Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 18375535
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|18375535 three prime repair exonuclease 1 isoform b [Homo
sapiens]
(314 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|18375535 three prime repair exonuclease 1 isoform b [Homo sap... 635 0.0
gi|7705353 three prime repair exonuclease 1 isoform a [Homo sapi... 635 0.0
gi|63079718 three prime repair exonuclease 2 [Homo sapiens] 177 1e-44
gi|45439367 gap junction protein, gamma 2, 47kDa [Homo sapiens] 35 0.086
gi|21361272 myeloid/lymphoid or mixed-lineage leukemia (trithora... 35 0.11
gi|116256475 zinc finger protein 827 [Homo sapiens] 35 0.11
gi|71044479 death inducer-obliterator 1 isoform c [Homo sapiens] 34 0.15
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 33 0.33
gi|56549666 tyrosine kinase, non-receptor, 2 isoform 1 [Homo sap... 33 0.33
gi|58331191 tyrosine kinase, non-receptor, 2 isoform 2 [Homo sap... 33 0.33
gi|201023341 FIP1 like 1 isoform 3 [Homo sapiens] 33 0.33
gi|40254978 FIP1 like 1 isoform 1 [Homo sapiens] 33 0.33
gi|24025682 F-box and leucine-rich repeat protein 16 [Homo sapiens] 33 0.33
gi|29788778 proline rich membrane anchor 1 precursor [Homo sapiens] 33 0.43
gi|62198237 DNA-directed DNA polymerase epsilon [Homo sapiens] 33 0.43
gi|125661043 leukocyte immunoglobulin-like receptor, subfamily B... 33 0.43
gi|125661045 leukocyte immunoglobulin-like receptor, subfamily B... 33 0.43
gi|213513324 hypothetical protein LOC401115 [Homo sapiens] 32 0.56
gi|87239981 tankyrase, TRF1-interacting ankyrin-related ADP-ribo... 32 0.56
gi|201023339 FIP1 like 1 isoform 2 [Homo sapiens] 32 0.73
gi|25121980 dispatched B [Homo sapiens] 32 0.73
gi|223468617 family with sequence similarity 75, member C1 [Homo... 32 0.96
gi|157168329 formin 1 [Homo sapiens] 32 0.96
gi|4826912 paired-like homeodomain 3 [Homo sapiens] 32 0.96
gi|39812378 RAN binding protein 9 [Homo sapiens] 32 0.96
gi|239747677 PREDICTED: hypothetical protein [Homo sapiens] 32 0.96
gi|239741546 PREDICTED: hypothetical protein XP_002342233 [Homo ... 32 0.96
gi|195947369 junction-mediating and regulatory protein [Homo sap... 32 0.96
gi|194294554 SET binding protein 1 isoform a [Homo sapiens] 32 0.96
gi|157817073 Cdc2-related kinase, arginine/serine-rich isoform 2... 32 0.96
>gi|18375535 three prime repair exonuclease 1 isoform b [Homo
sapiens]
Length = 314
Score = 635 bits (1638), Expect = 0.0
Identities = 314/314 (100%), Positives = 314/314 (100%)
Query: 1 MGSQALPPGPMQTLIFFDMEATGLPFSQPKVTELCLLAVHRCALESPPTSQGPPPTVPPP 60
MGSQALPPGPMQTLIFFDMEATGLPFSQPKVTELCLLAVHRCALESPPTSQGPPPTVPPP
Sbjct: 1 MGSQALPPGPMQTLIFFDMEATGLPFSQPKVTELCLLAVHRCALESPPTSQGPPPTVPPP 60
Query: 61 PRVVDKLSLCVAPGKACSPAASEITGLSTAVLAAHGRQCFDDNLANLLLAFLRRQPQPWC 120
PRVVDKLSLCVAPGKACSPAASEITGLSTAVLAAHGRQCFDDNLANLLLAFLRRQPQPWC
Sbjct: 61 PRVVDKLSLCVAPGKACSPAASEITGLSTAVLAAHGRQCFDDNLANLLLAFLRRQPQPWC 120
Query: 121 LVAHNGDRYDFPLLQAELAMLGLTSALDGAFCVDSITALKALERASSPSEHGPRKSYSLG 180
LVAHNGDRYDFPLLQAELAMLGLTSALDGAFCVDSITALKALERASSPSEHGPRKSYSLG
Sbjct: 121 LVAHNGDRYDFPLLQAELAMLGLTSALDGAFCVDSITALKALERASSPSEHGPRKSYSLG 180
Query: 181 SIYTRLYGQSPPDSHTAEGDVLALLSICQWRPQALLRWVDAHARPFGTIRPMYGVTASAR 240
SIYTRLYGQSPPDSHTAEGDVLALLSICQWRPQALLRWVDAHARPFGTIRPMYGVTASAR
Sbjct: 181 SIYTRLYGQSPPDSHTAEGDVLALLSICQWRPQALLRWVDAHARPFGTIRPMYGVTASAR 240
Query: 241 TKPRPSAVTTTAHLATTRNTSPSLGESRGTKDLPPVKDPGALSREGLLAPLGLLAILTLA 300
TKPRPSAVTTTAHLATTRNTSPSLGESRGTKDLPPVKDPGALSREGLLAPLGLLAILTLA
Sbjct: 241 TKPRPSAVTTTAHLATTRNTSPSLGESRGTKDLPPVKDPGALSREGLLAPLGLLAILTLA 300
Query: 301 VATLYGLSLATPGE 314
VATLYGLSLATPGE
Sbjct: 301 VATLYGLSLATPGE 314
>gi|7705353 three prime repair exonuclease 1 isoform a [Homo
sapiens]
Length = 369
Score = 635 bits (1638), Expect = 0.0
Identities = 314/314 (100%), Positives = 314/314 (100%)
Query: 1 MGSQALPPGPMQTLIFFDMEATGLPFSQPKVTELCLLAVHRCALESPPTSQGPPPTVPPP 60
MGSQALPPGPMQTLIFFDMEATGLPFSQPKVTELCLLAVHRCALESPPTSQGPPPTVPPP
Sbjct: 56 MGSQALPPGPMQTLIFFDMEATGLPFSQPKVTELCLLAVHRCALESPPTSQGPPPTVPPP 115
Query: 61 PRVVDKLSLCVAPGKACSPAASEITGLSTAVLAAHGRQCFDDNLANLLLAFLRRQPQPWC 120
PRVVDKLSLCVAPGKACSPAASEITGLSTAVLAAHGRQCFDDNLANLLLAFLRRQPQPWC
Sbjct: 116 PRVVDKLSLCVAPGKACSPAASEITGLSTAVLAAHGRQCFDDNLANLLLAFLRRQPQPWC 175
Query: 121 LVAHNGDRYDFPLLQAELAMLGLTSALDGAFCVDSITALKALERASSPSEHGPRKSYSLG 180
LVAHNGDRYDFPLLQAELAMLGLTSALDGAFCVDSITALKALERASSPSEHGPRKSYSLG
Sbjct: 176 LVAHNGDRYDFPLLQAELAMLGLTSALDGAFCVDSITALKALERASSPSEHGPRKSYSLG 235
Query: 181 SIYTRLYGQSPPDSHTAEGDVLALLSICQWRPQALLRWVDAHARPFGTIRPMYGVTASAR 240
SIYTRLYGQSPPDSHTAEGDVLALLSICQWRPQALLRWVDAHARPFGTIRPMYGVTASAR
Sbjct: 236 SIYTRLYGQSPPDSHTAEGDVLALLSICQWRPQALLRWVDAHARPFGTIRPMYGVTASAR 295
Query: 241 TKPRPSAVTTTAHLATTRNTSPSLGESRGTKDLPPVKDPGALSREGLLAPLGLLAILTLA 300
TKPRPSAVTTTAHLATTRNTSPSLGESRGTKDLPPVKDPGALSREGLLAPLGLLAILTLA
Sbjct: 296 TKPRPSAVTTTAHLATTRNTSPSLGESRGTKDLPPVKDPGALSREGLLAPLGLLAILTLA 355
Query: 301 VATLYGLSLATPGE 314
VATLYGLSLATPGE
Sbjct: 356 VATLYGLSLATPGE 369
>gi|63079718 three prime repair exonuclease 2 [Homo sapiens]
Length = 236
Score = 177 bits (448), Expect = 1e-44
Identities = 105/226 (46%), Positives = 135/226 (59%), Gaps = 11/226 (4%)
Query: 12 QTLIFFDMEATGLPFSQPKVTELCLLAVHRCALESPPTSQGPPPTVPPPPRVVDKLSLCV 71
+T +F D+EATGLP +P++ EL L AVHR +LE+P + +P RV+DKL+LC+
Sbjct: 8 ETFVFLDLEATGLPSVEPEIAELSLFAVHRSSLENPEHDESGALVLP---RVLDKLTLCM 64
Query: 72 APGKACSPAASEITGLSTAVLAAHGRQCFDDNLANLLLAFLRRQPQPWCLVAHNGDRYDF 131
P + + ASEITGLS+ LA + FD + L AFL RQ P CLVAHNG YDF
Sbjct: 65 CPERPFTAKASEITGLSSEGLARCRKAGFDGAVVRTLQAFLSRQAGPICLVAHNGFDYDF 124
Query: 132 PLLQAELAMLGLTSALDGAFCVDSITALKALERASSPSEHGP----RKSYSLGSIYTRLY 187
PLL AEL LG D C+D++ AL+ L+RA S HG R+ YSLGS++ R +
Sbjct: 125 PLLCAELRRLGARLPRD-TVCLDTLPALRGLDRAHS---HGTRARGRQGYSLGSLFHRYF 180
Query: 188 GQSPPDSHTAEGDVLALLSICQWRPQALLRWVDAHARPFGTIRPMY 233
P +H+AEGDV LL I R LL W D AR + I PMY
Sbjct: 181 RAEPSAAHSAEGDVHTLLLIFLHRAAELLAWADEQARGWAHIEPMY 226
>gi|45439367 gap junction protein, gamma 2, 47kDa [Homo sapiens]
Length = 439
Score = 35.0 bits (79), Expect = 0.086
Identities = 42/141 (29%), Positives = 50/141 (35%), Gaps = 17/141 (12%)
Query: 51 QGPPPTVPPP-PRVVDKLSLCVAPGKACSPAASEITGLSTAVLAAHGRQCFDDNLANLLL 109
+GPP + P P PR A G AC P S V AA + D NLANL L
Sbjct: 302 RGPPASAPAPAPRPPPCAFPAAAAGLACPP------DYSLVVRAAERARAHDQNLANLAL 355
Query: 110 AFLRRQPQPWCLVAHNGDRYDFPLLQAELAMLGLTSALDGAFCVDSITALKALERASSPS 169
LR A + DR P + A G A A S T+ + P
Sbjct: 356 QALRDG-----AAAGDRDRDSSPCVGLPAASRGPPRAGAPASRTGSATSAGTVGEQGRPG 410
Query: 170 EH-----GPRKSYSLGSIYTR 185
H PR GS +R
Sbjct: 411 THERPGAKPRAGSEKGSASSR 431
>gi|21361272 myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila); translocated to, 1 [Homo sapiens]
Length = 559
Score = 34.7 bits (78), Expect = 0.11
Identities = 22/57 (38%), Positives = 25/57 (43%), Gaps = 11/57 (19%)
Query: 26 FSQPKVTELCLLAVHRCALESPPTSQGPPPTVPPPPRVVDKLSLCVAPGKACSPAAS 82
F +PK +A+ LES GPPP PPPPR K P A SP S
Sbjct: 251 FKEPK------MALKETKLESTSPKGGPPPPPPPPPRASSK-----RPATADSPKPS 296
>gi|116256475 zinc finger protein 827 [Homo sapiens]
Length = 1077
Score = 34.7 bits (78), Expect = 0.11
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 46 SPPTSQGPPPTVPPPPRVVDKLSLCVAPGKACSPAAS 82
+PP PPP PPPP+ ++ L L V G+ P+ S
Sbjct: 328 TPPPPPPPPPPPPPPPQSLELLLLPVPKGRVSKPSNS 364
>gi|71044479 death inducer-obliterator 1 isoform c [Homo sapiens]
Length = 2240
Score = 34.3 bits (77), Expect = 0.15
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 24 LPFSQPKVTELCLLAVHRCALESPPTSQGPPPTVPPPP--RVVDKLS-LCVAPGKACSPA 80
+P S+ K ++ L + +PP S PPP +P PP +V+ L +P A + A
Sbjct: 1234 VPQSEKKPSKYPLCSADAAVSTTPPGSPPPPPPLPEPPVLKVLSSLKPAAPSPATAATTA 1293
Query: 81 ASEITGLSTAVLAA 94
A+ T S+ +A
Sbjct: 1294 AAASTAASSTASSA 1307
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 33.1 bits (74), Expect = 0.33
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
Query: 223 ARPFGTIRPMYGVTASARTKPRPSAVTTTAHLATTRNTSPSLGESRGTKDLPPVKDPGAL 282
A P P S +T P P A T A T+P + + +PP++ P +L
Sbjct: 338 ATPLPLAPPSPSAPPSLQTLPSPPA--TPPSQAPPSMTTPPMQAPPSLQTIPPIQVPHSL 395
Query: 283 SREGLLAPLGLLAILTLAVATLYG 306
+ L AP LA+ +L T G
Sbjct: 396 TSPSLQAPPSPLALSSLQATTSLG 419
Score = 30.0 bits (66), Expect = 2.8
Identities = 33/96 (34%), Positives = 40/96 (41%), Gaps = 14/96 (14%)
Query: 3 SQALPPGPMQTLIFFDMEATGLPFSQPKVTELCLLAVHRCALESPPTSQGP--PPTVPPP 60
S +LP P+ T P P V LL V SP T Q P PPT P
Sbjct: 816 SASLPMSPLATP----------PPQAPPVLAAPLLQVPPSPPASP-TLQAPRRPPTPGPD 864
Query: 61 PRVVD-KLSLCVAPGKACSPAASEITGLSTAVLAAH 95
V +L+L +APG P+ S + LS LA H
Sbjct: 865 TSVSGPRLTLALAPGPPPPPSRSPSSTLSGPDLAGH 900
>gi|56549666 tyrosine kinase, non-receptor, 2 isoform 1 [Homo
sapiens]
Length = 1038
Score = 33.1 bits (74), Expect = 0.33
Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 14/73 (19%)
Query: 4 QALPPGPMQTLIFFDMEATGLPFSQPKVTELCLLAVHRC--ALESPPTSQGP-------- 53
QA PP P++ +F + G P S + E+ C L++P S P
Sbjct: 676 QARPPPPLEDNLFLPPQGGGKPPSSAQTAEIFQALQQECMRQLQAPAGSPAPSPSPGGDD 735
Query: 54 ----PPTVPPPPR 62
PP VP PPR
Sbjct: 736 KPQVPPRVPIPPR 748
>gi|58331191 tyrosine kinase, non-receptor, 2 isoform 2 [Homo
sapiens]
Length = 1086
Score = 33.1 bits (74), Expect = 0.33
Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 14/73 (19%)
Query: 4 QALPPGPMQTLIFFDMEATGLPFSQPKVTELCLLAVHRC--ALESPPTSQGP-------- 53
QA PP P++ +F + G P S + E+ C L++P S P
Sbjct: 754 QARPPPPLEDNLFLPPQGGGKPPSSAQTAEIFQALQQECMRQLQAPAGSPAPSPSPGGDD 813
Query: 54 ----PPTVPPPPR 62
PP VP PPR
Sbjct: 814 KPQVPPRVPIPPR 826
>gi|201023341 FIP1 like 1 isoform 3 [Homo sapiens]
Length = 520
Score = 33.1 bits (74), Expect = 0.33
Identities = 16/36 (44%), Positives = 18/36 (50%)
Query: 46 SPPTSQGPPPTVPPPPRVVDKLSLCVAPGKACSPAA 81
+PPT PPP +PPPP V L PG P A
Sbjct: 290 APPTHLPPPPFLPPPPTVSTAPPLIPPPGFPPPPGA 325
>gi|40254978 FIP1 like 1 isoform 1 [Homo sapiens]
Length = 594
Score = 33.1 bits (74), Expect = 0.33
Identities = 16/36 (44%), Positives = 18/36 (50%)
Query: 46 SPPTSQGPPPTVPPPPRVVDKLSLCVAPGKACSPAA 81
+PPT PPP +PPPP V L PG P A
Sbjct: 364 APPTHLPPPPFLPPPPTVSTAPPLIPPPGFPPPPGA 399
>gi|24025682 F-box and leucine-rich repeat protein 16 [Homo sapiens]
Length = 479
Score = 33.1 bits (74), Expect = 0.33
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 43 ALESPPTSQGPPPTVPPPPRVVDKLSLCVAPGKACSPAASEITGLSTAVLAAHGRQCFDD 102
A ++ P PPPT+ PPP + LS G C+PA + L+ A D+
Sbjct: 41 ATKNRPCQPPPPPTL-PPPSLAAPLSRAALAGGPCTPAGGPASALAPGHPAERPPLATDE 99
Query: 103 NLAN 106
+ N
Sbjct: 100 KILN 103
>gi|29788778 proline rich membrane anchor 1 precursor [Homo sapiens]
Length = 153
Score = 32.7 bits (73), Expect = 0.43
Identities = 26/87 (29%), Positives = 35/87 (40%), Gaps = 7/87 (8%)
Query: 30 KVTELCLLAVHRCALESPPTSQGPPPTVPPPPRVVDKLSLCVAPGKACSPAASEITGLST 89
KVT+ C H C PP PPP PPPPR+ LS +C S +GL
Sbjct: 43 KVTDSCR---HVCQCRPPPPLPPPPPP-PPPPRL---LSAPAPNSTSCPTEESWWSGLVI 95
Query: 90 AVLAAHGRQCFDDNLANLLLAFLRRQP 116
+ F L + ++R+P
Sbjct: 96 IIAVCCASLVFLTVLVIICYKAIKRKP 122
>gi|62198237 DNA-directed DNA polymerase epsilon [Homo sapiens]
Length = 2286
Score = 32.7 bits (73), Expect = 0.43
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 114 RQPQPWCLVAHNGDRYDFPLLQAELAMLGLTSALDGAFCVDSITALKA 161
++ +P +V +NGD +D+P ++A A+ GL+ + F DS KA
Sbjct: 352 QETKPTIMVTYNGDFFDWPFVEARAAVHGLSMQQEIGFQKDSQGEYKA 399
>gi|125661043 leukocyte immunoglobulin-like receptor, subfamily B,
member 3 isoform 1 [Homo sapiens]
Length = 632
Score = 32.7 bits (73), Expect = 0.43
Identities = 45/162 (27%), Positives = 64/162 (39%), Gaps = 26/162 (16%)
Query: 166 SSPSEHGPRKSYSLGSIYTRLYGQSPPDSHTAEGDVLALLSICQWRPQALLRWVDAHARP 225
S+PS+ P G IY + + P A G+ + LL W+ L + A P
Sbjct: 307 SAPSD--PLNILMAGQIYDTVSLSAQPGPTVASGENVTLLCQSWWQFDTFLLTKEGAAHP 364
Query: 226 FGTIRPMYGVTASARTKPRPSAVTTTAHLATTR-----NTSPSL-------------GES 267
+R MYG A P + T+AH T R +++P L G S
Sbjct: 365 PLRLRSMYG--AHKYQAEFPMSPVTSAHAGTYRCYGSYSSNPHLLSHPSEPLELVVSGHS 422
Query: 268 RGTKDLPPVKDPGALSREGLLAPLGLLAILTLAVATLYGLSL 309
G+ LPP P S GL L +L +++A L L L
Sbjct: 423 GGS-SLPPTGPP---STPGLGRYLEVLIGVSVAFVLLLFLLL 460
>gi|125661045 leukocyte immunoglobulin-like receptor, subfamily B,
member 3 isoform 2 [Homo sapiens]
Length = 631
Score = 32.7 bits (73), Expect = 0.43
Identities = 45/162 (27%), Positives = 64/162 (39%), Gaps = 26/162 (16%)
Query: 166 SSPSEHGPRKSYSLGSIYTRLYGQSPPDSHTAEGDVLALLSICQWRPQALLRWVDAHARP 225
S+PS+ P G IY + + P A G+ + LL W+ L + A P
Sbjct: 307 SAPSD--PLNILMAGQIYDTVSLSAQPGPTVASGENVTLLCQSWWQFDTFLLTKEGAAHP 364
Query: 226 FGTIRPMYGVTASARTKPRPSAVTTTAHLATTR-----NTSPSL-------------GES 267
+R MYG A P + T+AH T R +++P L G S
Sbjct: 365 PLRLRSMYG--AHKYQAEFPMSPVTSAHAGTYRCYGSYSSNPHLLSHPSEPLELVVSGHS 422
Query: 268 RGTKDLPPVKDPGALSREGLLAPLGLLAILTLAVATLYGLSL 309
G+ LPP P S GL L +L +++A L L L
Sbjct: 423 GGS-SLPPTGPP---STPGLGRYLEVLIGVSVAFVLLLFLLL 460
>gi|213513324 hypothetical protein LOC401115 [Homo sapiens]
Length = 139
Score = 32.3 bits (72), Expect = 0.56
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 7/88 (7%)
Query: 21 ATGLPFSQPKVTELCLLAVHRCALESPPTSQGPPPTVPPPPRVVDKLSLCVAPGKA-CSP 79
A G +P+ L LLA+ +PP + P + PPPP ++ LSL + +A P
Sbjct: 27 AAGPGVPEPRAAPLPLLAM------APPPACRSPMSPPPPPLLLLLLSLALLGARARAEP 80
Query: 80 AASEITGLSTAVLAAHGRQCFDDNLANL 107
A S + S + H + L +L
Sbjct: 81 AGSAVPAQSRPCVDCHAFEFMQRALQDL 108
>gi|87239981 tankyrase, TRF1-interacting ankyrin-related
ADP-ribose polymerase [Homo sapiens]
Length = 1327
Score = 32.3 bits (72), Expect = 0.56
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 8/57 (14%)
Query: 40 HRCALESPPTSQGPPPTVPPPPRVVDKLSLCVAPGKACSPAASEITGLSTAVLAAHG 96
H+ L+ P + PPP PPP LS +APG +PA+ +GL+ HG
Sbjct: 14 HQQQLQPAPGASAPPPPPPPP------LSPGLAPG--TTPASPTASGLAPFASPRHG 62
>gi|201023339 FIP1 like 1 isoform 2 [Homo sapiens]
Length = 588
Score = 32.0 bits (71), Expect = 0.73
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 46 SPPTSQGPPPTVPPPPRVVDKLSLCVAPG 74
+PPT PPP +PPPP V L PG
Sbjct: 349 APPTHLPPPPFLPPPPTVSTAPPLIPPPG 377
>gi|25121980 dispatched B [Homo sapiens]
Length = 1401
Score = 32.0 bits (71), Expect = 0.73
Identities = 24/67 (35%), Positives = 29/67 (43%), Gaps = 10/67 (14%)
Query: 38 AVHRCALESPPTSQGPPPTVPPPPRVVDKLSLCVAPGKACSPAA-------SEITGL-ST 89
++H C LE P +S GPPPT V L AP P A S + GL
Sbjct: 57 SLHSCPLEDPSSSSGPPPTTSTLQPVGPSSPL--APAHFTYPRALQEYQGGSSLPGLGDR 114
Query: 90 AVLAAHG 96
A L +HG
Sbjct: 115 AALCSHG 121
>gi|223468617 family with sequence similarity 75, member C1 [Homo
sapiens]
Length = 1188
Score = 31.6 bits (70), Expect = 0.96
Identities = 25/73 (34%), Positives = 29/73 (39%), Gaps = 16/73 (21%)
Query: 7 PPGPMQTLIFFDMEATGLPFSQPKVTELCLLAVHRCALESPPTSQGPPPTVPPPPRVVDK 66
PPGPM T + + L SQP L L E P S PP P PP D
Sbjct: 182 PPGPMTTSV------SSLSASQPPEPSLLL--------ERP--SPEPPALFPHPPHTPDP 225
Query: 67 LSLCVAPGKACSP 79
L+ P K +P
Sbjct: 226 LACSPPPPKGFTP 238
>gi|157168329 formin 1 [Homo sapiens]
Length = 1196
Score = 31.6 bits (70), Expect = 0.96
Identities = 11/15 (73%), Positives = 12/15 (80%)
Query: 47 PPTSQGPPPTVPPPP 61
PP+S GPPP PPPP
Sbjct: 692 PPSSAGPPPPPPPPP 706
>gi|4826912 paired-like homeodomain 3 [Homo sapiens]
Length = 302
Score = 31.6 bits (70), Expect = 0.96
Identities = 34/126 (26%), Positives = 43/126 (34%), Gaps = 7/126 (5%)
Query: 180 GSIYTRLYGQSPPDSHTAEGDVLALLSICQWRPQALLRWVDAHARPFGTIRPMYGVTASA 239
GS L G PP G S W P+AL + A PF G AS
Sbjct: 131 GSFAAPLGGLVPPYEEVYPG-----YSYGNWPPKALAPPLAAKTFPFAFNSVNVGPLASQ 185
Query: 240 RTKPRPSAVTTTA--HLATTRNTSPSLGESRGTKDLPPVKDPGALSREGLLAPLGLLAIL 297
PS++ + A T P G +G PP P A+S + P A
Sbjct: 186 PVFSPPSSIAASMVPSAAAAPGTVPGPGALQGLGGGPPGLAPAAVSSGAVSCPYASAAAA 245
Query: 298 TLAVAT 303
A A+
Sbjct: 246 AAAAAS 251
>gi|39812378 RAN binding protein 9 [Homo sapiens]
Length = 729
Score = 31.6 bits (70), Expect = 0.96
Identities = 22/81 (27%), Positives = 29/81 (35%), Gaps = 11/81 (13%)
Query: 47 PPTSQGPPPTVPPPPRVVDKLS----------LCVAPGKA-CSPAASEITGLSTAVLAAH 95
PP + PPP PPPP + L PG A +P + + G S A H
Sbjct: 76 PPATAAPPPPPPPPPPPASAAAPASGPPAPPGLAAGPGPAGGAPTPALVAGSSAAAPFPH 135
Query: 96 GRQCFDDNLANLLLAFLRRQP 116
G ++ L R P
Sbjct: 136 GDSALNEQEKELQRRLKRLYP 156
>gi|239747677 PREDICTED: hypothetical protein [Homo sapiens]
Length = 262
Score = 31.6 bits (70), Expect = 0.96
Identities = 27/99 (27%), Positives = 39/99 (39%), Gaps = 16/99 (16%)
Query: 7 PPGPMQTLIFFDMEATGLPFSQPKVTELCLLAVHRCALESPPTSQGPPPTVPPPPRVVDK 66
PPGP P +QP+ + + RC S P + P +P P V+K
Sbjct: 128 PPGPPSL--------RRAPINQPRRCQSSGGSPRRCHCSSVPGAPAPASQLPRPAGEVNK 179
Query: 67 L---SLCVAPGKA-----CSPAASEITGLSTAVLAAHGR 97
+ S PG++ C PAAS G V ++ R
Sbjct: 180 VKYPSAARGPGRSTLGVGCEPAASPAAGGWAGVTSSDSR 218
>gi|239741546 PREDICTED: hypothetical protein XP_002342233 [Homo
sapiens]
Length = 262
Score = 31.6 bits (70), Expect = 0.96
Identities = 27/99 (27%), Positives = 39/99 (39%), Gaps = 16/99 (16%)
Query: 7 PPGPMQTLIFFDMEATGLPFSQPKVTELCLLAVHRCALESPPTSQGPPPTVPPPPRVVDK 66
PPGP P +QP+ + + RC S P + P +P P V+K
Sbjct: 128 PPGPPSL--------RRAPINQPRRCQSSGGSPRRCHCSSVPGAPAPASQLPRPAGEVNK 179
Query: 67 L---SLCVAPGKA-----CSPAASEITGLSTAVLAAHGR 97
+ S PG++ C PAAS G V ++ R
Sbjct: 180 VKYPSAARGPGRSTLGVGCEPAASPAAGGWAGVTSSDSR 218
>gi|195947369 junction-mediating and regulatory protein [Homo
sapiens]
Length = 988
Score = 31.6 bits (70), Expect = 0.96
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 14/57 (24%)
Query: 19 MEATGLPFS------QPKVT--------ELCLLAVHRCALESPPTSQGPPPTVPPPP 61
+EAT LP S P ++ E C + ++ PPT PPP PPPP
Sbjct: 766 LEATSLPLSGVTSELPPTISLPLLNNNLEPCSVTINPLPSPLPPTPPPPPPPPPPPP 822
>gi|194294554 SET binding protein 1 isoform a [Homo sapiens]
Length = 1596
Score = 31.6 bits (70), Expect = 0.96
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 38 AVHRCALESPPTSQGPPPTVPPPP 61
AV A E+PP PPP +PPPP
Sbjct: 1511 AVIHMAREAPPLPPPPPPPLPPPP 1534
>gi|157817073 Cdc2-related kinase, arginine/serine-rich isoform 2
[Homo sapiens]
Length = 1481
Score = 31.6 bits (70), Expect = 0.96
Identities = 14/26 (53%), Positives = 15/26 (57%)
Query: 43 ALESPPTSQGPPPTVPPPPRVVDKLS 68
A + PP GPPP PPPP V LS
Sbjct: 1253 AEKRPPEPPGPPPPPPPPPLVEGDLS 1278
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.134 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,119,980
Number of Sequences: 37866
Number of extensions: 795504
Number of successful extensions: 6786
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 82
Number of HSP's that attempted gapping in prelim test: 6148
Number of HSP's gapped (non-prelim): 591
length of query: 314
length of database: 18,247,518
effective HSP length: 102
effective length of query: 212
effective length of database: 14,385,186
effective search space: 3049659432
effective search space used: 3049659432
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.