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Search of human proteins with 178056552
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|178056552 non-SMC condensin I complex, subunit D2 [Homo
sapiens]
(1401 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|178056552 non-SMC condensin I complex, subunit D2 [Homo sapiens] 2751 0.0
gi|45356151 non-SMC condensin II complex, subunit D3 [Homo sapiens] 58 6e-08
gi|157785645 SPEG complex locus [Homo sapiens] 37 0.10
gi|4503841 ATP-dependent DNA helicase II, 70 kDa subunit [Homo s... 37 0.17
gi|25092658 hypothetical protein LOC221927 [Homo sapiens] 35 0.51
gi|56549656 ARKadia-like 1 isoform b [Homo sapiens] 34 0.86
gi|21450814 ARKadia-like 1 isoform a [Homo sapiens] 34 0.86
gi|32996735 Ras association (RalGDS/AF-6) domain family 5 isofor... 33 1.9
gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo sa... 33 2.5
gi|42560244 peptidylprolyl isomerase G [Homo sapiens] 33 2.5
gi|148727255 microtubule associated serine/threonine kinase fami... 33 2.5
gi|190684667 hypothetical protein LOC162681 [Homo sapiens] 33 2.5
gi|91206454 hypothetical protein LOC257415 isoform 2 [Homo sapiens] 33 2.5
gi|91206456 hypothetical protein LOC257415 isoform 1 [Homo sapiens] 33 2.5
gi|163644283 proteasome (prosome, macropain) activator subunit 4... 33 2.5
gi|38788333 remodeling and spacing factor 1 [Homo sapiens] 32 4.3
gi|32996733 Ras association (RalGDS/AF-6) domain family 5 isofor... 32 4.3
gi|32996731 Ras association (RalGDS/AF-6) domain family 5 isofor... 32 4.3
gi|4503893 beta-1,4-N-acetyl-galactosaminyl transferase 1 [Homo ... 32 4.3
gi|50658069 phosphodiesterase 4D interacting protein isoform 2 [... 32 4.3
gi|50658071 phosphodiesterase 4D interacting protein isoform 5 [... 32 4.3
gi|157311604 phosphodiesterase 4D interacting protein isoform 1 ... 32 4.3
gi|222831595 DEAD (Asp-Glu-Ala-Asp) box polypeptide 60 [Homo sap... 32 4.3
gi|41322923 plectin 1 isoform 11 [Homo sapiens] 32 4.3
gi|41322914 plectin 1 isoform 10 [Homo sapiens] 32 4.3
gi|41322919 plectin 1 isoform 8 [Homo sapiens] 32 4.3
gi|41322910 plectin 1 isoform 7 [Homo sapiens] 32 4.3
gi|41322916 plectin 1 isoform 6 [Homo sapiens] 32 4.3
gi|41322908 plectin 1 isoform 3 [Homo sapiens] 32 4.3
gi|41322912 plectin 1 isoform 2 [Homo sapiens] 32 4.3
>gi|178056552 non-SMC condensin I complex, subunit D2 [Homo sapiens]
Length = 1401
Score = 2751 bits (7132), Expect = 0.0
Identities = 1401/1401 (100%), Positives = 1401/1401 (100%)
Query: 1 MAPQMYEFHLPLSPEELLKSGGVNQYVVQEVLSIKHLPPQLRAFQAAFRAQGPLAMLQHF 60
MAPQMYEFHLPLSPEELLKSGGVNQYVVQEVLSIKHLPPQLRAFQAAFRAQGPLAMLQHF
Sbjct: 1 MAPQMYEFHLPLSPEELLKSGGVNQYVVQEVLSIKHLPPQLRAFQAAFRAQGPLAMLQHF 60
Query: 61 DTIYSILHHFRSIDPGLKEDTLQFLIKVVSRHSQELPAILDDTTLSGSDRNAHLNALKMN 120
DTIYSILHHFRSIDPGLKEDTLQFLIKVVSRHSQELPAILDDTTLSGSDRNAHLNALKMN
Sbjct: 61 DTIYSILHHFRSIDPGLKEDTLQFLIKVVSRHSQELPAILDDTTLSGSDRNAHLNALKMN 120
Query: 121 CYALIRLLESFETMASQTNLVDLDLGGKGKKARTKAAHGFDWEEERQPILQLLTQLLQLD 180
CYALIRLLESFETMASQTNLVDLDLGGKGKKARTKAAHGFDWEEERQPILQLLTQLLQLD
Sbjct: 121 CYALIRLLESFETMASQTNLVDLDLGGKGKKARTKAAHGFDWEEERQPILQLLTQLLQLD 180
Query: 181 IRHLWNHSIIEEEFVSLVTGCCYRLLENPTINHQKNRPTREAITHLLGVALTRYNHMLSA 240
IRHLWNHSIIEEEFVSLVTGCCYRLLENPTINHQKNRPTREAITHLLGVALTRYNHMLSA
Sbjct: 181 IRHLWNHSIIEEEFVSLVTGCCYRLLENPTINHQKNRPTREAITHLLGVALTRYNHMLSA 240
Query: 241 TVKIIQMLQHFEHLAPVLVAAVSLWATDYGMKSIVGEIVREIGQKCPQELSRDPSGTKGF 300
TVKIIQMLQHFEHLAPVLVAAVSLWATDYGMKSIVGEIVREIGQKCPQELSRDPSGTKGF
Sbjct: 241 TVKIIQMLQHFEHLAPVLVAAVSLWATDYGMKSIVGEIVREIGQKCPQELSRDPSGTKGF 300
Query: 301 AAFLTELAERVPAILMSSMCILLDHLDGENYMMRNAVLAAMAEMVLQVLSGDQLEAAARD 360
AAFLTELAERVPAILMSSMCILLDHLDGENYMMRNAVLAAMAEMVLQVLSGDQLEAAARD
Sbjct: 301 AAFLTELAERVPAILMSSMCILLDHLDGENYMMRNAVLAAMAEMVLQVLSGDQLEAAARD 360
Query: 361 TRDQFLDTLQAHGHDVNSFVRSRVLQLFTRIVQQKALPLTRFQAVVALAVGRLADKSVLV 420
TRDQFLDTLQAHGHDVNSFVRSRVLQLFTRIVQQKALPLTRFQAVVALAVGRLADKSVLV
Sbjct: 361 TRDQFLDTLQAHGHDVNSFVRSRVLQLFTRIVQQKALPLTRFQAVVALAVGRLADKSVLV 420
Query: 421 CKNAIQLLASFLANNPFSCKLSDADLAGPLQKETQKLQEMRAQRRTAAASAVLDPEEEWE 480
CKNAIQLLASFLANNPFSCKLSDADLAGPLQKETQKLQEMRAQRRTAAASAVLDPEEEWE
Sbjct: 421 CKNAIQLLASFLANNPFSCKLSDADLAGPLQKETQKLQEMRAQRRTAAASAVLDPEEEWE 480
Query: 481 AMLPELKSTLQQLLQLPQGEEEIPEQIANTETTEDVKGRIYQLLAKASYKKAIILTREAT 540
AMLPELKSTLQQLLQLPQGEEEIPEQIANTETTEDVKGRIYQLLAKASYKKAIILTREAT
Sbjct: 481 AMLPELKSTLQQLLQLPQGEEEIPEQIANTETTEDVKGRIYQLLAKASYKKAIILTREAT 540
Query: 541 GHFQESEPFSHIDPEESEETRLLNILGLIFKGPAASTQEKNPRESTGNMVTGQTVCKNKP 600
GHFQESEPFSHIDPEESEETRLLNILGLIFKGPAASTQEKNPRESTGNMVTGQTVCKNKP
Sbjct: 541 GHFQESEPFSHIDPEESEETRLLNILGLIFKGPAASTQEKNPRESTGNMVTGQTVCKNKP 600
Query: 601 NMSDPEESRGNDELVKQEMLVQYLQDAYSFSRKITEAIGIISKMMYENTTTVVQEVIEFF 660
NMSDPEESRGNDELVKQEMLVQYLQDAYSFSRKITEAIGIISKMMYENTTTVVQEVIEFF
Sbjct: 601 NMSDPEESRGNDELVKQEMLVQYLQDAYSFSRKITEAIGIISKMMYENTTTVVQEVIEFF 660
Query: 661 VMVFQFGVPQALFGVRRMLPLIWSKEPGVREAVLNAYRQLYLNPKGDSARAKAQALIQNL 720
VMVFQFGVPQALFGVRRMLPLIWSKEPGVREAVLNAYRQLYLNPKGDSARAKAQALIQNL
Sbjct: 661 VMVFQFGVPQALFGVRRMLPLIWSKEPGVREAVLNAYRQLYLNPKGDSARAKAQALIQNL 720
Query: 721 SLLLVDASVGTIQCLEEILCEFVQKDELKPAVTQLLWERATEKVACCPLERCSSVMLLGM 780
SLLLVDASVGTIQCLEEILCEFVQKDELKPAVTQLLWERATEKVACCPLERCSSVMLLGM
Sbjct: 721 SLLLVDASVGTIQCLEEILCEFVQKDELKPAVTQLLWERATEKVACCPLERCSSVMLLGM 780
Query: 781 MARGKPEIVGSNLDTLVSIGLDEKFPQDYRLAQQVCHAIANISDRRKPSLGKRHPPFRLP 840
MARGKPEIVGSNLDTLVSIGLDEKFPQDYRLAQQVCHAIANISDRRKPSLGKRHPPFRLP
Sbjct: 781 MARGKPEIVGSNLDTLVSIGLDEKFPQDYRLAQQVCHAIANISDRRKPSLGKRHPPFRLP 840
Query: 841 QEHRLFERLRETVTKGFVHPDPLWIPFKEVAVTLIYQLAEGPEVICAQILQGCAKQALEK 900
QEHRLFERLRETVTKGFVHPDPLWIPFKEVAVTLIYQLAEGPEVICAQILQGCAKQALEK
Sbjct: 841 QEHRLFERLRETVTKGFVHPDPLWIPFKEVAVTLIYQLAEGPEVICAQILQGCAKQALEK 900
Query: 901 LEEKRTSQEDPKESPAMLPTFLLMNLLSLAGDVALQQLVHLEQAVSGELCRRRVLREEQE 960
LEEKRTSQEDPKESPAMLPTFLLMNLLSLAGDVALQQLVHLEQAVSGELCRRRVLREEQE
Sbjct: 901 LEEKRTSQEDPKESPAMLPTFLLMNLLSLAGDVALQQLVHLEQAVSGELCRRRVLREEQE 960
Query: 961 HKTKDPKEKNTSSETTMEEELGLVGATADDTEAELIRGICEMELLDGKQTLAAFVPLLLK 1020
HKTKDPKEKNTSSETTMEEELGLVGATADDTEAELIRGICEMELLDGKQTLAAFVPLLLK
Sbjct: 961 HKTKDPKEKNTSSETTMEEELGLVGATADDTEAELIRGICEMELLDGKQTLAAFVPLLLK 1020
Query: 1021 VCNNPGLYSNPDLSAAASLALGKFCMISATFCDSQLRLLFTMLEKSPLPIVRSNLMVATG 1080
VCNNPGLYSNPDLSAAASLALGKFCMISATFCDSQLRLLFTMLEKSPLPIVRSNLMVATG
Sbjct: 1021 VCNNPGLYSNPDLSAAASLALGKFCMISATFCDSQLRLLFTMLEKSPLPIVRSNLMVATG 1080
Query: 1081 DLAIRFPNLVDPWTPHLYARLRDPAQQVRKTAGLVMTHLILKDMVKVKGQVSEMAVLLID 1140
DLAIRFPNLVDPWTPHLYARLRDPAQQVRKTAGLVMTHLILKDMVKVKGQVSEMAVLLID
Sbjct: 1081 DLAIRFPNLVDPWTPHLYARLRDPAQQVRKTAGLVMTHLILKDMVKVKGQVSEMAVLLID 1140
Query: 1141 PEPQIAALAKNFFNELSHKGNAIYNLLPDIISRLSDPELGVEEEPFHTIMKQLLSYITKD 1200
PEPQIAALAKNFFNELSHKGNAIYNLLPDIISRLSDPELGVEEEPFHTIMKQLLSYITKD
Sbjct: 1141 PEPQIAALAKNFFNELSHKGNAIYNLLPDIISRLSDPELGVEEEPFHTIMKQLLSYITKD 1200
Query: 1201 KQTESLVEKLCQRFRTSRTERQQRDLAYCVSQLPLTERGLRKMLDNFDCFGDKLSDESIF 1260
KQTESLVEKLCQRFRTSRTERQQRDLAYCVSQLPLTERGLRKMLDNFDCFGDKLSDESIF
Sbjct: 1201 KQTESLVEKLCQRFRTSRTERQQRDLAYCVSQLPLTERGLRKMLDNFDCFGDKLSDESIF 1260
Query: 1261 SAFLSVVGKLRRGAKPEGKAIIDEFEQKLRACHTRGLDGIKELEIGQAGSQRAPSAKKPS 1320
SAFLSVVGKLRRGAKPEGKAIIDEFEQKLRACHTRGLDGIKELEIGQAGSQRAPSAKKPS
Sbjct: 1261 SAFLSVVGKLRRGAKPEGKAIIDEFEQKLRACHTRGLDGIKELEIGQAGSQRAPSAKKPS 1320
Query: 1321 TGSRYQPLASTASDNDFVTPEPRRTTRRHPNTQQRASKKKPKVVFSSDESSEEDLSAEMT 1380
TGSRYQPLASTASDNDFVTPEPRRTTRRHPNTQQRASKKKPKVVFSSDESSEEDLSAEMT
Sbjct: 1321 TGSRYQPLASTASDNDFVTPEPRRTTRRHPNTQQRASKKKPKVVFSSDESSEEDLSAEMT 1380
Query: 1381 EDETPKKTTPILRASARRHRS 1401
EDETPKKTTPILRASARRHRS
Sbjct: 1381 EDETPKKTTPILRASARRHRS 1401
>gi|45356151 non-SMC condensin II complex, subunit D3 [Homo sapiens]
Length = 1498
Score = 58.2 bits (139), Expect = 6e-08
Identities = 38/132 (28%), Positives = 64/132 (48%), Gaps = 1/132 (0%)
Query: 1033 LSAAASLALGKFCMISATFCDSQLRLLFTMLEKSPLPIVRSNLMVATGDLAIRFPNLVDP 1092
+ A A + LGK C+ + L LE VR+N+++ DL IR+ +VD
Sbjct: 919 IRAHAIITLGKLCLQHEDLAKKSIPALVRELEVCEDVAVRNNVIIVMCDLCIRYTIMVDK 978
Query: 1093 WTPHLYARLRDPAQQVRKTAGLVMTHLILKDMVKVKGQV-SEMAVLLIDPEPQIAALAKN 1151
+ P++ L+D +RK +++T+L+ ++ VK KG + LID P IA+ +
Sbjct: 979 YIPNISMCLKDSDPFIRKQTLILLTNLLQEEFVKWKGSLFFRFVSTLIDSHPDIASFGEF 1038
Query: 1152 FFNELSHKGNAI 1163
L K N +
Sbjct: 1039 CLAHLLLKRNPV 1050
>gi|157785645 SPEG complex locus [Homo sapiens]
Length = 3267
Score = 37.4 bits (85), Expect = 0.10
Identities = 45/158 (28%), Positives = 58/158 (36%), Gaps = 20/158 (12%)
Query: 1206 LVEKLCQRFRTSRTERQQRDLAYCVSQLPLTERGLRKMLDNFDCFGDKLSDESIFSAFLS 1265
L+E L R R R R A Q PL RGL+K S
Sbjct: 2091 LLESLGGRARDPRMARAASSEAAPHHQPPLENRGLQK-------------SSSFSQGEAE 2137
Query: 1266 VVGKLRRGAKPEGKAIIDEFEQKLRACHTRGLDGIKELEIGQAGSQRAPSAKKPSTGSRY 1325
G+ RR P ++ +L A + + L Q S PSA KPST
Sbjct: 2138 PRGRHRRAGAP-----LEIPVARLGARRLQESPSLSALSEAQPSSPARPSAPKPSTPKSA 2192
Query: 1326 QPLASTASD-NDFVTPEPRRTTRRHPNTQQ-RASKKKP 1361
+P A+T SD P+P + P + RASK P
Sbjct: 2193 EPSATTPSDAPQPPAPQPAQDKAPEPRPEPVRASKPAP 2230
>gi|4503841 ATP-dependent DNA helicase II, 70 kDa subunit [Homo
sapiens]
Length = 609
Score = 36.6 bits (83), Expect = 0.17
Identities = 34/121 (28%), Positives = 52/121 (42%), Gaps = 12/121 (9%)
Query: 1283 DEFEQKLRACHTRGLDGIKE--LEIGQAGSQRAPS--AKKPSTGSRYQPLASTASDNDFV 1338
D FE + H R L+ + +E QA P A GS D+
Sbjct: 476 DSFENPVLQQHFRNLEALALDLMEPEQAVDLTLPKVEAMNKRLGSLVDEFKELVYPPDY- 534
Query: 1339 TPEPRRTTRRHPNTQQRASKKKPKVVFSSDESSEEDLSAEMTEDETPKKTTPILRASARR 1398
PE + T R+H N + + K+PKV E SEE+L +++ K T P+L+ + R
Sbjct: 535 NPEGKVTKRKHDN--EGSGSKRPKV-----EYSEEELKTHISKGTLGKFTVPMLKEACRA 587
Query: 1399 H 1399
+
Sbjct: 588 Y 588
>gi|25092658 hypothetical protein LOC221927 [Homo sapiens]
Length = 821
Score = 35.0 bits (79), Expect = 0.51
Identities = 49/191 (25%), Positives = 74/191 (38%), Gaps = 23/191 (12%)
Query: 279 VREIGQKCPQELSRDPSGTKGFAAFLTELAERVPAILMSSMCILLDHLDGENYMMRNAVL 338
VR+ + +LSR G F L LA VP + + + D E+Y+ +AV
Sbjct: 516 VRDSALEFLTQLSRHWGGQADFRCAL--LASEVPQLALQLL------QDPESYVRASAV- 566
Query: 339 AAMAEMVLQVLSGDQLEAAARDTRDQFLDTLQAHGHDVNSFVRSRVLQLFTRIVQ----Q 394
AM ++ Q L A + FL+ L D F R V+Q+FT ++
Sbjct: 567 TAMGQLSSQGLHAPTSPEHAEARQSLFLELLHILSVDSEGFPRRAVMQVFTEWLRDGHAD 626
Query: 395 KALPLTRFQAVVALAVGRLADKSVLVCKNAIQLLASFLANN--------PFSCKLSDADL 446
A +F A V A R D V ++L FL P++ L +
Sbjct: 627 AAQDTEQFVATVLQAASRDLDWEVRA--QGLELALVFLGQTLGPPRTHCPYAVALPEVAP 684
Query: 447 AGPLQKETQKL 457
A PL + + L
Sbjct: 685 AQPLTEALRAL 695
>gi|56549656 ARKadia-like 1 isoform b [Homo sapiens]
Length = 343
Score = 34.3 bits (77), Expect = 0.86
Identities = 27/117 (23%), Positives = 51/117 (43%), Gaps = 8/117 (6%)
Query: 493 LLQLPQGEEEIPEQIANTETTEDVKGRIYQLLAKASYKKAIILTREATGHFQESEPFSHI 552
L++L + E Q+A+TE+ + GR+Y+ + +L+ ++GH +S+ S
Sbjct: 59 LMELRRDSSE--SQLASTESDKPTTGRVYE----SDSSNHCMLSPSSSGHLADSDTLS-- 110
Query: 553 DPEESEETRLLNILGLIFKGPAASTQEKNPRESTGNMVTGQTVCKNKPNMSDPEESR 609
EE+E ++ + G + +T + R S T K SD + R
Sbjct: 111 SAEENEPSQAETAVEGDPSGVSGATVGRKSRRSRSESETSTMAAKKNRQSSDKQNGR 167
>gi|21450814 ARKadia-like 1 isoform a [Homo sapiens]
Length = 404
Score = 34.3 bits (77), Expect = 0.86
Identities = 27/117 (23%), Positives = 51/117 (43%), Gaps = 8/117 (6%)
Query: 493 LLQLPQGEEEIPEQIANTETTEDVKGRIYQLLAKASYKKAIILTREATGHFQESEPFSHI 552
L++L + E Q+A+TE+ + GR+Y+ + +L+ ++GH +S+ S
Sbjct: 59 LMELRRDSSE--SQLASTESDKPTTGRVYE----SDSSNHCMLSPSSSGHLADSDTLS-- 110
Query: 553 DPEESEETRLLNILGLIFKGPAASTQEKNPRESTGNMVTGQTVCKNKPNMSDPEESR 609
EE+E ++ + G + +T + R S T K SD + R
Sbjct: 111 SAEENEPSQAETAVEGDPSGVSGATVGRKSRRSRSESETSTMAAKKNRQSSDKQNGR 167
>gi|32996735 Ras association (RalGDS/AF-6) domain family 5 isoform C
[Homo sapiens]
Length = 265
Score = 33.1 bits (74), Expect = 1.9
Identities = 30/112 (26%), Positives = 57/112 (50%), Gaps = 22/112 (19%)
Query: 1214 FRTSRTERQQRDLAYCV--SQLPLTERGLRKMLDNFD-----CFGDKLSDESIFSAFLSV 1266
FR ++++ +++ V +Q P T + +++ +D+++ C G KLS++ ++ F+ V
Sbjct: 30 FRNAQSKHLSKNVCKPVEETQRPPTLQEIKQKIDSYNTREKNCLGMKLSEDGTYTGFIKV 89
Query: 1267 VGKLRR------GAKPEGKAIIDEFEQKLRACHT-------RGLDGIKELEI 1305
KLRR G +P+ +I D ++ A T LD IK+L I
Sbjct: 90 HLKLRRPVTVPAGIRPQ--SIYDAIKEVNLAATTDKRTSFYLPLDAIKQLHI 139
>gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo
sapiens]
Length = 699
Score = 32.7 bits (73), Expect = 2.5
Identities = 17/66 (25%), Positives = 33/66 (50%)
Query: 1332 ASDNDFVTPEPRRTTRRHPNTQQRASKKKPKVVFSSDESSEEDLSAEMTEDETPKKTTPI 1391
+SD+D + ++ ++ Q +A+K PK SSD S+ E +++ PK T
Sbjct: 132 SSDDDDEEDQKKQPVQKGVKPQAKAAKAPPKKAKSSDSDSDSSSEDEPPKNQKPKITPVT 191
Query: 1392 LRASAR 1397
++A +
Sbjct: 192 VKAQTK 197
>gi|42560244 peptidylprolyl isomerase G [Homo sapiens]
Length = 754
Score = 32.7 bits (73), Expect = 2.5
Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 11/99 (11%)
Query: 1301 KELEIGQAGSQRAPSAKKPSTGSRYQPLASTASDNDFVTPEP--------RRTTRRHPNT 1352
KE + S + S+ S S +S +SD++ T E R+ +R+H
Sbjct: 185 KEEKKRHKSSSSSSSSSSDSDSSSDSQSSSDSSDSESATEEKSKKRKKKHRKNSRKHKKE 244
Query: 1353 QQRASKKKPKVVFSSDESSEEDLSAEMTEDETPKKTTPI 1391
+++ K K +S ES E+L A+ P++ PI
Sbjct: 245 KKKRKKSKKS---ASSESEAENLEAQPQSTVRPEEIPPI 280
>gi|148727255 microtubule associated serine/threonine kinase family
member 4 isoform a [Homo sapiens]
Length = 2434
Score = 32.7 bits (73), Expect = 2.5
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 16/120 (13%)
Query: 1267 VGKLRRGAKPEGKAII-----------DEFEQKLRACHTRGLDGIKELEIGQAGSQRAPS 1315
+GK+RRG +P+ +A++ E +KL + + DG KE E + QR PS
Sbjct: 1883 LGKVRRGVEPKPEALLARRSLQPPGIESEKSEKLSSFPSLQKDGAKEPERKEQPLQRHPS 1942
Query: 1316 AKKPSTGSRYQPLASTASDNDFVTPE--PRRTTRRHPNTQQRASKKK--PKVVFSSDESS 1371
+ P + + L+S A+ +P R P+T + +S + PK V + ESS
Sbjct: 1943 SIPPPPLTA-KDLSSPAARQHCSSPSHASGREPGAKPSTAEPSSSPQDPPKPVAAHSESS 2001
>gi|190684667 hypothetical protein LOC162681 [Homo sapiens]
Length = 372
Score = 32.7 bits (73), Expect = 2.5
Identities = 22/70 (31%), Positives = 35/70 (50%)
Query: 422 KNAIQLLASFLANNPFSCKLSDADLAGPLQKETQKLQEMRAQRRTAAASAVLDPEEEWEA 481
K+A +L FL N+ SC LS GP++ Q L ++A + + DP+EE +
Sbjct: 266 KSAKGVLEDFLNNDNQSCTLSGGKHHGPVEALKQMLFNLQAVQERFNQNKTTDPKEEIKQ 325
Query: 482 MLPELKSTLQ 491
+ + S LQ
Sbjct: 326 VSEDDFSKLQ 335
>gi|91206454 hypothetical protein LOC257415 isoform 2 [Homo sapiens]
Length = 237
Score = 32.7 bits (73), Expect = 2.5
Identities = 28/131 (21%), Positives = 58/131 (44%), Gaps = 7/131 (5%)
Query: 1275 KPEGKAIIDEFEQKLRACHTRGLDGIKE--LEIGQAGSQRAPSAKKPSTGS-RYQPLAST 1331
K +G + EFE+K+ + L+ +E L ++ S++ KK S RY +S+
Sbjct: 41 KKKGSKALAEFEEKMNENWKKELEKHREKLLSGSESSSKKRQRKKKEKKKSGRYSSSSSS 100
Query: 1332 ASDNDFVT----PEPRRTTRRHPNTQQRASKKKPKVVFSSDESSEEDLSAEMTEDETPKK 1387
+SD+ + E ++ +R + R+ K + ++ S++ L + + +K
Sbjct: 101 SSDSSSSSSDSEDEDKKQGKRRKKKKNRSHKSSESSMSETESDSKDSLKKKKKSKDGTEK 160
Query: 1388 TTPILRASARR 1398
I S +R
Sbjct: 161 EKDIKGLSKKR 171
>gi|91206456 hypothetical protein LOC257415 isoform 1 [Homo sapiens]
Length = 247
Score = 32.7 bits (73), Expect = 2.5
Identities = 28/131 (21%), Positives = 58/131 (44%), Gaps = 7/131 (5%)
Query: 1275 KPEGKAIIDEFEQKLRACHTRGLDGIKE--LEIGQAGSQRAPSAKKPSTGS-RYQPLAST 1331
K +G + EFE+K+ + L+ +E L ++ S++ KK S RY +S+
Sbjct: 51 KKKGSKALAEFEEKMNENWKKELEKHREKLLSGSESSSKKRQRKKKEKKKSGRYSSSSSS 110
Query: 1332 ASDNDFVT----PEPRRTTRRHPNTQQRASKKKPKVVFSSDESSEEDLSAEMTEDETPKK 1387
+SD+ + E ++ +R + R+ K + ++ S++ L + + +K
Sbjct: 111 SSDSSSSSSDSEDEDKKQGKRRKKKKNRSHKSSESSMSETESDSKDSLKKKKKSKDGTEK 170
Query: 1388 TTPILRASARR 1398
I S +R
Sbjct: 171 EKDIKGLSKKR 181
>gi|163644283 proteasome (prosome, macropain) activator subunit 4
[Homo sapiens]
Length = 1843
Score = 32.7 bits (73), Expect = 2.5
Identities = 49/188 (26%), Positives = 79/188 (42%), Gaps = 31/188 (16%)
Query: 1049 ATFCDSQ----LRLLFTMLEKSPLP------IVRSNLMVATGDLAI---RFPNLVDPWTP 1095
AT C+S+ L LF +L +SPL + L V G LA R P L+
Sbjct: 1429 ATSCESRDPRKLHWLFELLLESPLSGEGGSFVDACRLYVLQGGLAQQEWRVPELLHRLLK 1488
Query: 1096 HLYARLRDPAQQVRKTAGLVMTHLILKDMVKVKGQVSEMAVLLIDPEPQIAALAKNFFNE 1155
+L +L + VR+ G V+T++ + D V L + P I+ F
Sbjct: 1489 YLEPKLTQVYKNVRERIGSVLTYIFMID------------VSLPNTTPTISPHVPEFTAR 1536
Query: 1156 LSHKGNAIYNLLPDIISRLSDPELGVEEEPFHTIMKQLLSYITKDKQTESLVEKLCQRFR 1215
+ K + ++ +I + + + E G+ EE T +LL I K L+ + F
Sbjct: 1537 ILEKLKPLMDVDEEIQNHVME-ENGIGEEDERTQGIKLLKTILK-----WLMASAGRSFS 1590
Query: 1216 TSRTERQQ 1223
T+ TE+ Q
Sbjct: 1591 TAVTEQLQ 1598
>gi|38788333 remodeling and spacing factor 1 [Homo sapiens]
Length = 1441
Score = 32.0 bits (71), Expect = 4.3
Identities = 17/51 (33%), Positives = 24/51 (47%)
Query: 1323 SRYQPLASTASDNDFVTPEPRRTTRRHPNTQQRASKKKPKVVFSSDESSEE 1373
S P ++ SD DF + RR R +R +K PK +S D+ EE
Sbjct: 1129 SEEDPPSNDDSDTDFCSRRLRRHPSRPMRQSRRLRRKTPKKKYSDDDEEEE 1179
>gi|32996733 Ras association (RalGDS/AF-6) domain family 5 isoform B
[Homo sapiens]
Length = 336
Score = 32.0 bits (71), Expect = 4.3
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 20/93 (21%)
Query: 1231 SQLPLTERGLRKMLDNFD-----CFGDKLSDESIFSAFLSVVGKLRR------GAKPEGK 1279
+Q P T + +++ +D+++ C G KLS++ ++ F+ V KLRR G +P+
Sbjct: 202 TQRPPTLQEIKQKIDSYNTREKNCLGMKLSEDGTYTGFIKVHLKLRRPVTVPAGIRPQ-- 259
Query: 1280 AIIDEFEQKLRACHT-------RGLDGIKELEI 1305
+I D ++ A T LD IK+L I
Sbjct: 260 SIYDAIKEVNLAATTDKRTSFYLPLDAIKQLHI 292
>gi|32996731 Ras association (RalGDS/AF-6) domain family 5 isoform A
[Homo sapiens]
Length = 418
Score = 32.0 bits (71), Expect = 4.3
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 20/93 (21%)
Query: 1231 SQLPLTERGLRKMLDNFD-----CFGDKLSDESIFSAFLSVVGKLRR------GAKPEGK 1279
+Q P T + +++ +D+++ C G KLS++ ++ F+ V KLRR G +P+
Sbjct: 202 TQRPPTLQEIKQKIDSYNTREKNCLGMKLSEDGTYTGFIKVHLKLRRPVTVPAGIRPQ-- 259
Query: 1280 AIIDEFEQKLRACHT-------RGLDGIKELEI 1305
+I D ++ A T LD IK+L I
Sbjct: 260 SIYDAIKEVNLAATTDKRTSFYLPLDAIKQLHI 292
>gi|4503893 beta-1,4-N-acetyl-galactosaminyl transferase 1 [Homo
sapiens]
Length = 533
Score = 32.0 bits (71), Expect = 4.3
Identities = 21/70 (30%), Positives = 32/70 (45%)
Query: 428 LASFLANNPFSCKLSDADLAGPLQKETQKLQEMRAQRRTAAASAVLDPEEEWEAMLPELK 487
+ LA N SC+ S L P QK+ + + +A +A E+E++A L +
Sbjct: 71 VVGLLAWNNCSCESSGGGLPLPFQKQVRAIDLTKAFDPAELRAASATREQEFQAFLSRSQ 130
Query: 488 STLQQLLQLP 497
S QLL P
Sbjct: 131 SPADQLLIAP 140
>gi|50658069 phosphodiesterase 4D interacting protein isoform 2
[Homo sapiens]
Length = 969
Score = 32.0 bits (71), Expect = 4.3
Identities = 53/252 (21%), Positives = 95/252 (37%), Gaps = 21/252 (8%)
Query: 397 LPLTRFQAVVALAVGRLADKSVLVCKNAIQLLASFLANNPFSCKLSDADLAGPLQKETQK 456
L + + Q VV +LAD C ++ A + + +L LQ+ ++
Sbjct: 353 LEIQKLQRVVRQKERQLADAKQ--CVQFVEAAAHESEQQKEASWKHNQELRKALQQLQEE 410
Query: 457 LQEMRAQRRTAAASAVLDPEEEWEAMLPELKSTLQQLLQLPQGEEEIPEQIANTETTEDV 516
LQ Q R A + + E + L +L QL Q E+ + N++ T +
Sbjct: 411 LQNKSQQLRAWEAEKYNEIRTQ-EQNIQHLNHSLSHKEQLLQEFRELLQYRDNSDKTLEA 469
Query: 517 KGRIYQLLAKASYKKAIILTREATGHFQESEPFSHIDPEESEETRL----------LNIL 566
+ + L + + KA+ L R E FS ++ +E E +L L L
Sbjct: 470 NEMLLEKLRQRIHDKAVALERAI------DEKFSALEEKEKELRQLRLAVRERDHDLERL 523
Query: 567 GLIFKGPAASTQEKNPRESTGNMVTGQ--TVCKNKPNMSDPEESRGNDELVKQEMLVQYL 624
+ A+ Q + Q T C+N + + E++ + +QE ++Q L
Sbjct: 524 RDVLSSNEATMQSMESLLRAKGLEVEQLSTTCQNLQWLKEEMETKFSRWQKEQESIIQQL 583
Query: 625 QDAYSFSRKITE 636
Q + K E
Sbjct: 584 QTSLHDRNKEVE 595
>gi|50658071 phosphodiesterase 4D interacting protein isoform 5
[Homo sapiens]
Length = 1132
Score = 32.0 bits (71), Expect = 4.3
Identities = 53/252 (21%), Positives = 95/252 (37%), Gaps = 21/252 (8%)
Query: 397 LPLTRFQAVVALAVGRLADKSVLVCKNAIQLLASFLANNPFSCKLSDADLAGPLQKETQK 456
L + + Q VV +LAD C ++ A + + +L LQ+ ++
Sbjct: 516 LEIQKLQRVVRQKERQLADAKQ--CVQFVEAAAHESEQQKEASWKHNQELRKALQQLQEE 573
Query: 457 LQEMRAQRRTAAASAVLDPEEEWEAMLPELKSTLQQLLQLPQGEEEIPEQIANTETTEDV 516
LQ Q R A + + E + L +L QL Q E+ + N++ T +
Sbjct: 574 LQNKSQQLRAWEAEKYNEIRTQ-EQNIQHLNHSLSHKEQLLQEFRELLQYRDNSDKTLEA 632
Query: 517 KGRIYQLLAKASYKKAIILTREATGHFQESEPFSHIDPEESEETRL----------LNIL 566
+ + L + + KA+ L R E FS ++ +E E +L L L
Sbjct: 633 NEMLLEKLRQRIHDKAVALERAI------DEKFSALEEKEKELRQLRLAVRERDHDLERL 686
Query: 567 GLIFKGPAASTQEKNPRESTGNMVTGQ--TVCKNKPNMSDPEESRGNDELVKQEMLVQYL 624
+ A+ Q + Q T C+N + + E++ + +QE ++Q L
Sbjct: 687 RDVLSSNEATMQSMESLLRAKGLEVEQLSTTCQNLQWLKEEMETKFSRWQKEQESIIQQL 746
Query: 625 QDAYSFSRKITE 636
Q + K E
Sbjct: 747 QTSLHDRNKEVE 758
>gi|157311604 phosphodiesterase 4D interacting protein isoform 1
[Homo sapiens]
Length = 2346
Score = 32.0 bits (71), Expect = 4.3
Identities = 53/252 (21%), Positives = 95/252 (37%), Gaps = 21/252 (8%)
Query: 397 LPLTRFQAVVALAVGRLADKSVLVCKNAIQLLASFLANNPFSCKLSDADLAGPLQKETQK 456
L + + Q VV +LAD C ++ A + + +L LQ+ ++
Sbjct: 353 LEIQKLQRVVRQKERQLADAKQ--CVQFVEAAAHESEQQKEASWKHNQELRKALQQLQEE 410
Query: 457 LQEMRAQRRTAAASAVLDPEEEWEAMLPELKSTLQQLLQLPQGEEEIPEQIANTETTEDV 516
LQ Q R A + + E + L +L QL Q E+ + N++ T +
Sbjct: 411 LQNKSQQLRAWEAEKYNEIRTQ-EQNIQHLNHSLSHKEQLLQEFRELLQYRDNSDKTLEA 469
Query: 517 KGRIYQLLAKASYKKAIILTREATGHFQESEPFSHIDPEESEETRL----------LNIL 566
+ + L + + KA+ L R E FS ++ +E E +L L L
Sbjct: 470 NEMLLEKLRQRIHDKAVALERAI------DEKFSALEEKEKELRQLRLAVRERDHDLERL 523
Query: 567 GLIFKGPAASTQEKNPRESTGNMVTGQ--TVCKNKPNMSDPEESRGNDELVKQEMLVQYL 624
+ A+ Q + Q T C+N + + E++ + +QE ++Q L
Sbjct: 524 RDVLSSNEATMQSMESLLRAKGLEVEQLSTTCQNLQWLKEEMETKFSRWQKEQESIIQQL 583
Query: 625 QDAYSFSRKITE 636
Q + K E
Sbjct: 584 QTSLHDRNKEVE 595
>gi|222831595 DEAD (Asp-Glu-Ala-Asp) box polypeptide 60 [Homo sapiens]
Length = 1712
Score = 32.0 bits (71), Expect = 4.3
Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 14/109 (12%)
Query: 422 KNAIQLLASFLANNPFSCKLSDAD-----LAGPLQK-----ETQKLQEMRAQRRTAAASA 471
+NA + +++FL + + AD +A L+K E QK+ + ++Q++T
Sbjct: 1140 ENAAESVSTFLKKKQETKRPPKADKEAHVMANKLRKVKKSIEKQKIIDEKSQKKTRNVDQ 1199
Query: 472 VLDPEEEWEAMLPELKSTLQQLLQLPQGEEEIPEQIANTETTEDVKGRI 520
L E E + L L++ L++PQ ++ +TET + V GR+
Sbjct: 1200 SLIHEAEHD----NLVKCLEKNLEIPQDCTYADQKAVDTETLQKVFGRV 1244
>gi|41322923 plectin 1 isoform 11 [Homo sapiens]
Length = 4547
Score = 32.0 bits (71), Expect = 4.3
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Query: 890 LQGCAKQALEKLEEKRTSQEDP--KESPAMLPTFLLMNLLSLAGDVALQQ-LVHLEQAVS 946
LQ AK K EE +T Q++ +E+ A+ +FL L + ++Q LEQ
Sbjct: 2462 LQQEAKLLQLKSEEMQTVQQEQLLQETQALQQSFLSEKDSLLQRERFIEQEKAKLEQLFQ 2521
Query: 947 GELCRRRVLREEQEHKTKDPKEKNTSSETTMEE 979
E+ + + LREEQ+ + + +++ +MEE
Sbjct: 2522 DEVAKAQQLREEQQRQQQQMEQERQRLVASMEE 2554
>gi|41322914 plectin 1 isoform 10 [Homo sapiens]
Length = 4551
Score = 32.0 bits (71), Expect = 4.3
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Query: 890 LQGCAKQALEKLEEKRTSQEDP--KESPAMLPTFLLMNLLSLAGDVALQQ-LVHLEQAVS 946
LQ AK K EE +T Q++ +E+ A+ +FL L + ++Q LEQ
Sbjct: 2466 LQQEAKLLQLKSEEMQTVQQEQLLQETQALQQSFLSEKDSLLQRERFIEQEKAKLEQLFQ 2525
Query: 947 GELCRRRVLREEQEHKTKDPKEKNTSSETTMEE 979
E+ + + LREEQ+ + + +++ +MEE
Sbjct: 2526 DEVAKAQQLREEQQRQQQQMEQERQRLVASMEE 2558
>gi|41322919 plectin 1 isoform 8 [Homo sapiens]
Length = 4547
Score = 32.0 bits (71), Expect = 4.3
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Query: 890 LQGCAKQALEKLEEKRTSQEDP--KESPAMLPTFLLMNLLSLAGDVALQQ-LVHLEQAVS 946
LQ AK K EE +T Q++ +E+ A+ +FL L + ++Q LEQ
Sbjct: 2462 LQQEAKLLQLKSEEMQTVQQEQLLQETQALQQSFLSEKDSLLQRERFIEQEKAKLEQLFQ 2521
Query: 947 GELCRRRVLREEQEHKTKDPKEKNTSSETTMEE 979
E+ + + LREEQ+ + + +++ +MEE
Sbjct: 2522 DEVAKAQQLREEQQRQQQQMEQERQRLVASMEE 2554
>gi|41322910 plectin 1 isoform 7 [Homo sapiens]
Length = 4515
Score = 32.0 bits (71), Expect = 4.3
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Query: 890 LQGCAKQALEKLEEKRTSQEDP--KESPAMLPTFLLMNLLSLAGDVALQQ-LVHLEQAVS 946
LQ AK K EE +T Q++ +E+ A+ +FL L + ++Q LEQ
Sbjct: 2430 LQQEAKLLQLKSEEMQTVQQEQLLQETQALQQSFLSEKDSLLQRERFIEQEKAKLEQLFQ 2489
Query: 947 GELCRRRVLREEQEHKTKDPKEKNTSSETTMEE 979
E+ + + LREEQ+ + + +++ +MEE
Sbjct: 2490 DEVAKAQQLREEQQRQQQQMEQERQRLVASMEE 2522
>gi|41322916 plectin 1 isoform 6 [Homo sapiens]
Length = 4684
Score = 32.0 bits (71), Expect = 4.3
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Query: 890 LQGCAKQALEKLEEKRTSQEDP--KESPAMLPTFLLMNLLSLAGDVALQQ-LVHLEQAVS 946
LQ AK K EE +T Q++ +E+ A+ +FL L + ++Q LEQ
Sbjct: 2599 LQQEAKLLQLKSEEMQTVQQEQLLQETQALQQSFLSEKDSLLQRERFIEQEKAKLEQLFQ 2658
Query: 947 GELCRRRVLREEQEHKTKDPKEKNTSSETTMEE 979
E+ + + LREEQ+ + + +++ +MEE
Sbjct: 2659 DEVAKAQQLREEQQRQQQQMEQERQRLVASMEE 2691
>gi|41322908 plectin 1 isoform 3 [Homo sapiens]
Length = 4525
Score = 32.0 bits (71), Expect = 4.3
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Query: 890 LQGCAKQALEKLEEKRTSQEDP--KESPAMLPTFLLMNLLSLAGDVALQQ-LVHLEQAVS 946
LQ AK K EE +T Q++ +E+ A+ +FL L + ++Q LEQ
Sbjct: 2440 LQQEAKLLQLKSEEMQTVQQEQLLQETQALQQSFLSEKDSLLQRERFIEQEKAKLEQLFQ 2499
Query: 947 GELCRRRVLREEQEHKTKDPKEKNTSSETTMEE 979
E+ + + LREEQ+ + + +++ +MEE
Sbjct: 2500 DEVAKAQQLREEQQRQQQQMEQERQRLVASMEE 2532
>gi|41322912 plectin 1 isoform 2 [Homo sapiens]
Length = 4533
Score = 32.0 bits (71), Expect = 4.3
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Query: 890 LQGCAKQALEKLEEKRTSQEDP--KESPAMLPTFLLMNLLSLAGDVALQQ-LVHLEQAVS 946
LQ AK K EE +T Q++ +E+ A+ +FL L + ++Q LEQ
Sbjct: 2448 LQQEAKLLQLKSEEMQTVQQEQLLQETQALQQSFLSEKDSLLQRERFIEQEKAKLEQLFQ 2507
Query: 947 GELCRRRVLREEQEHKTKDPKEKNTSSETTMEE 979
E+ + + LREEQ+ + + +++ +MEE
Sbjct: 2508 DEVAKAQQLREEQQRQQQQMEQERQRLVASMEE 2540
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.133 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,000,699
Number of Sequences: 37866
Number of extensions: 2273823
Number of successful extensions: 8106
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 8039
Number of HSP's gapped (non-prelim): 119
length of query: 1401
length of database: 18,247,518
effective HSP length: 115
effective length of query: 1286
effective length of database: 13,892,928
effective search space: 17866305408
effective search space used: 17866305408
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 68 (30.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.