Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: SETD7 Sequence: fasta or formatted (366aa) NCBI GI: 18139549
Description:

SET domain-containing protein 7

Referenced in:

Histones, Related Proteins, and Modifying Enzymes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.2         19           1
 C cysteine            1.6          6           1
 D aspartate           7.7         28           3
 E glutamate           9.3         34           2
 F phenylalanine       4.6         17           4
 G glycine            10.7         39           2
 H histidine           3.3         12           1
 I isoleucine          3.6         13           1
 K lysine              4.1         15           1
 L leucine             6.3         23           2
 M methionine          2.2          8           1
 N asparagine          3.8         14           1
 P proline             4.9         18           2
 Q glutamine           2.7         10           2
 R arginine            3.3         12           1
 S serine              6.6         24           2
 T threonine           5.7         21           1
 V valine              7.4         27           1
 W tryptophan          0.8          3           1
 Y tyrosine            6.3         23           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SET domain-containing protein 7 
MORN4                 0.051   MORN repeat containing 4 
MORN4                 0.051   MORN repeat containing 4 
MORN1                 0.047   MORN repeat containing 1 
RSPH1                 0.042   testis-specific gene A2 
RSPH10B2              0.040   radial spoke head 10 homolog B2 
RSPH10B               0.040   radial spoke head 10 homolog B 
MORN3                 0.030   MORN repeat containing 3 
ANKMY1                0.030   ankyrin repeat and MYND domain containing 1 isoform ...
EZH1                  0.022   enhancer of zeste homolog 1 
MORN2                 0.020   MORN repeat containing 2 
SUV39H1               0.017   suppressor of variegation 3-9 homolog 1 
EZH2                  0.017   enhancer of zeste 2 isoform b 
EZH2                  0.017   enhancer of zeste 2 isoform a 
ALS2                  0.017   alsin isoform 1 
ANKMY1                0.016   ankyrin repeat and MYND domain containing 1 isoform ...
JPH3                  0.015   junctophilin 3 
JPH2                  0.013   junctophilin 2 isoform 1 
MORN5                 0.013   MORN repeat containing 5 
JPH4                  0.013   junctophilin 4 
JPH4                  0.013   junctophilin 4 
JPH1                  0.012   junctophilin 1 
MLL4                  0.011   myeloid/lymphoid or mixed-lineage leukemia 4 
SETD1A                0.011   SET domain containing 1A 
MLL3                  0.011   myeloid/lymphoid or mixed-lineage leukemia 3 
SETDB2                0.009   SET domain, bifurcated 2 isoform b 
SETDB2                0.009   SET domain, bifurcated 2 isoform a 
MLL2                  0.009   myeloid/lymphoid or mixed-lineage leukemia 2 
SUV420H2              0.009   suppressor of variegation 4-20 homolog 2 
ALS2CL                0.008   ALS2 C-terminal like isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press