Guide to the Human Genome
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Name: C6orf134 Sequence: fasta or formatted (333aa) NCBI GI: 186910323
Description:

hypothetical protein LOC79969 isoform 2

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.3         31           3
 C cysteine            0.6          2           1
 D aspartate           4.2         14           2
 E glutamate           6.0         20           2
 F phenylalanine       4.2         14           2
 G glycine             4.2         14           2
 H histidine           3.9         13           1
 I isoleucine          4.2         14           2
 K lysine              4.5         15           2
 L leucine             9.6         32           3
 M methionine          1.2          4           1
 N asparagine          2.7          9           2
 P proline            12.0         40           3
 Q glutamine           4.5         15           3
 R arginine           10.2         34           3
 S serine              7.2         24           3
 T threonine           3.9         13           3
 V valine              5.1         17           2
 W tryptophan          0.3          1           1
 Y tyrosine            2.1          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC79969 isoform 2 
WASF3                 0.026   WAS protein family, member 3 
FLJ22184              0.022   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.022   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.022   PREDICTED: hypothetical protein LOC80164 
ALX3                  0.022   aristaless-like homeobox 3 
LOC100293112          0.022   PREDICTED: hypothetical protein 
LOC100288817          0.022   PREDICTED: hypothetical protein 
LOC100288817          0.022   PREDICTED: hypothetical protein XP_002343307 
WNK2                  0.022   WNK lysine deficient protein kinase 2 
MLL2                  0.020   myeloid/lymphoid or mixed-lineage leukemia 2 
MLL4                  0.020   myeloid/lymphoid or mixed-lineage leukemia 4 
PRR12                 0.020   proline rich 12 
LOC100292723          0.020   PREDICTED: hypothetical protein 
ADAM15                0.020   a disintegrin and metalloproteinase domain 15 isofor...
SAMD1                 0.020   sterile alpha motif domain containing 1 
ADAM15                0.018   a disintegrin and metalloproteinase domain 15 isofor...
ATN1                  0.018   atrophin-1 
ATN1                  0.018   atrophin-1 
KIAA0907              0.018   hypothetical protein LOC22889 
SH3BP1                0.018   SH3-domain binding protein 1 
WASF2                 0.018   WAS protein family, member 2 
SYNJ1                 0.017   synaptojanin 1 isoform c 
GLTSCR1               0.017   glioma tumor suppressor candidate region gene 1 [Ho...
ANTXR1                0.017   anthrax toxin receptor 1 isoform 1 precursor 
RERE                  0.017   atrophin-1 like protein isoform b 
RERE                  0.017   atrophin-1 like protein isoform a 
RERE                  0.017   atrophin-1 like protein isoform a 
SLC9A5                0.015   solute carrier family 9 (sodium/hydrogen exchanger), ...
LOC100130360          0.015   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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