 135/155kDa isofor... 34 0.20
gi|58197558 tudor domain containing 6 [Homo sapiens] 34 0.26
gi|60685227 SECIS binding protein 2-like [Homo sapiens] 34 0.26
gi|237681121 breast cancer 1, early onset isoform 3 [Homo sapiens] 33 0.45
gi|6552299 breast cancer 1, early onset isoform 1 [Homo sapiens] 33 0.45
gi|91208420 bassoon protein [Homo sapiens] 33 0.45
gi|223634014 solute carrier organic anion transporter family, me... 33 0.59
gi|223634012 solute carrier organic anion transporter family, me... 33 0.59
gi|6005820 solute carrier organic anion transporter family, memb... 33 0.59
gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo sa... 33 0.59
gi|37577287 syntaxin 2 isoform 1 [Homo sapiens] 33 0.59
gi|37577162 syntaxin 2 isoform 2 [Homo sapiens] 33 0.59
gi|41055989 M-phase phosphoprotein 8 [Homo sapiens] 32 0.76
gi|33620716 retinoblastoma-binding protein 6 isoform 2 [Homo sap... 32 0.76
gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo sap... 32 0.76
gi|115334679 retinoblastoma-binding protein 1 isoform III [Homo ... 32 0.76
gi|115334673 retinoblastoma-binding protein 1 isoform II [Homo s... 32 0.76
gi|115334677 retinoblastoma-binding protein 1 isoform I [Homo sa... 32 0.76
gi|4507525 translocation protein 1 [Homo sapiens] 32 0.76
>gi|186928854 mitochondrial ribosomal protein S31 [Homo sapiens]
Length = 395
Score = 786 bits (2029), Expect = 0.0
Identities = 395/395 (100%), Positives = 395/395 (100%)
Query: 1 MFPRVSTFLPLRPLSRHPLSSGSPETSAAAIMLLTVRHGTVRYRSSALLARTKNNIQRYF 60
MFPRVSTFLPLRPLSRHPLSSGSPETSAAAIMLLTVRHGTVRYRSSALLARTKNNIQRYF
Sbjct: 1 MFPRVSTFLPLRPLSRHPLSSGSPETSAAAIMLLTVRHGTVRYRSSALLARTKNNIQRYF 60
Query: 61 GTNSVICSKKDKQSVRTEETSKETSESQDSEKENTKKDLLGIIKGMKVELSTVNVRTTKP 120
GTNSVICSKKDKQSVRTEETSKETSESQDSEKENTKKDLLGIIKGMKVELSTVNVRTTKP
Sbjct: 61 GTNSVICSKKDKQSVRTEETSKETSESQDSEKENTKKDLLGIIKGMKVELSTVNVRTTKP 120
Query: 121 PKRRPLKSLEATLGRLRRATEYAPKKRIEPLSPELVAAASAVADSLPFDKQTTKSELLSQ 180
PKRRPLKSLEATLGRLRRATEYAPKKRIEPLSPELVAAASAVADSLPFDKQTTKSELLSQ
Sbjct: 121 PKRRPLKSLEATLGRLRRATEYAPKKRIEPLSPELVAAASAVADSLPFDKQTTKSELLSQ 180
Query: 181 LQQHEEESRAQRDAKRPKISFSNIISDMKVARSATARVRSRPELRIQFDEGYDNYPGQEK 240
LQQHEEESRAQRDAKRPKISFSNIISDMKVARSATARVRSRPELRIQFDEGYDNYPGQEK
Sbjct: 181 LQQHEEESRAQRDAKRPKISFSNIISDMKVARSATARVRSRPELRIQFDEGYDNYPGQEK 240
Query: 241 TDDLKKRKNIFTGKRLNIFDMMAVTKEAPETDTSPSLWDVEFAKQLATVNEQPLQNGFEE 300
TDDLKKRKNIFTGKRLNIFDMMAVTKEAPETDTSPSLWDVEFAKQLATVNEQPLQNGFEE
Sbjct: 241 TDDLKKRKNIFTGKRLNIFDMMAVTKEAPETDTSPSLWDVEFAKQLATVNEQPLQNGFEE 300
Query: 301 LIQWTKEGKLWEFPINNEAGFDDDGSEFHEHIFLEKHLESFPKQGPIRHFMELVTCGLSK 360
LIQWTKEGKLWEFPINNEAGFDDDGSEFHEHIFLEKHLESFPKQGPIRHFMELVTCGLSK
Sbjct: 301 LIQWTKEGKLWEFPINNEAGFDDDGSEFHEHIFLEKHLESFPKQGPIRHFMELVTCGLSK 360
Query: 361 NPYLSVKQKVEHIEWFRNYFNEKKDILKESNIQFN 395
NPYLSVKQKVEHIEWFRNYFNEKKDILKESNIQFN
Sbjct: 361 NPYLSVKQKVEHIEWFRNYFNEKKDILKESNIQFN 395
>gi|32967601 ankyrin 3 isoform 1 [Homo sapiens]
Length = 4377
Score = 37.7 bits (86), Expect = 0.018
Identities = 35/145 (24%), Positives = 63/145 (43%), Gaps = 8/145 (5%)
Query: 9 LPLRPLSRHPLSSGSPETSAAAIMLLTVRHGTVRYRSSALLARTKNNIQRYFGTNSVICS 68
LP++ S ++ + T+ T TV+ R S L K++I+ + G +
Sbjct: 3950 LPVKVRSTCVTTTTTTATTTTTTTTTTTTSCTVKVRKSQLKEVCKHSIEYFKGISGETLK 4009
Query: 69 KKDKQSVRTEETSKETSESQDSEKENTKKDLLGIIKGMKVELSTVNVRTTKPPKRRPLKS 128
D+ S ++ E S+ ++S NT L +G + ++T + R K + PLKS
Sbjct: 4010 LVDRLSEEEKKMQSELSDEEESTSRNT--SLSETSRGGQPSVTTKSAR-DKKTEAAPLKS 4066
Query: 129 LEATLGRLRRATEYAPKKRIEPLSP 153
G +R++ +R P SP
Sbjct: 4067 KSEKAGSEKRSS-----RRTGPQSP 4086
>gi|168823435 hypothetical protein LOC79747 [Homo sapiens]
Length = 1667
Score = 37.7 bits (86), Expect = 0.018
Identities = 68/277 (24%), Positives = 112/277 (40%), Gaps = 51/277 (18%)
Query: 68 SKKDKQSVRTEETSKETSESQDSEKENTKKDLLGIIKGMKVELSTVNVRTTKPPK----- 122
S+ K SV ++ T K +S SEKE T K+ + ++STV+ + P K
Sbjct: 1308 SEGQKSSVTSKTTRKGKEKS--SEKEKTAKEKQA--PRFEPQISTVHPQQEDPNKPYWIL 1363
Query: 123 RRPLKSLEATLGRLRRATEYAPKKRIEPLSPELVAAASAVADSLP-------FDKQTTKS 175
R + E+ L +++ TE A + R + E A+ S F K+T+ +
Sbjct: 1364 RLVTEHNESELFEVKKDTERADEIRAMKQAWETTEPGRAIKASQARLHYLSGFIKKTSDA 1423
Query: 176 ELL----SQLQQHEEESRAQRDAKRP--KISFSNIISDMKVARSATA---RVRSRPELR- 225
E SQ + EE A R K P K S + +M S +A + + LR
Sbjct: 1424 ESPPISESQTKPKEEVETAARGVKEPNSKNSAGSESKEMTQTGSGSAVWKKWQLTKGLRD 1483
Query: 226 ----IQFDEGYDNYPGQEKTDDLKKRKNIFTGKRL--------------NIFDMMAVTKE 267
+ G + PG+E+ + +++NI TG R + M +++
Sbjct: 1484 VAKSTSSESGGVSSPGKEEREQSTRKENIQTGPRTRSPTILETSPRLIRKALEFMDLSQY 1543
Query: 268 APETDTSPSLWDVEFAKQLATVNEQPLQNGFEELIQW 304
+TDT P L Q +N+Q EE+ Q+
Sbjct: 1544 VRKTDTDPLL-------QTDELNQQQAMQKAEEIHQF 1573
>gi|50658065 SMC4 structural maintenance of chromosomes 4-like 1
[Homo sapiens]
Length = 1288
Score = 36.2 bits (82), Expect = 0.053
Identities = 37/179 (20%), Positives = 79/179 (44%), Gaps = 22/179 (12%)
Query: 50 ARTKNNIQRYFGTNSVICSKKDKQSVRTEETS---KETSESQDSEKENTKKDLLGIIKGM 106
A++ N I N+ + +K+K+ + +E K+ ++ EKE+ +K+L+G K +
Sbjct: 433 AKSNNIINETTTRNNALEKEKEKEEKKLKEVMDSLKQETQGLQKEKESREKELMGFSKSV 492
Query: 107 KVELSTVNVRTTKPPKRRPLKSLEATLGRLRRATEYAPKKRIEPLSPELVAAASAVADSL 166
S ++V ++ L+ L R A K + E + AAS
Sbjct: 493 NEARSKMDVAQSE---------LDIYLSRHNTAVSQLTKAK------EALIAASETLKER 537
Query: 167 PFDKQTTKSELLSQLQQHEEESRAQRDAKRPKISFSNIISDM----KVARSATARVRSR 221
+ + +L Q+ +E+ + + + + +F +++ D+ + A+S+ A RSR
Sbjct: 538 KAAIRDIEGKLPQTEQELKEKEKELQKLTQEETNFKSLVHDLFQKVEEAKSSLAMNRSR 596
>gi|50658063 SMC4 structural maintenance of chromosomes 4-like 1
[Homo sapiens]
Length = 1288
Score = 36.2 bits (82), Expect = 0.053
Identities = 37/179 (20%), Positives = 79/179 (44%), Gaps = 22/179 (12%)
Query: 50 ARTKNNIQRYFGTNSVICSKKDKQSVRTEETS---KETSESQDSEKENTKKDLLGIIKGM 106
A++ N I N+ + +K+K+ + +E K+ ++ EKE+ +K+L+G K +
Sbjct: 433 AKSNNIINETTTRNNALEKEKEKEEKKLKEVMDSLKQETQGLQKEKESREKELMGFSKSV 492
Query: 107 KVELSTVNVRTTKPPKRRPLKSLEATLGRLRRATEYAPKKRIEPLSPELVAAASAVADSL 166
S ++V ++ L+ L R A K + E + AAS
Sbjct: 493 NEARSKMDVAQSE---------LDIYLSRHNTAVSQLTKAK------EALIAASETLKER 537
Query: 167 PFDKQTTKSELLSQLQQHEEESRAQRDAKRPKISFSNIISDM----KVARSATARVRSR 221
+ + +L Q+ +E+ + + + + +F +++ D+ + A+S+ A RSR
Sbjct: 538 KAAIRDIEGKLPQTEQELKEKEKELQKLTQEETNFKSLVHDLFQKVEEAKSSLAMNRSR 596
>gi|45439327 periplakin [Homo sapiens]
Length = 1756
Score = 36.2 bits (82), Expect = 0.053
Identities = 38/142 (26%), Positives = 65/142 (45%), Gaps = 17/142 (11%)
Query: 69 KKDKQSVRTEETSKETSESQDSEKENTKKDLLGI-IKGMKVELSTVNVRTTKPPKRRPLK 127
K K V+T+E +E + Q E TK+++ + K + + V++ + + +
Sbjct: 1280 KDTKPQVQTKEVVQEILQFQ--EDPQTKEEVASLRAKLSEEQKKQVDLERERASQEEQIA 1337
Query: 128 SLEATLGRLRRATEYAPKKRIEPLSPELVAAASAVADSLP-----FDK--------QTTK 174
E L R++ R E P L A ASA A+S+ DK Q +
Sbjct: 1338 RKEEELSRVKERVVQQEVVRYEE-EPGLRAEASAFAESIDVELRQIDKLRAELRRLQRRR 1396
Query: 175 SELLSQLQQHEEESRAQRDAKR 196
+EL QL++ E E +A+R+A+R
Sbjct: 1397 TELERQLEELERERQARREAER 1418
>gi|87298937 centrosomal protein 110kDa [Homo sapiens]
Length = 2325
Score = 36.2 bits (82), Expect = 0.053
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 66 ICSKKDKQSVRTEETSKETSESQDSEKENTKKDLLGIIKGMKVELSTVNVRTTKPPKR-R 124
I S+ K++ ++ ++ +E Q + E KKDL G+I G++ L T+ + T+ R
Sbjct: 581 ILSRIAKETEEIKDLEEQLTEGQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECR 640
Query: 125 PLKSLEATLGRLRRATE 141
L+ + TL L+R TE
Sbjct: 641 KLRDEKETL--LQRLTE 655
>gi|119466532 laminin alpha 2 subunit isoform b precursor [Homo
sapiens]
Length = 3118
Score = 35.8 bits (81), Expect = 0.069
Identities = 47/203 (23%), Positives = 81/203 (39%), Gaps = 27/203 (13%)
Query: 63 NSVICSKKDKQSVRTEETSKETSESQDSEKENTKKDLLG-IIKGMKVELSTVNVRTTKPP 121
N+++ + + T+ T+ QD+E+ NT+ LG IK + + VN + K
Sbjct: 1641 NTLVTEMNELLTRATKVTADGEQTGQDAERTNTRAKSLGEFIKELARDAEAVNEKAIK-- 1698
Query: 122 KRRPLKSLEATLGRLRRATE---YAPKKRIEPLSPELVAAASAVADSLPFDKQTTKSELL 178
L TLG A E +K I+ + EL + D+ LL
Sbjct: 1699 -------LNETLGTRDEAFERNLEGLQKEIDQMIKELRRKNLETQKEIAEDELVAAEALL 1751
Query: 179 SQLQQHEEESRA-----QRDAKRPKISFSNIISD-MKVARSATARVRSRPELRIQFDEGY 232
++++ ESR ++D + + N + D + R AT ++R L F
Sbjct: 1752 KKVKKLFGESRGENEEMEKDLREKLADYKNKVDDAWDLLREATDKIREANRL---FAVNQ 1808
Query: 233 DNYPGQEKTDDLKKRKNIFTGKR 255
N E KK++ + +GKR
Sbjct: 1809 KNMTALE-----KKKEAVESGKR 1826
>gi|28559088 laminin alpha 2 subunit isoform a precursor [Homo
sapiens]
Length = 3122
Score = 35.8 bits (81), Expect = 0.069
Identities = 47/203 (23%), Positives = 81/203 (39%), Gaps = 27/203 (13%)
Query: 63 NSVICSKKDKQSVRTEETSKETSESQDSEKENTKKDLLG-IIKGMKVELSTVNVRTTKPP 121
N+++ + + T+ T+ QD+E+ NT+ LG IK + + VN + K
Sbjct: 1641 NTLVTEMNELLTRATKVTADGEQTGQDAERTNTRAKSLGEFIKELARDAEAVNEKAIK-- 1698
Query: 122 KRRPLKSLEATLGRLRRATE---YAPKKRIEPLSPELVAAASAVADSLPFDKQTTKSELL 178
L TLG A E +K I+ + EL + D+ LL
Sbjct: 1699 -------LNETLGTRDEAFERNLEGLQKEIDQMIKELRRKNLETQKEIAEDELVAAEALL 1751
Query: 179 SQLQQHEEESRA-----QRDAKRPKISFSNIISD-MKVARSATARVRSRPELRIQFDEGY 232
++++ ESR ++D + + N + D + R AT ++R L F
Sbjct: 1752 KKVKKLFGESRGENEEMEKDLREKLADYKNKVDDAWDLLREATDKIREANRL---FAVNQ 1808
Query: 233 DNYPGQEKTDDLKKRKNIFTGKR 255
N E KK++ + +GKR
Sbjct: 1809 KNMTALE-----KKKEAVESGKR 1826
>gi|55770888 early endosome antigen 1, 162kD [Homo sapiens]
Length = 1411
Score = 35.4 bits (80), Expect = 0.090
Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 17/133 (12%)
Query: 70 KDKQSVRTEETSKETSESQDS-EKENTKKDLLGI-IKGMKVELSTVNVRTTKPPKRRPLK 127
K + V+ E T KE E + S EKE L + + M+ +L + + T + +
Sbjct: 898 KHQLQVQMENTLKEQKELKKSLEKEKEASHQLKLELNSMQEQL--IQAQNTLKQNEKEEQ 955
Query: 128 SLEATLGRLRRATEYAPKKRIEPLSPELVAAASAVADSLPFDKQTTKSELLSQLQQHEEE 187
L+ + L++++E KK+IE L EL A K+EL ++LQQ +
Sbjct: 956 QLQGNINELKQSSEQK-KKQIEALQGELKIAV------------LQKTELENKLQQQLTQ 1002
Query: 188 SRAQRDAKRPKIS 200
+ + A++ KIS
Sbjct: 1003 AAQELAAEKEKIS 1015
>gi|102467235 inner centromere protein antigens 135/155kDa isoform 1
[Homo sapiens]
Length = 918
Score = 34.3 bits (77), Expect = 0.20
Identities = 30/133 (22%), Positives = 57/133 (42%), Gaps = 3/133 (2%)
Query: 69 KKDKQSVRTEETSKETSESQDSEKENTKKDLLGIIKGMKVELSTVNVRT---TKPPKRRP 125
+K++Q + +E + + + E K+ L +K + E ++ + K
Sbjct: 536 EKERQRLENLRRKEEAEQLRRQKVEEDKRRRLEEVKLKREERLRKVLQARERVEQMKEEK 595
Query: 126 LKSLEATLGRLRRATEYAPKKRIEPLSPELVAAASAVADSLPFDKQTTKSELLSQLQQHE 185
K +E ++ TE A ++R+ + AAA + + KQ ++ L LQQ E
Sbjct: 596 KKQIEQKFAQIDEKTEKAKEERLAEEKAKKKAAAKKMEEVEARRKQEEEARRLRWLQQEE 655
Query: 186 EESRAQRDAKRPK 198
EE R Q ++ K
Sbjct: 656 EERRHQELLQKKK 668
>gi|102467242 inner centromere protein antigens 135/155kDa isoform 2
[Homo sapiens]
Length = 914
Score = 34.3 bits (77), Expect = 0.20
Identities = 30/133 (22%), Positives = 57/133 (42%), Gaps = 3/133 (2%)
Query: 69 KKDKQSVRTEETSKETSESQDSEKENTKKDLLGIIKGMKVELSTVNVRT---TKPPKRRP 125
+K++Q + +E + + + E K+ L +K + E ++ + K
Sbjct: 532 EKERQRLENLRRKEEAEQLRRQKVEEDKRRRLEEVKLKREERLRKVLQARERVEQMKEEK 591
Query: 126 LKSLEATLGRLRRATEYAPKKRIEPLSPELVAAASAVADSLPFDKQTTKSELLSQLQQHE 185
K +E ++ TE A ++R+ + AAA + + KQ ++ L LQQ E
Sbjct: 592 KKQIEQKFAQIDEKTEKAKEERLAEEKAKKKAAAKKMEEVEARRKQEEEARRLRWLQQEE 651
Query: 186 EESRAQRDAKRPK 198
EE R Q ++ K
Sbjct: 652 EERRHQELLQKKK 664
>gi|58197558 tudor domain containing 6 [Homo sapiens]
Length = 2096
Score = 33.9 bits (76), Expect = 0.26
Identities = 17/57 (29%), Positives = 32/57 (56%)
Query: 55 NIQRYFGTNSVICSKKDKQSVRTEETSKETSESQDSEKENTKKDLLGIIKGMKVELS 111
N+ R FG S + + QS TEE ETS+SQ +E ++ L ++ ++++++
Sbjct: 430 NLNRVFGVQSCCLADRVLQSQATEEEEPETSQSQSPAEEVDEEISLPALRSIRLKMN 486
>gi|60685227 SECIS binding protein 2-like [Homo sapiens]
Length = 1056
Score = 33.9 bits (76), Expect = 0.26
Identities = 29/154 (18%), Positives = 70/154 (45%), Gaps = 8/154 (5%)
Query: 70 KDKQSVRTEETSKETSESQDSEKENTKKDLLGIIKGMKVELSTVNVR------TTKPPKR 123
+ + + + E+ +E +E+ +++ EN ++ L + E S +N+ TT PKR
Sbjct: 339 EQRNNSQDEDGFQELNENGNAKDENIQQKLSSKVLDDLPENSPINIVQTPIPITTSVPKR 398
Query: 124 RPLKSLEATLGRLRRATEYAPKKRIEPLSPELVAAASAVADSLPFDKQTTKSELLSQLQQ 183
+ +A L A EY+ + E ++ A+ + P Q ++L+ L++
Sbjct: 399 AKSQKKKALAAALATAQEYSEISMEQKKLQEALSKAAGKKNKTPV--QLDLGDMLAALEK 456
Query: 184 HEEESRAQRDAKRPKISFSNIISDMKVARSATAR 217
++ +A++ +S++ + + + +T R
Sbjct: 457 QQQAMKARQITNTRPLSYTVVTAASFHTKDSTNR 490
>gi|237681121 breast cancer 1, early onset isoform 3 [Homo sapiens]
Length = 1816
Score = 33.1 bits (74), Expect = 0.45
Identities = 53/244 (21%), Positives = 90/244 (36%), Gaps = 38/244 (15%)
Query: 35 TVRHGTVRYRSSALLARTKNNIQRYFGT-----NSVICSKKDKQSVRTEET-------SK 82
+ RH TV + L T+ N+ + N VI +K ++ +EET S
Sbjct: 1194 STRHSTVA--TECLSKNTEENLLSLKNSLNDCSNQVILAKASQEHHLSEETKCSASLFSS 1251
Query: 83 ETSESQDSEKENTKKD--LLGIIKGMKVELSTVNVR--------------TTKPPKRRPL 126
+ SE +D +D L+G K M+ + + V T +
Sbjct: 1252 QCSELEDLTANTNTQDPFLIGSSKQMRHQSESQGVGLSDKELVSDDEERGTGLEENNQEE 1311
Query: 127 KSLEATLGRLRRATEYAPKKRIEPLSPELVAAASAVADSLPFDKQTTKSELLSQLQQHEE 186
+S+++ LG E E E + S+ +D L ++ T L +LQQ
Sbjct: 1312 QSMDSNLGEAASGCES------ETSVSEDCSGLSSQSDILTTQQRDTMQHNLIKLQQEMA 1365
Query: 187 ESRA--QRDAKRPKISFSNIISDMKVARSATARVRSRPELRIQFDEGYDNYPGQEKTDDL 244
E A ++ +P S+ +IISD +S E + + YP + + L
Sbjct: 1366 ELEAVLEQHGSQPSNSYPSIISDSSALEDLRNPEQSTSEKAVLTSQKSSEYPISQNPEGL 1425
Query: 245 KKRK 248
K
Sbjct: 1426 SADK 1429
>gi|6552299 breast cancer 1, early onset isoform 1 [Homo sapiens]
Length = 1863
Score = 33.1 bits (74), Expect = 0.45
Identities = 53/244 (21%), Positives = 90/244 (36%), Gaps = 38/244 (15%)
Query: 35 TVRHGTVRYRSSALLARTKNNIQRYFGT-----NSVICSKKDKQSVRTEET-------SK 82
+ RH TV + L T+ N+ + N VI +K ++ +EET S
Sbjct: 1241 STRHSTVA--TECLSKNTEENLLSLKNSLNDCSNQVILAKASQEHHLSEETKCSASLFSS 1298
Query: 83 ETSESQDSEKENTKKD--LLGIIKGMKVELSTVNVR--------------TTKPPKRRPL 126
+ SE +D +D L+G K M+ + + V T +
Sbjct: 1299 QCSELEDLTANTNTQDPFLIGSSKQMRHQSESQGVGLSDKELVSDDEERGTGLEENNQEE 1358
Query: 127 KSLEATLGRLRRATEYAPKKRIEPLSPELVAAASAVADSLPFDKQTTKSELLSQLQQHEE 186
+S+++ LG E E E + S+ +D L ++ T L +LQQ
Sbjct: 1359 QSMDSNLGEAASGCES------ETSVSEDCSGLSSQSDILTTQQRDTMQHNLIKLQQEMA 1412
Query: 187 ESRA--QRDAKRPKISFSNIISDMKVARSATARVRSRPELRIQFDEGYDNYPGQEKTDDL 244
E A ++ +P S+ +IISD +S E + + YP + + L
Sbjct: 1413 ELEAVLEQHGSQPSNSYPSIISDSSALEDLRNPEQSTSEKAVLTSQKSSEYPISQNPEGL 1472
Query: 245 KKRK 248
K
Sbjct: 1473 SADK 1476
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 33.1 bits (74), Expect = 0.45
Identities = 33/181 (18%), Positives = 71/181 (39%), Gaps = 3/181 (1%)
Query: 13 PLSRHPLSSGSPETSAAAIMLLTVRHGTVRYRSSALLARTKNNIQRYFGTNSVICSKKDK 72
P P+ PET+ V+ G R + + + + ++ +
Sbjct: 613 PTKAEPMPKPPPETTPTPATP-KVKSGVRRAEPATPVVKAVPEAPKGGEAEDLVGKPYSQ 671
Query: 73 QSVRTEETSKETSESQDSEKENTKKDLLGIIKGMKVELSTVNVRTTKPPKRRPLKSLEAT 132
+ R+ ++ +T S D +++ ++ G+++ +L + V PP + + ++
Sbjct: 672 DASRSPQSLSDTGYSSDGIS-SSQSEITGVVQQEVEQLDSAGVTGPHPPSPSEIHKVGSS 730
Query: 133 LGRLRRATEYAPKKRIEPLSPELVAAASAVADSLPFDKQTTKS-ELLSQLQQHEEESRAQ 191
+ L +A AP +R +PLS SL + S E L + + +E+S
Sbjct: 731 MRPLLQAQGLAPSERSKPLSSGTGEEQKQRPHSLSITPEAFDSDEELEDILEEDEDSAEW 790
Query: 192 R 192
R
Sbjct: 791 R 791
>gi|223634014 solute carrier organic anion transporter family,
member 2B1 isoform 3 [Homo sapiens]
Length = 565
Score = 32.7 bits (73), Expect = 0.59
Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 9/114 (7%)
Query: 1 MFPRVSTFLPLRPLSRHPLSSGSP-ETSAAAIMLLTVRHGTVRYRSSALLARTKNNIQRY 59
MF R+ ++P P+ GS +T+ L R RY ++ LL +Q +
Sbjct: 460 MFLRILAWMP------SPVIHGSAIDTTCVHWALSCGRRAVCRYYNNDLLRNRFIGLQFF 513
Query: 60 FGTNSVICSKKDKQSVRTEETSKETSESQDSEKENTKKDLLGIIKGMKVELSTV 113
F T SVIC +R ++ T ES+ S ++ LL G K E S V
Sbjct: 514 FKTGSVICFALVLAVLRQQDKEARTKESRSSPA--VEQQLLVSGPGKKPEDSRV 565
>gi|223634012 solute carrier organic anion transporter family,
member 2B1 isoform 2 [Homo sapiens]
Length = 687
Score = 32.7 bits (73), Expect = 0.59
Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 9/114 (7%)
Query: 1 MFPRVSTFLPLRPLSRHPLSSGSP-ETSAAAIMLLTVRHGTVRYRSSALLARTKNNIQRY 59
MF R+ ++P P+ GS +T+ L R RY ++ LL +Q +
Sbjct: 582 MFLRILAWMP------SPVIHGSAIDTTCVHWALSCGRRAVCRYYNNDLLRNRFIGLQFF 635
Query: 60 FGTNSVICSKKDKQSVRTEETSKETSESQDSEKENTKKDLLGIIKGMKVELSTV 113
F T SVIC +R ++ T ES+ S ++ LL G K E S V
Sbjct: 636 FKTGSVICFALVLAVLRQQDKEARTKESRSSPA--VEQQLLVSGPGKKPEDSRV 687
>gi|6005820 solute carrier organic anion transporter family, member
2B1 isoform 1 [Homo sapiens]
Length = 709
Score = 32.7 bits (73), Expect = 0.59
Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 9/114 (7%)
Query: 1 MFPRVSTFLPLRPLSRHPLSSGSP-ETSAAAIMLLTVRHGTVRYRSSALLARTKNNIQRY 59
MF R+ ++P P+ GS +T+ L R RY ++ LL +Q +
Sbjct: 604 MFLRILAWMP------SPVIHGSAIDTTCVHWALSCGRRAVCRYYNNDLLRNRFIGLQFF 657
Query: 60 FGTNSVICSKKDKQSVRTEETSKETSESQDSEKENTKKDLLGIIKGMKVELSTV 113
F T SVIC +R ++ T ES+ S ++ LL G K E S V
Sbjct: 658 FKTGSVICFALVLAVLRQQDKEARTKESRSSPA--VEQQLLVSGPGKKPEDSRV 709
>gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo
sapiens]
Length = 699
Score = 32.7 bits (73), Expect = 0.59
Identities = 41/203 (20%), Positives = 73/203 (35%), Gaps = 10/203 (4%)
Query: 72 KQSVRTEETSKETSESQDSEKENTKKDLLGIIKGMKVELSTVNVRTTKPPKRRPLKSLEA 131
K R ++S ES SE+E TKK ++ K + +++ + P+ S ++
Sbjct: 415 KLLTRKADSSSSEEESSSSEEEKTKK-MVATTKPKATAKAALSLPAKQAPQGSRDSSSDS 473
Query: 132 TLGRLRRATEYAPKKRIEPLSPELVAAASAVADSLPFDK---QTTKSELLSQLQQHEEES 188
E K ++ P+ VA +A + K +++ S + EEE
Sbjct: 474 DSSSSEEEEEKTSKSAVKK-KPQKVAGGAAPSKPASAKKGKAESSNSSSSDDSSEEEEEK 532
Query: 189 RAQRDAKRPKISFSNIISDMKVARSATARVRSRPELRIQFDEGYDNYPGQEKTDDLKKRK 248
+ + RP+ +N S + A+ E +E K+ LKKRK
Sbjct: 533 LKGKGSPRPQAPKANGTSALTAQNGKAAKNSEEEE-----EEKKKAAVVVSKSGSLKKRK 587
Query: 249 NIFTGKRLNIFDMMAVTKEAPET 271
K + + P T
Sbjct: 588 QNEAAKEAETPQAKKIKLQTPNT 610
>gi|37577287 syntaxin 2 isoform 1 [Homo sapiens]
Length = 287
Score = 32.7 bits (73), Expect = 0.59
Identities = 30/128 (23%), Positives = 57/128 (44%), Gaps = 12/128 (9%)
Query: 106 MKVELSTVN--VRTTKPPKRRPLKSLEATLGRLRRATEYAPKKRIEP-----LSPELVAA 158
+K EL +N ++ T R LK++E + + + RI LS + V A
Sbjct: 70 IKEELEDLNKEIKKTANKIRAKLKAIEQSFDQDESGNRTSVDLRIRRTQHSVLSRKFVEA 129
Query: 159 ASAVADSLPFDKQTTKSELLSQLQ-----QHEEESRAQRDAKRPKISFSNIISDMKVARS 213
+ ++ ++ +K + QL+ ++E ++ +P I S+IISD ++ R
Sbjct: 130 MAEYNEAQTLFRERSKGRIQRQLEITGRTTTDDELEEMLESGKPSIFTSDIISDSQITRQ 189
Query: 214 ATARVRSR 221
A + SR
Sbjct: 190 ALNEIESR 197
>gi|37577162 syntaxin 2 isoform 2 [Homo sapiens]
Length = 288
Score = 32.7 bits (73), Expect = 0.59
Identities = 30/128 (23%), Positives = 57/128 (44%), Gaps = 12/128 (9%)
Query: 106 MKVELSTVN--VRTTKPPKRRPLKSLEATLGRLRRATEYAPKKRIEP-----LSPELVAA 158
+K EL +N ++ T R LK++E + + + RI LS + V A
Sbjct: 70 IKEELEDLNKEIKKTANKIRAKLKAIEQSFDQDESGNRTSVDLRIRRTQHSVLSRKFVEA 129
Query: 159 ASAVADSLPFDKQTTKSELLSQLQ-----QHEEESRAQRDAKRPKISFSNIISDMKVARS 213
+ ++ ++ +K + QL+ ++E ++ +P I S+IISD ++ R
Sbjct: 130 MAEYNEAQTLFRERSKGRIQRQLEITGRTTTDDELEEMLESGKPSIFTSDIISDSQITRQ 189
Query: 214 ATARVRSR 221
A + SR
Sbjct: 190 ALNEIESR 197
>gi|41055989 M-phase phosphoprotein 8 [Homo sapiens]
Length = 860
Score = 32.3 bits (72), Expect = 0.76
Identities = 42/188 (22%), Positives = 75/188 (39%), Gaps = 26/188 (13%)
Query: 71 DKQSVRTEETSKETSESQDSEKENTKKDLLGIIKGMKVELSTVNVRTTKPPKRRPLKSLE 130
D + R ++T ++ +++++ K K L E TV K + +
Sbjct: 325 DVRGRRKKKTPRKAEDTRENRKLENKNAFL--------EKKTV----PKKQRNQDRSKSA 372
Query: 131 ATLGRLRRATEYAPKKRIEPLSPELVAAASAVADSLPFDKQTTKSELLSQLQQHEEESRA 190
A L +L + PK R LS E S DS DK+T ++E + Q+ + +
Sbjct: 373 AELEKLMPVSAQTPKGR--RLSGEERGLWST--DSAEEDKETKRNESKEKYQKRHDSDKE 428
Query: 191 QRDAKRPK-----ISFSNIISDMKVA----RSATARVRSRPELRIQFDEGYDNYPGQEKT 241
++ K PK N K+ + R R E+ + F + D++ +E
Sbjct: 429 EKGRKEPKGLKTLKEIRNAFDLFKLTPEEKNDVSENNRKREEIPLDF-KTIDDHKTKENK 487
Query: 242 DDLKKRKN 249
LK+R+N
Sbjct: 488 QSLKERRN 495
>gi|33620716 retinoblastoma-binding protein 6 isoform 2 [Homo sapiens]
Length = 1758
Score = 32.3 bits (72), Expect = 0.76
Identities = 53/236 (22%), Positives = 96/236 (40%), Gaps = 32/236 (13%)
Query: 69 KKDKQSVRTEETSKETSESQDSEKENTKKDLLGIIKGMKVELSTVNVRTTKPPKRRPLKS 128
++DK + ++T ++ S S+KEN K G KV+ ++PP ++ +
Sbjct: 974 ERDKPKAKGDKTKRKNDGSAVSKKENIVKPAKG--PQEKVDGERERSPRSEPPIKKAKEE 1031
Query: 129 L---------------EATLGRLRRATEYAPKKRIEPLSPELVAAASAVADSLPFDKQTT 173
E G R+A + K+ E + + + +K TT
Sbjct: 1032 TPKTDNTKSSSSSQKDEKITGTPRKAHSKSAKEHQETKPVKEEKVKKDYSKDVKSEKLTT 1091
Query: 174 KSELLSQ-------LQQHEEESRAQRDAKRPKISFSNIISDMKVAR-SATARVRSRPELR 225
K E + L E+ + + + K F + S MK+++ T V+ P+ +
Sbjct: 1092 KEEKAKKPNEKNKPLDNKGEKRKRKTEEKGVDKDFES--SSMKISKLEVTEIVKPSPKRK 1149
Query: 226 IQFD-EGYDNYPGQEK---TDDLKKRK-NIFTGKRLNIFDMMAVTKEAPETDTSPS 276
++ D E D P ++K + KK K N TGK++ + ++ TKE E S S
Sbjct: 1150 MEPDTEKMDRTPEKDKISLSAPAKKIKLNRETGKKIGSTENISNTKEPSEKLESTS 1205
>gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo sapiens]
Length = 1792
Score = 32.3 bits (72), Expect = 0.76
Identities = 53/236 (22%), Positives = 96/236 (40%), Gaps = 32/236 (13%)
Query: 69 KKDKQSVRTEETSKETSESQDSEKENTKKDLLGIIKGMKVELSTVNVRTTKPPKRRPLKS 128
++DK + ++T ++ S S+KEN K G KV+ ++PP ++ +
Sbjct: 1008 ERDKPKAKGDKTKRKNDGSAVSKKENIVKPAKG--PQEKVDGERERSPRSEPPIKKAKEE 1065
Query: 129 L---------------EATLGRLRRATEYAPKKRIEPLSPELVAAASAVADSLPFDKQTT 173
E G R+A + K+ E + + + +K TT
Sbjct: 1066 TPKTDNTKSSSSSQKDEKITGTPRKAHSKSAKEHQETKPVKEEKVKKDYSKDVKSEKLTT 1125
Query: 174 KSELLSQ-------LQQHEEESRAQRDAKRPKISFSNIISDMKVAR-SATARVRSRPELR 225
K E + L E+ + + + K F + S MK+++ T V+ P+ +
Sbjct: 1126 KEEKAKKPNEKNKPLDNKGEKRKRKTEEKGVDKDFES--SSMKISKLEVTEIVKPSPKRK 1183
Query: 226 IQFD-EGYDNYPGQEK---TDDLKKRK-NIFTGKRLNIFDMMAVTKEAPETDTSPS 276
++ D E D P ++K + KK K N TGK++ + ++ TKE E S S
Sbjct: 1184 MEPDTEKMDRTPEKDKISLSAPAKKIKLNRETGKKIGSTENISNTKEPSEKLESTS 1239
>gi|115334679 retinoblastoma-binding protein 1 isoform III [Homo
sapiens]
Length = 1188
Score = 32.3 bits (72), Expect = 0.76
Identities = 61/255 (23%), Positives = 101/255 (39%), Gaps = 22/255 (8%)
Query: 71 DKQSVRTEETSKETSESQ---DSEKENTKKDLLGIIKGMKVELSTVNVRTTKPPKRRPLK 127
DK S EE S+E E++ DSE E ++D+ + G KV++ +T K +K
Sbjct: 539 DKDSDEEEEKSQEREETESKCDSEGEEDEEDMEPCLTGTKVKVKYGRGKTQK-IYEASIK 597
Query: 128 SLEATLGRLRRATEYA--PKKRIEPLSPELVAAASAVADSLPFDKQTTKSELLSQLQQHE 185
S E G + Y + E + + + K+ K++ S+ +
Sbjct: 598 STEIDDGEVLYLVHYYGWNVRYDEWVKADRIIWPLDKGGPKKKQKKKAKNKEDSEKDEKR 657
Query: 186 EESRAQRDAKRPKISFSNIISDMKVARSATARVRSRPELRIQFDEGYD----NYPGQEKT 241
+E R + RP + S + S+M S TA + + E D N +E +
Sbjct: 658 DEERQKSKRGRPPLK-STLSSNMPYGLSKTANSEGKSDSCSSDSETEDALEKNLINEELS 716
Query: 242 --DDLKKRKNIFTGK--RLNIFDMMAVTKEAPETDTSPSLWDVEFAKQLATVNEQPLQ-- 295
D+L+K +N+ K N + KE T P +E K NEQ +Q
Sbjct: 717 LKDELEKNENLNDDKLDEENPKISAHILKENDRTQMQP----LETLKLEVGENEQIVQIF 772
Query: 296 -NGFEELIQWTKEGK 309
N E+ + KE +
Sbjct: 773 GNKMEKTEEVKKEAE 787
>gi|115334673 retinoblastoma-binding protein 1 isoform II [Homo
sapiens]
Length = 1203
Score = 32.3 bits (72), Expect = 0.76
Identities = 61/255 (23%), Positives = 101/255 (39%), Gaps = 22/255 (8%)
Query: 71 DKQSVRTEETSKETSESQ---DSEKENTKKDLLGIIKGMKVELSTVNVRTTKPPKRRPLK 127
DK S EE S+E E++ DSE E ++D+ + G KV++ +T K +K
Sbjct: 539 DKDSDEEEEKSQEREETESKCDSEGEEDEEDMEPCLTGTKVKVKYGRGKTQK-IYEASIK 597
Query: 128 SLEATLGRLRRATEYA--PKKRIEPLSPELVAAASAVADSLPFDKQTTKSELLSQLQQHE 185
S E G + Y + E + + + K+ K++ S+ +
Sbjct: 598 STEIDDGEVLYLVHYYGWNVRYDEWVKADRIIWPLDKGGPKKKQKKKAKNKEDSEKDEKR 657
Query: 186 EESRAQRDAKRPKISFSNIISDMKVARSATARVRSRPELRIQFDEGYD----NYPGQEKT 241
+E R + RP + S + S+M S TA + + E D N +E +
Sbjct: 658 DEERQKSKRGRPPLK-STLSSNMPYGLSKTANSEGKSDSCSSDSETEDALEKNLINEELS 716
Query: 242 --DDLKKRKNIFTGK--RLNIFDMMAVTKEAPETDTSPSLWDVEFAKQLATVNEQPLQ-- 295
D+L+K +N+ K N + KE T P +E K NEQ +Q
Sbjct: 717 LKDELEKNENLNDDKLDEENPKISAHILKENDRTQMQP----LETLKLEVGENEQIVQIF 772
Query: 296 -NGFEELIQWTKEGK 309
N E+ + KE +
Sbjct: 773 GNKMEKTEEVKKEAE 787
>gi|115334677 retinoblastoma-binding protein 1 isoform I [Homo
sapiens]
Length = 1257
Score = 32.3 bits (72), Expect = 0.76
Identities = 61/255 (23%), Positives = 101/255 (39%), Gaps = 22/255 (8%)
Query: 71 DKQSVRTEETSKETSESQ---DSEKENTKKDLLGIIKGMKVELSTVNVRTTKPPKRRPLK 127
DK S EE S+E E++ DSE E ++D+ + G KV++ +T K +K
Sbjct: 539 DKDSDEEEEKSQEREETESKCDSEGEEDEEDMEPCLTGTKVKVKYGRGKTQK-IYEASIK 597
Query: 128 SLEATLGRLRRATEYA--PKKRIEPLSPELVAAASAVADSLPFDKQTTKSELLSQLQQHE 185
S E G + Y + E + + + K+ K++ S+ +
Sbjct: 598 STEIDDGEVLYLVHYYGWNVRYDEWVKADRIIWPLDKGGPKKKQKKKAKNKEDSEKDEKR 657
Query: 186 EESRAQRDAKRPKISFSNIISDMKVARSATARVRSRPELRIQFDEGYD----NYPGQEKT 241
+E R + RP + S + S+M S TA + + E D N +E +
Sbjct: 658 DEERQKSKRGRPPLK-STLSSNMPYGLSKTANSEGKSDSCSSDSETEDALEKNLINEELS 716
Query: 242 --DDLKKRKNIFTGK--RLNIFDMMAVTKEAPETDTSPSLWDVEFAKQLATVNEQPLQ-- 295
D+L+K +N+ K N + KE T P +E K NEQ +Q
Sbjct: 717 LKDELEKNENLNDDKLDEENPKISAHILKENDRTQMQP----LETLKLEVGENEQIVQIF 772
Query: 296 -NGFEELIQWTKEGK 309
N E+ + KE +
Sbjct: 773 GNKMEKTEEVKKEAE 787
>gi|4507525 translocation protein 1 [Homo sapiens]
Length = 399
Score = 32.3 bits (72), Expect = 0.76
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 69 KKDKQSVRTEETSKETSESQDSEKENTKKD 98
K K++++ E+T KE + +D EKE +KK+
Sbjct: 124 KSKKENIKDEKTKKEKEKKKDGEKEESKKE 153
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.129 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,517,793
Number of Sequences: 37866
Number of extensions: 626709
Number of successful extensions: 2324
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 70
Number of HSP's that attempted gapping in prelim test: 2270
Number of HSP's gapped (non-prelim): 126
length of query: 395
length of database: 18,247,518
effective HSP length: 104
effective length of query: 291
effective length of database: 14,309,454
effective search space: 4164051114
effective search space used: 4164051114
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.